"Pathway"	"Pathway.source"	"Annotation.score"	"p.value.score"	"No.of.genes"	"p.value.genes"
"IN ALL DATA SETS"		"sum.of.scores"	"sum.of.genes"		
"ORGAN DATA SET"	"quantDE"	2.63865	"maxDE"	4.1239073	"ORGAN DATA SET"
"Diterpenoid biosynthesis"	"KEGG"	10	1.80721628743406E-016	1	0.000241438509054308
"biosynthesis of glycosides"	"FunCat"	10	3.57265188301642E-023	1	0.000073955992047833
"metabolismn of primary metabolic sugars derivatives "	"FunCat"	10	3.57265188301642E-023	1	0.000073955992047833
"secondary metabolism"	"FunCat"	10	0.00000000283635839717593	1	0.0367986780366374
"glucosinolate catabolism"	"TAIR-GO"	10	3.304935532542E-030	1	0.000000519290877149799
"Tryptophan metabolism"	"KEGG"	10	2.64775041917383E-015	1	0.00200625214273526
"Gibberellin metabolism"	"LitPath"	10	0.000000000735183554504937	1	0.00344112183428118
"giberelin biosynthesis"	"LitPath"	10	0.0000000000146833866936197	1	0.00198937964363037
"Glucosinolate Metabolism"	"LitPath"	10	0.0000000243512486244926	1	0.00430944927888316
"STRESS DATA SET"	"quantDE"	1.335773	"maxDE"	2.885963	"STRESS DATA SET"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	301	3.49048499241159E-073	36	0.0000000000395307416622491
"Photosystems "	"BioPath"	276	5.09201566123021E-051	45	0.000000000000444714549714957
"C-compound and carbohydrate metabolism"	"FunCat"	236	1.11750876824527E-018	40	0.000629756479869299
"biogenesis of chloroplast"	"FunCat"	187	6.31313937026047E-080	29	7.57784822326587E-016
"Intermediary Carbon Metabolism"	"BioPath"	180	0.000025967623387921	28	0.120074434894189
"photosynthesis"	"FunCat"	168	3.91796496566784E-097	27	6.69324468718654E-019
"Chlorophyll biosynthesis and breakdown"	"BioPath"	151	4.58409826787414E-050	18	0.0000000141780574050463
"chlorophyll and phytochromobilin metabolism"	"LitPath"	145	4.19263531244133E-058	17	0.00000000187351101435704
"glycolysis and gluconeogenesis"	"FunCat"	129	4.28804130898873E-015	20	0.00261494650579437
"Photosynthesis"	"KEGG"	123	2.48215295243516E-081	23	7.2214217484254E-020
"Carbon fixation"	"KEGG"	115	5.73828328946491E-034	18	0.000000503102849211227
"additional photosystem II components"	"BioPath"	113	1.91005419933255E-022	18	0.000000498285727865762
"Porphyrin and chlorophyll metabolism"	"KEGG"	109	1.90976590558719E-059	13	0.00000000351471590197762
"Glycolysis / Gluconeogenesis"	"KEGG"	108	5.92420287816444E-024	16	0.000114389358162144
"chlorophyll biosynthesis"	"AraCyc"	106	4.72565325707065E-032	13	0.00117651312144042
"Photosystem I"	"BioPath"	87	0.000100928949580299	16	0.00276326699831712
"Calvin cycle"	"AraCyc"	87	6.53514140974546E-035	17	0.0000000195688131378956
"chlorophyll biosynthesis"	"TAIR-GO"	85	2.97786559467267E-046	9	0.000000180275312158167
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	77	0.0484704890403148	10	0.219305865809299
"Pentose phosphate pathway"	"KEGG"	77	3.77391741121476E-029	13	0.0000021311498637912
"acetate fermentation"	"AraCyc"	70	0.000000000680850821185466	12	0.0341284911370987
"fructose degradation (anaerobic)"	"AraCyc"	70	0.0000000000397902762564174	12	0.0190035541585277
"glycolysis IV"	"AraCyc"	70	0.000000000057791706418139	12	0.0215220076798855
"sorbitol fermentation"	"AraCyc"	70	0.000000000949451036158326	12	0.0272946970400397
"Carotenoid and abscisic acid metabolism"	"LitPath"	69	3.53255260421404E-022	8	0.00037713384718764
"chlorophyll biosynthesis"	"LitPath"	69	3.01545501183587E-044	7	0.000000328195860507548
"Biosynthesis of steroids"	"KEGG"	64	0.000000169941017559243	7	0.0310556972380393
