"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN ALL DATA SETS"		"sum.of.scores"	"sum.of.genes"		
"chlorophyll biosynthesis"	"TAIR-GO"	533	58		
"chlorophyll biosynthesis"	"AraCyc"	524	58		
"chlorophyll biosynthesis"	"LitPath"	517	56		
"photosynthesis"	"FunCat"	388	55		
"photosynthesis"	"TAIR-GO"	312	44		
"photorespiration"	"AraCyc"	214	40		
"photorespiration"	"TAIR-GO"	202	35		
"brassinosteroid biosynthesis"	"TAIR-GO"	183	20		
"brassinosteroid biosynthesis"	"BioPath"	174	19		
"carotenoid biosynthesis"	"AraCyc"	174	19		
"carotenoid biosynthesis"	"TAIR-GO"	146	16		
"ascorbic acid biosynthesis"	"BioPath"	98	14		
"glyoxylate cycle"	"AraCyc"	89	13		
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	84	12		
"starch biosynthesis"	"AraCyc"	82	10		
"starch biosynthesis"	"TAIR-GO"	81	10		
"xanthophyll cycle"	"AraCyc"	58	6		
"xanthophyll cycle"	"TAIR-GO"	58	6		
"chlorophyll catabolism"	"LitPath"	50	5		
"chlorophyll catabolism"	"TAIR-GO"	50	5		
"Fluorene degradation"	"KEGG"	38	6		
"ORGAN DATA SET"	"quantDE"	4.478203	"maxDE"	6.0739985	"ORGAN DATA SET"
"Photosystems "	"BioPath"	363	3.57136709294997E-126	54	1.53627325507418E-023
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	198	4.0875591249616E-025	23	0.0000522856611666107
"biogenesis of chloroplast"	"FunCat"	157	7.59438953495069E-068	24	0.0000000000000262373039309694
"additional photosystem II components"	"BioPath"	154	1.83631045139068E-057	22	0.00000000000679576813844308
"Photosynthesis"	"KEGG"	143	6.83581735338225E-133	24	2.16553176831394E-026
"Photosystem I"	"BioPath"	133	7.55889752255212E-026	22	0.000000106658483563123
"Chlorophyll a/b binding proteins"	"BioPath"	124	7.49434660832094E-076	15	0.00000000000226600375231236
"photosynthesis"	"FunCat"	112	1.11122391240635E-050	16	0.00000000136420245992342
"photosystem I"	"TAIR-GO"	87	0	11	0
"transport "	"FunCat"	83	0	15	0
"Chlorophyll biosynthesis and breakdown"	"BioPath"	79	0.000000000513375970179675	9	0.00596530655698068
"chlorophyll biosynthesis"	"TAIR-GO"	75	2.37235254836885E-033	8	0.00000727157325243432
"glycolysis and gluconeogenesis"	"FunCat"	75	0.000529315633295204	10	0.184274177709087
"Porphyrin and chlorophyll metabolism"	"KEGG"	73	3.59165379540439E-036	9	0.000000483751024815013
"chlorophyll and phytochromobilin metabolism"	"LitPath"	73	4.20432859057282E-019	8	0.000359104759673924
"Carbon fixation"	"KEGG"	72	3.67439814029151E-018	9	0.001780493269894
"photosystem II"	"TAIR-GO"	71	0	9	0
"Photosystem II"	"BioPath"	69	0.00000132474865489266	9	0.0204148777886416
"Biosynthesis of steroids"	"KEGG"	69	1.00077360135592E-016	8	0.000505242437386884
"chlorophyll biosynthesis"	"AraCyc"	66	4.7008083873731E-016	8	0.0148871658809706
"chlorophyll biosynthesis"	"LitPath"	59	1.47614693903147E-042	6	0.000000289387739922021
"chlorophyll binding"	"TAIR-GO"	58	2.10147383482766E-026	7	0.0000387778625770646
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	57	5.38410597700039E-020	9	0.00127761140620588
"Folding, Sorting and Degradation"	"KEGG"	52	0.00196215168101385	8	0.106177533409226
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	48	8.11679282057973E-016	6	0.000435737672505468
"Pentose phosphate pathway"	"KEGG"	48	7.8450832539764E-016	7	0.00105836637320323
"Carotenoid biosynthesis"	"BioPath"	44	0.0000000000000361692898353335	5	0.00106385170609731
"carotenoid biosynthesis"	"AraCyc"	44	5.81853331801476E-024	5	0.000029422375788883
