"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN THREE DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "Cell Wall Carbohydrate Metabolism" "BioPath" "202" "49" "" "" "pectin metabolism" "BioPath" "154" "40" "" "" "Miscellaneous acyl lipid metabolism" "AcylLipid" "138" "51" "" "" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "69" "19" "" "" "Phenylpropanoid pathway" "LitPath" "64" "15" "" "" "sexual reproduction" "TAIR-GO" "60" "15" "" "" "fatty acid metabolism" "TAIR-GO" "47" "8" "" "" "ubiquinone biosynthesis" "BioPath" "32" "4" "" "" "ubiquinone biosynthesis" "BioPath" "32" "4" "" "" "cellulose biosynthesis" "BioPath" "28" "6" "" "" "ORGAN DATA SET" "quantDE" "2.959323" "maxDE" "6.217517" "ORGAN DATA SET" "Miscellaneous acyl lipid metabolism" "AcylLipid" "42" "3.62400328061941e-10" "15" "0.000287065820331297" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "34" "1.07915006975753e-13" "8" "0.00177251390215604" "fatty acid metabolism" "TAIR-GO" "26" "1.07145230726900e-28" "4" "2.99788288640697e-06" "Cell Wall Carbohydrate Metabolism" "BioPath" "24" "0.000143721991127815" "6" "0.0982212547156317" "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" "22" "8.72652771638750e-13" "4" "0.000791424797930734" "sexual reproduction" "TAIR-GO" "20" "0" "5" "0" "Biosynthesis of prenyl diphosphates" "BioPath" "14" "2.63983756859128e-08" "3" "0.00169061294455307" "pectin metabolism" "BioPath" "14" "1.05587136874013e-06" "4" "0.0308099573533413" "polyisoprenoid biosynthesis" "AraCyc" "12" "4.12660032125346e-18" "3" "2.13773367531387e-06" "Phenylpropanoid pathway" "LitPath" "11" "0.00162561990961317" "5" "0.000592742023486804" "cellulose biosynthesis" "BioPath" "10" "3.5686057416924e-06" "2" "0.0160638082264568" "gibberellic acid catabolism" "TAIR-GO" "10" "1.59378256212471e-14" "1" "0.000968657286017976" "Diterpenoid biosynthesis" "KEGG" "10" "1.93350726605342e-13" "1" "0.000776644602760089" "Gibberellin metabolism" "LitPath" "10" "2.55951070884583e-07" "1" "0.0284351102070104" "giberelin catabolism" "LitPath" "10" "2.78867937143416e-17" "1" "0.000238942397504572" "prenyl diphosphate (GPP,FPP, GGPP) biosynthesis" "LitPath" "10" "8.15911084794325e-08" "1" "0.0223476892880649" "lignin biosynthesis" "AraCyc" "9" "7.22522511934595e-08" "4" "1.25600484278495e-05" "hemicellulose biosynthesis" "BioPath" "8" "1.96412253339183e-07" "1" "0.0152353312240940" "ubiquinone biosynthesis" "BioPath" "8" "3.16940210503556e-14" "1" "0.000833876302542113" "cell wall organization and biogenesis (sensu Magnoliophyta)" "TAIR-GO" "8" "2.44495143552753e-15" "1" "0.000294184504921992" "cuticle biosynthesis" "TAIR-GO" "8" "1.28374908867225e-09" "2" "0.000187877993000748" "long-chain fatty acid metabolism" "TAIR-GO" "8" "6.72504479919209e-08" "2" "0.000562077033203982" "very-long-chain fatty acid metabolism" "TAIR-GO" "8" "1.12484307056403e-08" "2" "0.000381034665929548" "biosynthesis of proto- and siroheme" "AraCyc" "8" "1.60088440281873e-07" "1" "0.0350659800566235" "mevalonate pathway" "AraCyc" "8" "7.46934939783606e-10" "1" "0.00806846940051031" "triacylglycerol degradation" "AraCyc" "8" "2.00893685606195e-09" "4" "3.17164923591396e-05" "C-compound and carbohydrate utilization " "FunCat" "8" "1.57342018444265e-18" "2" "0" "metabolism of vitamins, cofactors, and prosthetic