"Glycine, serine and threonine metabolism"	"KEGG"	63	5.42941340623213E-019	12	0.00000241258523479713
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	62	2.80526388390444E-025	8	0.0000135902302029523
"photosystem I"	"TAIR-GO"	62	0	8	0
"transport "	"FunCat"	57	0	10	0
"Carotenoid biosynthesis"	"BioPath"	56	8.31091418885503E-022	6	0.000296515935565897
"carotenoid biosynthesis"	"AraCyc"	56	9.05740276676897E-030	6	0.0000178739705116859
"Synthesis of fatty acids in plastids"	"AcylLipid"	56	1.2151479424935E-021	8	0.0000253235584213821
"carotenid biosynthesis"	"LitPath"	56	1.96759588889707E-026	6	0.0000765559732945186
"gluconeogenesis"	"AraCyc"	54	0.000000212462303210168	8	0.0558551882464167
"glycerol degradation II"	"AraCyc"	52	0.0000000172863059884199	8	0.0558551882464167
"photorespiration"	"AraCyc"	52	4.13973823186101E-017	11	0.000170327558684727
"Fructose and mannose metabolism"	"KEGG"	52	0.0000000875406870878114	8	0.0108528928196546
"mRNA processing in chloroplast"	"BioPath"	50	1.2760169157276E-032	10	0.00000000738452079286882
"Synthesis of membrane lipids in plastids"	"AcylLipid"	49	2.68787621236445E-023	6	0.00000782490639599087
"biosynthesis of proto- and siroheme"	"AraCyc"	48	0.00000167087763167055	8	0.0327956784590578
"photosystem II"	"TAIR-GO"	47	0	6	0
"Chlorophyll a/b binding proteins"	"BioPath"	46	0.0000144389432139111	6	0.0153877907223054
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	46	0.0000000591443262177353	5	0.0277045629010861
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	46	4.37716260815368E-026	5	0.000187449063637075
"starch metabolism"	"BioPath"	44	0.00308163408354324	8	0.0259160743188853
"Transcription (chloroplast)"	"BioPath"	44	2.82343728909269E-023	5	0.0000646596952467945
"fatty acid biosynthesis"	"TAIR-GO"	44	0.00000000000168635696047538	5	0.00396503546358471
"transcription initiation"	"TAIR-GO"	44	4.2839826425896E-027	5	0.0000440312233685985
"cysteine biosynthesis I"	"AraCyc"	42	0.0000128602099452416	10	0.00261892213384832
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	42	0.0414286413223753	6	0.231527893904049
"Protein export"	"KEGG"	40	0.0000000000110079983455386	6	0.00747746327909426
"electron transport"	"TAIR-GO"	39	0.0000000258260291738689	5	0.0189392006866997
"pentose-phosphate pathway "	"FunCat"	39	0.0000000000170513482266187	6	0.00229690205528413
"lactose degradation IV"	"AraCyc"	37	0	9	0
"photosynthesis"	"TAIR-GO"	36	0.00000132916469794373	5	0.0189392006866997
"protein biosynthesis"	"TAIR-GO"	36	0	6	0
"glycine biosynthesis I"	"AraCyc"	36	0.00000616951719219848	8	0.0433005501067688
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	36	0.0000000000000124221113470661	8	0.000315834205520625
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	36	0.000000000279756651821244	6	0.000580453222191493
"carotenoid biosynthesis"	"TAIR-GO"	35	2.21822301811194E-016	4	0.000728887951419722
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	35	6.9413064748574E-021	10	0.00000000181801482822282
"Translation (chloroplast)"	"BioPath"	34	7.35579110966709E-020	6	0.00000155378190332364
"photorespiration"	"TAIR-GO"	34	0	5	0
"porphyrin biosynthesis"	"TAIR-GO"	34	0.0000000000528115947996	5	0.00165192892644827
"fatty acid biosynthesis -- initial steps"	"AraCyc"	34	0.000312191942620174	5	0.137425753898763
"transport facilitation"	"FunCat"	34	0	6	0
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	32	0.000000194083965596416	5	0.0355397013772659