"carotenid biosynthesis"	"LitPath"	44	4.14282852951412E-023	5	0.0000465280024477689
"Carotenoid and abscisic acid metabolism"	"LitPath"	44	0.000000000000302709206619306	5	0.00303006513906219
"light harvesting complex"	"BioPath"	42	1.75975905461594E-030	5	0.00000404911179361297
"Calvin cycle"	"AraCyc"	40	0.00000000387324042663417	6	0.0220807658859841
"photorespiration"	"AraCyc"	40	0.0000000000000498991485578705	9	0.000138358794072125
"fatty acid metabolism"	"TAIR-GO"	39	0.000529657581773184	6	0.0285783865081304
"respiration"	"FunCat"	38	3.23999574802016E-015	5	0.000304914966117847
"transport facilitation"	"FunCat"	38	0	7	0
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	37	0	4	0
"gluconeogenesis"	"AraCyc"	37	0.0000535598389407329	5	0.122019486170091
"photosystem II type I  chlorophyll a /b binding protein"	"BioPath"	36	0	4	0
"photosynthesis"	"TAIR-GO"	36	0.0000078552899999422	5	0.0302291470416651
"Transcription (chloroplast)"	"BioPath"	34	0.000000000000010987231003789	4	0.000543824625047078
"transcription initiation"	"TAIR-GO"	34	2.98728675413565E-015	4	0.00118532080993909
"acetate fermentation"	"AraCyc"	34	0.0182182659237518	6	0.255175163263487
"fructose degradation (anaerobic)"	"AraCyc"	34	0.00780178746324597	6	0.198142761688028
"glycolysis IV"	"AraCyc"	34	0.00873815200414064	6	0.20913083515388
"sorbitol fermentation"	"AraCyc"	34	0.0200738805771732	6	0.231762856165644
"aerobic respiration"	"FunCat"	34	0.00000000000326637905375645	4	0.00258266360896591
"energy"	"FunCat"	34	0	4	0
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	33	0.000000744117913465113	4	0.0128164223824334
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	33	1.05940718200469E-018	4	0.0001976339500786
"Benzoate degradation via CoA ligation"	"KEGG"	32.5	0.0300548677802977	6	0.183352099650932
"Nicotinate and nicotinamide metabolism"	"KEGG"	32.5	0.00430048316527873	6	0.136093738973891
"ATP synthase components"	"BioPath"	32	0.000000000154199150644752	5	0.000541057070230237
"photosystem I reaction center"	"BioPath"	32	6.49819655841419E-019	7	0.000000505850853420454
"cuticle biosynthesis"	"TAIR-GO"	32	0.00000000000249560987875533	5	0.00171052432788418
"Protein export"	"KEGG"	31	0.000000000231748288085964	4	0.0159537364386391
"long-chain fatty acid metabolism"	"TAIR-GO"	30	0.0000116749278986511	5	0.013317513088061
"very-long-chain fatty acid metabolism"	"TAIR-GO"	30	0.0000000863575480100467	5	0.00668524957118656
"wax biosynthesis"	"TAIR-GO"	30	0.0000000000000212250227915055	4	0.000494741427518704
"glycine biosynthesis I"	"AraCyc"	30	0.00000189029929709535	7	0.0139578962456109
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	30	0.000000000000080264759973697	7	0.000124927572270579
"acetyl-CoA assimilation"	"AraCyc"	29	0.000221562101999055	4	0.0905641014377736
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	29	0.0417524292019646	4	0.150876770109973
"ascorbic acid biosynthesis"	"BioPath"	28	0.0127784478257807	4	0.117803062439343
"Chloroplastic protein turnover"	"BioPath"	28	0.000000000947887678646089	7	0.0000195915493026184
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	28	0.0000000334299822386706	3	0.00654651078451665
"ATP-dependent proteolysis"	"TAIR-GO"	28	0.0000000000000530603729301402	7	0.00000623908432799784
"photorespiration"	"TAIR-GO"	28	1.77378704375233E-021	4	0.0000292150873534618
"serine-isocitrate lyase pathway"	"AraCyc"	28	0.0282748174596106	4	0.253338280718656