groups" "FunCat" "8" "3.7635800280413e-17" "1" "0.000462136599941073" "Fructose and mannose metabolism" "KEGG" "8" "1.94146702104369e-07" "1" "0.0113575239467092" "Glycan Biosynthesis and Metabolism" "KEGG" "8" "7.05537925363646e-07" "1" "0.0206969859084358" "Glycerolipid metabolism" "KEGG" "8" "3.23199857555651e-08" "1" "0.00595068710743455" "Ubiquinone biosynthesis" "KEGG" "8" "2.3920493284232e-14" "1" "0.000648536451956986" "ubiquinone biosynthesis" "LitPath" "8" "8.65859953959808e-13" "1" "0.00140835526514272" "suberin biosynthesis" "AraCyc" "7" "6.46806458304887e-08" "3" "6.404858218206e-06" "STRESS DATA SET" "quantDE" "0" "maxDE" "2.353175" "STRESS DATA SET" "HORMONE DATA SET" "quantDE" "0.3649936" "maxDE" "2.4669325" "HORMONE DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "89" "3.83102579341388e-35" "22" "4.25855582508374e-09" "pectin metabolism" "BioPath" "67" "1.46761606292313e-52" "18" "3.83847330992257e-12" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "54" "1.75386961479565e-36" "6" "2.17044492354332e-05" "terpenoid metabolism" "LitPath" "54" "2.46580193225891e-36" "6" "2.72259989481110e-05" "Miscellaneous acyl lipid metabolism" "AcylLipid" "44" "1.02144293767437e-11" "16" "2.09516870478082e-06" "Starch and sucrose metabolism" "KEGG" "42" "1.28712614063924e-39" "6" "3.24044675347537e-06" "core phenylpropanoid metabolism" "BioPath" "22" "1.95262552593094e-11" "3" "0.00943445823715392" "Phenylpropanoid Metabolism" "BioPath" "22" "0.0122483232304429" "3" "0.409147931741911" "Phenylpropanoid pathway" "LitPath" "22" "0.0434393026603578" "3" "0.246747122861346" "sexual reproduction" "TAIR-GO" "20" "0" "5" "0" "monoterpene biosynthesis" "LitPath" "20" "2.08476845162653e-17" "2" "0.000284106234285798" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "19" "0.000385860178288605" "5" "0.0382238111175485" "sucrose metabolism" "BioPath" "16" "2.54234981222063e-12" "2" "0.00494138421206435" "Galactose metabolism" "KEGG" "16" "4.66296683735858e-15" "2" "0.00251904397787777" "biogenesis of cell wall" "FunCat" "14" "3.20408525596139e-08" "6" "4.19206227026141e-05" "C-compound and carbohydrate utilization " "FunCat" "14" "0" "2" "0" "fatty acid metabolism" "TAIR-GO" "13" "1.64358671696345e-09" "2" "0.00239690490287083" "jasmonic acid biosynthesis" "TAIR-GO" "10" "5.3287228205379e-08" "1" "0.0182744855433110" "jasmonic acid mediated signaling pathway" "TAIR-GO" "10" "0" "1" "0" "jasmonic acid metabolism" "TAIR-GO" "10" "0" "1" "0" "monoterpenoid biosynthesis" "TAIR-GO" "10" "3.92540349152747e-14" "1" "0.000709985386030034" "N-terminal protein myristoylation" "TAIR-GO" "10" "3.48358386507378e-10" "1" "0.00620540432521812" "pentacyclic triterpenoid biosynthesis" "TAIR-GO" "10" "1.70965458061483e-11" "1" "0.00322421676476631" "response to wounding" "TAIR-GO" "10" "7.30955661970044e-07" "1" "0.0241908783187665" "jasmonic acid biosynthesis" "AraCyc" "10" "1.27796139319393e-13" "1" "0.00169175310391812" "monoterpene biosynthesis" "AraCyc" "10" "3.92932887487940e-21" "1" "3.41846689534393e-05" "plant monoterpene biosynthesis" "AraCyc" "10" "8.79001788951481e-24" "1" "1.14177767004081e-05" "C-compound, carbohydrate catabolism" "FunCat" "10" "1.08195018643578e-07" "3" "0.00330525606666121" "Biosynthesis of steroids" "KEGG" "10" "2.13582699205170e-05" "1" "0.0635237927818047" "sequiterpene