"starch biosynthesis"	"AraCyc"	31	0	4	0
"Cytochrome b6/f complex"	"BioPath"	30	0.0000000000256639016763202	3	0.0328868785785484
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	30	2.12814686999656E-023	3	0.00015680597069719
"pentose-phosphate shunt"	"TAIR-GO"	30	0.000000000348520125531757	4	0.00704237377050563
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	30	2.89030779586145E-019	3	0.00188414263852428
"serine biosynthesis"	"AraCyc"	30	5.59277636714602E-024	9	0
"phytochromobilin biosynthesis"	"LitPath"	30	0.000000000026436300588367	3	0.00571134546021357
"photosynthetic electron transport"	"TAIR-GO"	29	1.22579448263874E-018	4	0.0000946364003181889
"ascorbic acid biosynthesis"	"BioPath"	28	0.0485754155940337	4	0.192715423481845
"photosystem I reaction center"	"BioPath"	28	0.000000000000417055440468615	6	0.000042510858594543
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	28	0.000000390969222664311	3	0.0116862983297784
"mannitol degradation"	"AraCyc"	28	0.00000212837027222335	5	0.0515977057295394
"sorbitol degradation"	"AraCyc"	28	0.00000520397885771932	5	0.06104642799755
"Fatty acid biosynthesis (path 1)"	"KEGG"	28	0.0000000570298848324728	3	0.0642003595187629
"starch degradation"	"AraCyc"	27	0.000000268937377287197	5	0.003798313058061
"Early light-inducible proteins"	"BioPath"	26	0.00000000180549580572038	4	0.00115979000680733
"tRNA charging pathway"	"AraCyc"	26	0.00392551794230568	10	0.0120022349576201
"Aminoacyl-tRNA biosynthesis"	"KEGG"	26	0.0000211809005076501	10	0.000316503242633159
"regulation of transcription"	"TAIR-GO"	25	0	3	0
"Delta-pH pathway"	"BioPath"	24	0	3	0
"light harvesting complex"	"BioPath"	24	0.0000000191103509263345	3	0.00567115071665208
"aerobic respiration"	"FunCat"	24	0.000211325143714684	3	0.0464418163152447
"respiration"	"FunCat"	24	0.000211325143714684	3	0.0464418163152447
"Ferredoxin"	"BioPath"	22	0.000000064763971167487	5	0.000593381740772783
"glycine degradation I"	"AraCyc"	22	0.000000000000317653901530316	5	0.000114576699552245
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	22	0.000000000584673544140497	3	0.00401139229357878
"energy"	"FunCat"	22	0	4	0
"ATP synthase components"	"BioPath"	20	0.00401849430648038	3	0.0485181670944643
"Plastocyanin"	"BioPath"	20	0	2	0
"Regulatory enzymes"	"BioPath"	20	0.000000000132890470999984	2	0.00328289313994455
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	20	0.000148348137006148	2	0.0462733971052548
"carotene biosynthesis"	"TAIR-GO"	20	0.0000000000000188995646002876	2	0.00140981514938758
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	20	0.000000000000179874764876809	2	0.00140981514938758
"phytochromobilin biosynthesis"	"TAIR-GO"	20	0.000000000000179874764876809	2	0.00140981514938758
"cysteine biosynthesis II"	"AraCyc"	20	0.000393456265482316	7	0.00236700994341568
"formylTHF biosynthesis"	"AraCyc"	20	0.00109950952378943	4	0.041808540656884
"glucose and glucose-1-phosphate degradation"	"AraCyc"	20	0.0000012937425372751	3	0.0476885032119536
"biosynthesis of vitamins, cofactors, and prosthetic groups"	"FunCat"	20	0.0000683914576279352	3	0.0367104727751167
"nucleotide metabolism"	"FunCat"	20	0	5	0
"transported compounds (substrates)"	"FunCat"	20	0	4	0
"Cyanoamino acid metabolism"	"KEGG"	20	0.00235472740874547	3	0.143332012262995
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	20	0.000658823703067145	2	0.100628282145313
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	19	0.00000209385287887201	6	0.00018923527847621