"Fructose and mannose metabolism"	"KEGG"	28	0.00463927706721685	4	0.0905154123874186
"Nitrogen metabolism"	"KEGG"	28	0.00262898959812076	5	0.00554394703025705
"lactose degradation IV"	"AraCyc"	27	1.38196954648175E-030	6	0.0000000135822379783808
"Ascorbate and aldarate metabolism"	"KEGG"	27	0.00000541441757686083	4	0.00845846266088025
"photosystem I subunit precursor"	"BioPath"	26	0	5	0
"degradation "	"FunCat"	25	0.00000619603509514021	5	0.0073571366962183
"protein degradation "	"FunCat"	25	0.00000000335817902350669	5	0.0013058621640841
"ClpP protease complex "	"BioPath"	24	0.0000000000002262931364351	6	0.0000144736391828129
"Oxygen-evolving enhancer protein"	"BioPath"	24	0.0000000000000268386947636289	3	0.00115443694699423
"photosynthesis light harvesting"	"TAIR-GO"	24	0.0000000112690965620267	3	0.0110138987423122
"photosynthesis light harvesting in photosystem I"	"TAIR-GO"	24	0.0000000000731375459330982	3	0.00609960977612562
"protein biosynthesis"	"TAIR-GO"	24	0	4	0
"assimilation of ammonia, metabolism of the glutamate group"	"FunCat"	24	0.00155009907649418	3	0.0528795896672884
"mRNA processing in chloroplast"	"BioPath"	22	0.00000395109275220475	4	0.0118972389603067
"cysteine biosynthesis I"	"AraCyc"	22	0.0466558889075034	7	0.0077149318148789
"glyoxylate cycle"	"AraCyc"	22	0.00246107258325785	3	0.0916602418048511
"pentose-phosphate pathway "	"FunCat"	22	0.000178820877884304	3	0.0528795896672884
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	21	0.000104433329904613	3	0.0916602418048511
"Protein folding and associated processing"	"KEGG"	21	0.0000238431217744971	4	0.0100362503109104
"Cytochrome b6/f complex"	"BioPath"	20	0.0000205124297844319	2	0.0952555303375898
"Plastocyanin"	"BioPath"	20	0	2	0
"Regulatory enzymes"	"BioPath"	20	0.0000000000153432349229427	2	0.00203603323972117
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	20	0.0000282352119961916	2	0.0302902411535391
"Translation (chloroplast)"	"BioPath"	20	0.000000257970583278852	4	0.000543824625047078
"cytochrome b6f complex"	"TAIR-GO"	20	0.00000000640107019720278	2	0.0287970105266826
"photosynthetic water oxidation"	"TAIR-GO"	20	0	2	0
"ammonia assimilation cycle"	"AraCyc"	20	0.000000254418347870846	2	0.0257619502607087
"fatty acid biosynthesis -- initial steps"	"AraCyc"	20	0.0355716449283856	5	0.0306361631854241
"glucose and glucose-1-phosphate degradation"	"AraCyc"	20	0.00000000422089849492021	3	0.0134193130612695
"glutamine biosynthesis I"	"AraCyc"	20	0.0000000238818049437531	2	0.0120302938998697
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	20	0.0000000000119808002521732	2	0.00728026218203271
"mannitol degradation"	"AraCyc"	20	0.0000680930351952123	4	0.036681309335729
"nitrate assimilation pathway"	"AraCyc"	20	0.0000098663916402275	2	0.034776317481205
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	20	0.00000000132762404461493	4	0.0018836701165405
"phospholipid desaturation pathway"	"AraCyc"	20	0.000000000241030968633264	2	0.00385591059374662
"sorbitol degradation"	"AraCyc"	20	0.000125764074613346	4	0.0426976523640337
"trehalose biosynthesis III"	"AraCyc"	20	0.0105612383178589	3	0.221665414038321
"nitrogen and sulfur metabolism"	"FunCat"	20	0.0313228729934144	2	0.157159979079423
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio"	"KEGG"	20	0.0000000000266797896279691	2	0.00941693233671207
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation"	"KEGG"	20	0.0000000000000868489787792998	2	0.00252130143664582