biosynthesis" "LitPath" "10" "3.84592184602517e-11" "1" "0.00100355806951920" "triterpene biosynthesis" "LitPath" "10" "7.48676802520734e-05" "1" "0.0385479292183677" "cellulose biosynthesis" "AraCyc" "8" "2.22582222137099e-08" "2" "0.000417638232210900" "lactose degradation IV" "AraCyc" "8" "1.10441958589331e-16" "2" "1.19166214667136e-06" "transport " "FunCat" "8" "1.44015220191278e-14" "3" "0" "Oxidative phosphorylation" "KEGG" "8" "9.6219071952417e-05" "2" "0.0269561368948028" "MUTANT DATA SET" "quantDE" "1.424959" "maxDE" "7.138195813" "MUTANT DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "89" "2.53596073789068e-21" "21" "2.89637237645144e-05" "pectin metabolism" "BioPath" "73" "3.77142882434225e-47" "18" "3.95219451558073e-09" "Miscellaneous acyl lipid metabolism" "AcylLipid" "52" "1.06093975742300e-15" "20" "1.10259821114753e-05" "C-compound and carbohydrate metabolism" "FunCat" "40" "4.42509855984766e-05" "12" "0.00788300811619401" "Starch and sucrose metabolism" "KEGG" "33" "6.90567980945836e-17" "6" "7.18526703059788e-05" "Phenylpropanoid pathway" "LitPath" "31" "4.65359472152537e-15" "7" "1.90580500623711e-05" "Phenylpropanoid Metabolism" "BioPath" "29" "0.0208732263735554" "7" "0.0856088635394558" "biogenesis of cell wall" "FunCat" "28" "5.89087807264063e-15" "9" "1.66650930955888e-06" "Glycan Biosynthesis and Metabolism" "KEGG" "26" "1.09916060847657e-14" "4" "0.00176448955425832" "core phenylpropanoid metabolism" "BioPath" "24" "1.43543190656112e-09" "4" "0.00634090056124549" "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" "20" "0.000741589021229555" "3" "0.086172749385112" "sexual reproduction" "TAIR-GO" "20" "0" "5" "0" "glycolysis and gluconeogenesis" "FunCat" "16" "0.0291682362489948" "4" "0.142994796545491" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "16" "0.0150517982784969" "6" "0.0822845035293809" "Glutamate/glutamine from nitrogen fixation" "BioPath" "14" "8.2425375754386e-09" "2" "0.00433819261894806" "lactose degradation IV" "AraCyc" "14" "1.22677664540722e-21" "4" "3.89440265638315e-08" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "14" "5.68390152302911e-08" "2" "0.0125767820847923" "nitrogen and sulfur metabolism" "FunCat" "14" "8.04301679515955e-08" "2" "0.0109646222989001" "Glutamate metabolism" "KEGG" "14" "8.3801111200226e-06" "2" "0.0221068601663285" "Glycerolipid metabolism" "KEGG" "14" "2.11122758304843e-07" "2" "0.0107905459924503" "Nitrogen metabolism" "KEGG" "14" "1.83709322255732e-06" "2" "0.0099074757739807" "Oxidative phosphorylation" "KEGG" "14" "7.06063909956646e-06" "3" "0.0188860368442117" "Biosynthesis of prenyl diphosphates" "BioPath" "12" "0.0177685400968192" "2" "0.111835053561269" "triacylglycerol degradation" "AraCyc" "12" "9.3549033615936e-09" "5" "0.000380189496395332" "Galactose metabolism" "KEGG" "12" "1.56141716847554e-06" "2" "0.00906829535092567" "lignin biosynthesis" "AraCyc" "11" "0.000116131303703188" "5" "0.000133384719078592" "cellulose biosynthesis" "BioPath" "10" "0.0156043335156776" "2" "0.117626174127944" "gibberellic acid catabolism" "TAIR-GO" "10" "3.09160660103145e-12" "1" "0.00191136492483288" "ammonia assimilation cycle" "AraCyc" "10" "1.72936903659114e-09" "1" "0.0112132548681223" "glutamine biosynthesis I" "AraCyc" "10" "4.45500949766375e-10" "1" "0.00670008188180646" "nitrate