"Oxygen-evolving enhancer protein"	"BioPath"	18	0.000000227151856070741	3	0.00214208628553628
"psbP family of thylakoid proteins"	"BioPath"	18	0.0000000000286613665917443	5	0.0000105689123809623
"Sec (secretory) pathway"	"BioPath"	18	0.0000000000000267537810758996	3	0.000485803741358348
"nonphotochemical quenching"	"TAIR-GO"	18	0	2	0
"biosynthesis of pyrimidine ribonucleotides"	"AraCyc"	18	0.0158239454084929	4	0.103916971145625
"lysine biosynthesis I"	"AraCyc"	18	0.00303537242226288	5	0.00773932791893305
"transcription"	"FunCat"	18	0.00000293231528228545	3	0.0367104727751167
"photoinhibition"	"TAIR-GO"	17	0.0000000000359664623607523	2	0.00140981514938758
"photosystem II assembly"	"TAIR-GO"	17	0.0000000000000207917695297351	2	0.00140981514938758
"photosystem II stabilization"	"TAIR-GO"	17	0	2	0
"starch biosynthesis"	"TAIR-GO"	17	0.000537140390980779	2	0.0349364905556862
"galactose degradation I"	"AraCyc"	17	0.000000000107410873226913	5	0.0000116291805333407
"glycosylglyceride desaturation pathway"	"AraCyc"	17	0.0000000492235384362291	2	0.00501321779106971
"magnesium chelatase complex"	"TAIR-GO"	16	0	2	0
"plastid organization and biogenesis"	"TAIR-GO"	16	0.000000000203317555525132	3	0.00015680597069719
"protein folding"	"TAIR-GO"	16	0	2	0
"response to high light intensity"	"TAIR-GO"	16	0.000000000203317555525132	2	0.00140981514938758
"RNA processing"	"TAIR-GO"	16	0	3	0
"de novo biosynthesis of pyrimidine ribonucleotides"	"AraCyc"	16	0.0471979933013071	3	0.223205577643686
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	16	0	3	0
"translation"	"FunCat"	16	0.00304357142827117	4	0.0346990779545889
"fatty acid desaturation"	"TAIR-GO"	15	0.00000000112714792351422	2	0.00140981514938758
"photosynthetic electron transport in photosystem I"	"TAIR-GO"	15	0.00000000112714792351422	2	0.00140981514938758
"protein-chloroplast targeting"	"TAIR-GO"	15	0.00000266954334460067	2	0.0118502790716761
"histidine biosynthesis"	"AraCyc"	15	0.0417297204259098	2	0.259671386408953
"histidine biosynthesis I"	"AraCyc"	15	0.0156539796359843	2	0.228446581809584
"ribose degradation"	"AraCyc"	15	0.00000307490868792501	6	0.0000965284467655097
"Histidine metabolism"	"KEGG"	15	0.00910049063419814	2	0.200086039859059
"Membrane Transport"	"KEGG"	15	0.00910049063419814	3	0.100103174388371
"amino acid biosynthesis"	"TAIR-GO"	14	0.00000641066202726039	3	0.00758929031363691
"aspartate family amino acid biosynthesis"	"TAIR-GO"	14	0	3	0
"carbon monoxide dehydrogenase pathway"	"AraCyc"	14	0.0400161826244886	6	0.0297945840939071
"homoserine biosynthesis"	"AraCyc"	14	0.00000731079899470922	3	0.00401139229357878
"plastoquinone biosynthesis"	"AraCyc"	14	0.000000126495091020727	2	0.00501321779106971
"vitamin E biosynthesis"	"AraCyc"	14	0.00298454965974377	2	0.0339448338682741
"transcriptional control"	"FunCat"	14	0.0102546681175256	2	0.0972450663872643
"amylopectin biosynthesis"	"TAIR-GO"	13	0.0000000000543754384126962	2	0.00140981514938758
"pectin biosynthesis"	"TAIR-GO"	13	0.0000000000543754384126962	2	0.00140981514938758
"phosphate transport"	"TAIR-GO"	13	0.000000270059092030225	2	0.00516884268545875
"protein targeting, sorting and translocation"	"FunCat"	13	0.00035088695950644	2	0.0458435174218408
"Other ion-coupled transporters"	"KEGG"	13	0.000950254221849175	2	0.0688357491649853
"Plastoquinone biosynthesis"	"BioPath"	12	0	2	0
"glycine decarboxylation via glycine cleavage system"	"TAIR-GO"	12	0	2	0
"plastid large ribosomal subunit"	"TAIR-GO"	12	0	2	0
"peptidoglycan biosynthesis"	"AraCyc"	12	0.000123354590428596	2	0.0499178469714795
"aminoacyl-tRNA-synthetases"	"FunCat"	12	0.00226115378809419	5	0.00475738978471576
"electron / hydrogen transport "	"FunCat"	12	0.0000450128700659843	2	0.0135246644089124
"Streptomycin biosynthesis"	"KEGG"	12	0.0444660815655403	2	0.0842494542508386
"superpathway of gluconate degradation"	"AraCyc"	11	0.00121264870747269	6	0.00093547457020811
"brassinosteroid biosynthesis"	"BioPath"	10	0.00675366915358349	1	0.0598438841083021
"Transcriptional regulators (chloroplast)"	"BioPath"	10	0.000104860523574524	1	0.0221365567960638
"ATP synthesis coupled proton transport"	"TAIR-GO"	10	0.0086542175294163	1	0.10032592071565
"biotin binding"	"TAIR-GO"	10	0.00000407136306023112	1	0.0126239612235116
"carotenoid biosynthesis/TAS"	"TAIR-GO"	10	0	1	0
"cell death"	"TAIR-GO"	10	0.00584147629809123	1	0.0649356640580607
"chaperone cofactor dependent protein folding"	"TAIR-GO"	10	0	1	0
"chlorophyll catabolism"	"TAIR-GO"	10	0.000424719724789098	1	0.0350522533717597
"chloroplast ATP synthase complex"	"TAIR-GO"	10	0.00000407136306023112	1	0.0126239612235116
"cysteine biosynthesis"	"TAIR-GO"	10	0.000424719724789098	1	0.0350522533717597
"cytochrome b6f complex"	"TAIR-GO"	10	0.0086542175294163	1	0.139615793243452
"enzyme binding"	"TAIR-GO"	10	0	1	0
"etioplast organization and biogenesis"	"TAIR-GO"	10	0	1	0
"glucose metabolism"	"TAIR-GO"	10	0.0086542175294163	1	0.10032592071565
"hypersensitive response"	"TAIR-GO"	10	0.0404568634403719	1	0.139615793243452
"isoprenoid biosynthesis"	"TAIR-GO"	10	0.0311599824826755	1	0.10032592071565
"lipid metabolism"	"TAIR-GO"	10	0.000424719724789098	1	0.0350522533717597
"lipoic acid metabolism"	"TAIR-GO"	10	0	1	0
"pentose-phosphate shunt, oxidative branch"	"TAIR-GO"	10	0.0086542175294163	1	0.10032592071565
"phospholipid metabolism"	"TAIR-GO"	10	0.00000407136306023112	1	0.0126239612235116
"photosynthesis, dark reaction"	"TAIR-GO"	10	0	1	0
"photosynthetic electron transport in cytochrome b6/f"	"TAIR-GO"	10	0.0000000175509059608594	1	0.0126239612235116
"photosynthetic water oxidation"	"TAIR-GO"	10	0	1	0
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	10	0.000587960440775053	1	0.0649356640580607
"plastoquinone biosynthesis"	"TAIR-GO"	10	0.00000407136306023112	1	0.0126239612235116
"positive regulation of transcription"	"TAIR-GO"	10	0.000301215876329901	1	0.0350522533717597
"protein binding"	"TAIR-GO"	10	0.00107244053819581	1	0.10032592071565
"protein complex assembly"	"TAIR-GO"	10	0	1	0
"proton transport"	"TAIR-GO"	10	0.0086542175294163	1	0.10032592071565
"response to chemical substance"	"TAIR-GO"	10	0	1	0
"RNA binding"	"TAIR-GO"	10	0	1	0
"systemic acquired resistance"	"TAIR-GO"	10	0.014705573786384	1	0.181487514318558
"tetrapyrrole binding"	"TAIR-GO"	10	0	1	0
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	10	0	1	0
"vitamin E biosynthesis"	"TAIR-GO"	10	0.00584147629809123	1	0.0649356640580607
"xanthophyll cycle"	"TAIR-GO"	10	0	1	0
"xanthophyll metabolism"	"TAIR-GO"	10	0	1	0
"ascorbate biosynthesis"	"AraCyc"	10	0.0133465014635698	1	0.264060354171507
"glutamate degradation I"	"AraCyc"	10	0.0251277404370259	2	0.0499178469714795
"phospholipid desaturation pathway"	"AraCyc"	10	0.0332617858258788	1	0.0982620670901792
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	10	0.000042283787716609	1	0.0982620670901792
"thiamine biosynthesis"	"AraCyc"	10	0.000464725259428054	1	0.136834992609995
"triacylglycerol biosynthesis"	"AraCyc"	10	0.0430858499943122	1	0.136834992609995