assimilation pathway" "AraCyc" "10" "1.62575187676455e-08" "1" "0.0138495831161605" "polyisoprenoid biosynthesis" "AraCyc" "10" "4.27111984761787e-09" "2" "0.00192070865588694" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "10" "0.00376342891768584" "4" "0.00253633157016553" "transport " "FunCat" "10" "9.16439902864341e-16" "3" "0" "Diterpenoid biosynthesis" "KEGG" "10" "7.22063377778309e-07" "1" "0.0118140249729880" "Fructose and mannose metabolism" "KEGG" "10" "0.000911498545542156" "2" "0.0263996355654654" "Peptidoglycan biosynthesis" "KEGG" "10" "7.4109351848193e-12" "1" "0.00190732790038884" "Gibberellin metabolism" "LitPath" "10" "1.22613998017070e-05" "1" "0.0391528770863726" "giberelin catabolism" "LitPath" "10" "2.33896754066777e-15" "1" "0.000338863763733757" "prenyl diphosphate (GPP,FPP, GGPP) biosynthesis" "LitPath" "10" "4.18706794655877e-06" "1" "0.0308911204387728" "cytokinin catabolism" "TAIR-GO" "9" "2.63360512415433e-13" "1" "0.00191136492483288" "induced systemic resistance, jasmonic acid mediated signaling pathway" "TAIR-GO" "9" "0" "1" "0" "jasmonic acid and ethylene-dependent systemic resistance" "TAIR-GO" "9" "9.66721774243367e-16" "1" "0.000196291951562624" "jasmonic acid mediated signaling pathway" "TAIR-GO" "9" "0" "1" "0" "photomorphogenesis" "TAIR-GO" "9" "9.66721774243367e-16" "1" "0.000583670764692331" "protein amino acid adenylylation" "TAIR-GO" "9" "0" "1" "0" "red, far-red light phototransduction" "TAIR-GO" "9" "0" "1" "0" "response to jasmonic acid stimulus" "TAIR-GO" "9" "4.52882788344985e-10" "1" "0.00394340438958177" "cytokinins degradation" "AraCyc" "9" "7.06600697330275e-14" "1" "0.00100445628618026" "hemicellulose biosynthesis" "BioPath" "8" "0.000541116615557035" "1" "0.066597861575814" "ubiquinone biosynthesis" "BioPath" "8" "2.51674712376746e-10" "1" "0.00409571181522373" "cell wall organization and biogenesis (sensu Magnoliophyta)" "TAIR-GO" "8" "1.89076325897534e-13" "1" "0.000583670764692331" "cuticle biosynthesis" "TAIR-GO" "8" "8.1718369110114e-08" "2" "0.000525153306380106" "fatty acid metabolism" "TAIR-GO" "8" "0.000231572419554831" "2" "0.00484763298050733" "long-chain fatty acid metabolism" "TAIR-GO" "8" "3.69163231665802e-06" "2" "0.00154723668624514" "very-long-chain fatty acid metabolism" "TAIR-GO" "8" "6.66132017482887e-07" "2" "0.00105531514372465" "biosynthesis of proto- and siroheme" "AraCyc" "8" "0.00158150581701284" "1" "0.175548282861724" "mevalonate pathway" "AraCyc" "8" "1.56704167781157e-05" "1" "0.0472828905727681" "mixed acid fermentation" "AraCyc" "8" "0.000321918004131622" "2" "0.0261608783396543" "C-compound, carbohydrate catabolism" "FunCat" "8" "0.00111329075183484" "2" "0.0720627799002782" "metabolism of vitamins, cofactors, and prosthetic groups" "FunCat" "8" "4.92916240982211e-12" "1" "0.0032371967442375" "transport ATPases" "FunCat" "8" "0.00167551906177389" "2" "0.0389610249098223" "transport facilitation" "FunCat" "8" "0" "2" "1.28680567653767e-05" "ATP synthesis" "KEGG" "8" "0.00138720108344340" "2" "0.0182308188485747" "Ubiquinone biosynthesis" "KEGG" "8" "8.3602554581311e-09" "1" "0.0099344492729259" "ubiquinone biosynthesis" "LitPath" "8" "2.96081243509354e-11" "1" "0.00198937964363037" "suberin biosynthesis" "AraCyc" "7" "0.000337741548384886" "3" "0.000273264451942989"