"xanthophyll cycle"	"AraCyc"	10	0.00000107823633731365	1	0.0123394798613004
"fatty acid biosynthesis"	"FunCat"	10	0.000000000284971474081158	1	0.00893539686431755
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	10	0	1	0
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio"	"KEGG"	10	0.0161710957015575	1	0.16444610866682
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation"	"KEGG"	10	0.00241217801102326	1	0.0805183638870488
"Androgen and estrogen metabolism"	"KEGG"	10	0.00351103262120573	1	0.106777433036603
"Lysine biosynthesis"	"KEGG"	10	0.0326228470250363	3	0.0129025192087468
"Other translation factors"	"KEGG"	10	0.0183512386430115	3	0.0642003595187629
"Peptidoglycan biosynthesis"	"KEGG"	10	0.00160957358471313	1	0.0566927332184403
"Tetracycline biosynthesis"	"KEGG"	10	0.000386849211807689	1	0.0359402152594261
"chlorophyll a biosynthesis"	"LitPath"	10	0	1	0
"chlorophyll catabolism"	"LitPath"	10	0.001516673066838	1	0.0417651032659502
"phytol biosynthesis"	"LitPath"	10	0	1	0
"plastochinone and phylloquinone biosynthesis"	"LitPath"	10	0.00470185631622133	4	0.00651639989296613
"carbohydrate biosynthesis"	"TAIR-GO"	9	0	1	0
"histidine biosynthesis"	"TAIR-GO"	9	0.000342328306836913	1	0.0350522533717597
"sucrose biosynthesis"	"TAIR-GO"	9	0	1	0
"alanine degradation III"	"AraCyc"	9	0.0000208742327907069	1	0.0342852648914958
"carotenoid degradation"	"LitPath"	9	0.00000000253013277401549	1	0.0151446035945625
"photosystem I (sensu Viridiplantae)"	"TAIR-GO"	8	0	1	0
"PSII associated light-harvesting complex II"	"TAIR-GO"	8	0.0000250994969603841	1	0.0126239612235116
"C-compound and carbohydrate transport "	"FunCat"	8	0.00000265785289696707	2	0.00312638354290805
"secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	8	0	1	0
"Cell division"	"KEGG"	8	0.00388569315297561	2	0.0315512586094091
"Cell Growth and Death"	"KEGG"	8	0.00388569315297561	2	0.0315512586094091
"Replication complex"	"KEGG"	8	0.0164712253176822	2	0.0548524416759257
"Riboflavin metabolism"	"KEGG"	8	0.00311854057833537	3	0.00624284183311374
"Ubiquinone biosynthesis"	"KEGG"	8	0.0252714689876796	3	0.00918513965192444
"proton gradient regulation"	"BioPath"	7	0	1	0
"auxin metabolism"	"TAIR-GO"	7	0.0366581100990209	1	0.10032592071565
"regulation of transcription, DNA-dependent"	"TAIR-GO"	7	0	1	0
"HORMONE DATA SET"	"quantDE"	0.7760579	"maxDE"	1.2647972	"HORMONE DATA SET"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	10	0.0000000000000722820207206722	1	0.000447096941264326
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	10	0.00000000094611171961209	1	0.00284504255122425
"chlorophyll biosynthesis"	"TAIR-GO"	10	0	1	0
"chlorophyll biosynthesis"	"AraCyc"	10	0.0000000000454869663044589	1	0.0101005750613539
"Diterpenoid biosynthesis"	"KEGG"	10	5.49068214898966E-020	1	0.00000871197651251133
"Porphyrin and chlorophyll metabolism"	"KEGG"	10	1.84320647718701E-017	1	0.0000463318750892647
"chlorophyll and phytochromobilin metabolism"	"LitPath"	10	0.0000155096390070523	1	0.0129367795096452
"chlorophyll biosynthesis"	"LitPath"	10	0.000000000125186968898554	1	0.000925498056026462
"Gibberellin metabolism"	"LitPath"	10	0.0000000107692866014015	1	0.00344112183428118
"giberelin biosynthesis"	"LitPath"	10	0.000000000229730154645217	1	0.00198937964363037
"MUTANT DATA SET"	"quantDE"	1.082638	"maxDE"	2.517165814	"MUTANT DATA SET"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	28	0.000000000000274924988275726	3	0.00294803936878849
"Carotenoid biosynthesis"	"BioPath"	18	4.16870303157433E-021	2	0.0000582839932775939
"carotenoid biosynthesis"	"AraCyc"	18	2.58979373094252E-025	2	0.00000755541894753755
"carotenid biosynthesis"	"LitPath"	18	2.23576432346797E-016	2	0.00017011905144083
"Carotenoid and abscisic acid metabolism"	"LitPath"	18	0.00000000000280738128558298	2	0.00129633059693743
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	16	0.0077375954904064	2	0.125657626219045
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	16	0.00000000000085406580866862	2	0.00130857160201026
"Nitrogen metabolism"	"KEGG"	12	0.000000000769561468281232	2	0.000317373592254726
"Chlorophyll biosynthesis and breakdown"	"BioPath"	10	0.0000253061661609979	1	0.0248086734053863
"carotene biosynthesis"	"TAIR-GO"	10	4.33225523132208E-017	1	0.000121059652634395
"chlorophyll biosynthesis"	"TAIR-GO"	10	0.00000000468550670415076	1	0.00352395925539636
"methionine biosynthesis"	"TAIR-GO"	10	1.15413355706017E-015	1	0.000241213957679064
"methionine biosynthesis from L-homoserine via cystathione"	"TAIR-GO"	10	0	1	0
"chlorophyll biosynthesis"	"AraCyc"	10	0.000000204024874343517	1	0.0199674076280089
"homocysteine and cysteine interconversion"	"AraCyc"	10	0.0000000000000155888110738071	1	0.000752625714284439
"methionine biosynthesis II"	"AraCyc"	10	0.000000000000531448594593569	1	0.00129478080720283
"sulfate assimilation III"	"AraCyc"	10	0.0000000508212068322057	1	0.00833686515135269
"amino acid metabolism"	"FunCat"	10	0.0000000226990294107641	1	0.0148814217289301
"Biosynthesis of steroids"	"KEGG"	10	0.00000277101094952417	1	0.0165966717767074
"Cysteine metabolism"	"KEGG"	10	0.00000000177834411943595	1	0.00590913022942924
"Diterpenoid biosynthesis"	"KEGG"	10	0.0000000000380109987454729	1	0.00115474555161708
"Methionine metabolism"	"KEGG"	10	0.0000000000917954889017462	1	0.00325665095274107
"Selenoamino acid metabolism"	"KEGG"	10	0.0000000120363518725267	1	0.00726715906128014
"Sulfur metabolism"	"KEGG"	10	0.00000000189227756977535	1	0.00393912642243844
"chlorophyll and phytochromobilin metabolism"	"LitPath"	10	0.00548281920240708	1	0.0533988769487149
"chlorophyll biosynthesis"	"LitPath"	10	0.000000174646760211	1	0.00420103541434428
"Gibberellin metabolism"	"LitPath"	10	0.0000107776555744029	1	0.0151330908699267
"giberelin biosynthesis"	"LitPath"	10	0.000000308887386945488	1	0.00888838610858189
"ascorbic acid biosynthesis"	"BioPath"	8	0.0000017632233385298	1	0.0104152063905294
"abscisic acid biosynthesis"	"TAIR-GO"	8	0.00000000249127476783112	1	0.00176890642509029
"response to osmotic stress"	"TAIR-GO"	8	0.00000000000013777254638841	1	0.000241213957679064
"response to water deprivation"	"TAIR-GO"	8	0	1	0
"sugar mediated signaling"	"TAIR-GO"	8	0.000000000165562702586973	1	0.00059853411089924
"xanthophyll biosynthesis "	"TAIR-GO"	8	0	1	0
"xanthophyll cycle"	"AraCyc"	8	1.32753184647538E-016	1	0.0000170639300137967
"C-compound and carbohydrate metabolism"	"FunCat"	8	0.000427915424447663	2	0.00980934182483207
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	7	0.0212308972882924	1	0.0673475244194146
"fatty acid desaturation"	"TAIR-GO"	7	0.00000000000694350560389628	1	0.000121059652634395
"photoinhibition"	"TAIR-GO"	7	0.0000000000140789628472368	1	0.000121059652634395
"glycosylglyceride desaturation pathway"	"AraCyc"	7	0.0000000000192670178871238	1	0.00010187118286481
"Synthesis of membrane lipids in plastids"	"AcylLipid"	7	0.0000000648568521762578	1	0.00131801920542271