"Androgen and estrogen metabolism"	"KEGG"	20	0.000000000000263147252116513	2	0.00424257564954728
"Benzoate degradation via hydroxylation"	"KEGG"	20	0.0000000157727989742427	2	0.0129394006585311
"Synthesis of membrane lipids in plastids"	"AcylLipid"	20	0.00157786906592286	2	0.101567980965645
"brassinosteroid biosynthesis"	"TAIR-GO"	19	0.0492621201803322	2	0.180909835865789
"steroid biosynthesis"	"TAIR-GO"	19	0.0492621201803322	2	0.180909835865789
"Fluorene degradation"	"KEGG"	19	0.0000121101872675542	2	0.0404539335008713
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	19	0.000106776565131339	2	0.0560120246367885
"carotene biosynthesis"	"TAIR-GO"	18	0.0000000000239330692484776	2	0.00192338085123703
"nonphotochemical quenching"	"TAIR-GO"	18	0	2	0
"photosynthetic electron transport"	"TAIR-GO"	18	0.000000404231235830325	2	0.0287970105266826
"atty acid elongation -- unsaturated"	"AraCyc"	18	0.000435705988405336	4	0.0116601465131699
"fatty acid elongation -- saturated"	"AraCyc"	18	0.00122407119914794	4	0.0146040681737698
"fatty acid elongation -- unsaturated"	"AraCyc"	18	0.000328386287843423	4	0.00914758752186978
"starch biosynthesis"	"AraCyc"	18	0	2	0
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	18	0.00178004703927864	2	0.0805069467760989
"electron transport and membrane-associated energy conservation "	"FunCat"	18	0.0000000029531135484402	2	0.0201902182279404
"transported compounds (substrates)"	"FunCat"	18	0	4	0
"photosystem II assembly"	"TAIR-GO"	17	0.0000000000000783681343599844	2	0.00192338085123703
"photosystem II stabilization"	"TAIR-GO"	17	0	2	0
"starch biosynthesis"	"TAIR-GO"	17	0.00130727225400122	2	0.0458200610896003
"photosystem II type II  chlorophyll a /b binding protein"	"BioPath"	16	0.000000516240720421569	2	0.00737399128043974
"ATP synthesis coupled proton transport"	"TAIR-GO"	16	0.00000709619553044395	2	0.0158469191946592
"carotenoid biosynthesis"	"TAIR-GO"	16	0.00474469459106854	2	0.0667037584979731
"chloroplastic endopeptidase Clp complex"	"TAIR-GO"	16	0.00000000356284087967793	4	0.000494741427518704
"magnesium chelatase complex"	"TAIR-GO"	16	0	2	0
"pentose-phosphate shunt"	"TAIR-GO"	16	0.0191421732021856	2	0.180909835865789
"photosynthesis light harvesting in photosystem II"	"TAIR-GO"	16	0.000000513841235039477	2	0.0158469191946592
"proton transport"	"TAIR-GO"	16	0.00000709619553044395	2	0.0158469191946592
"PSII associated light-harvesting complex II"	"TAIR-GO"	16	0	2	0
"response to water deprivation"	"TAIR-GO"	16	0	2	0
"ascorbate glutathione cycle"	"AraCyc"	16	0.00301553305753212	3	0.0285175020106692
"cysteine biosynthesis II"	"AraCyc"	16	0.000410305744326286	6	0.00114555142115129
"epicuticular wax biosynthesis"	"AraCyc"	16	0.0000000000000476698522081483	2	0.00043295673162832
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	16	0	2	0
"galactose degradation I"	"AraCyc"	15	0.000000000101486586652532	4	0.0000450633408684172
"transport routes "	"FunCat"	15	0.00334754406119834	4	0.00620763103890956
"Tryptophan metabolism"	"KEGG"	15	0.0462719845756137	3	0.0996127146364096
"Delta-pH pathway"	"BioPath"	14	0.000000134547499784319	2	0.00203603323972117
"Ferredoxin"	"BioPath"	14	0.00122871844305273	3	0.019131277961052
"Sec (secretory) pathway"	"BioPath"	14	0.0000000028992585916694	2	0.00737399128043974
"photosystem II antenna complex"	"TAIR-GO"	14	0.000000000341614993217902	2	0.00192338085123703
"4-hydroxyproline degradation"	"AraCyc"	14	0.0000713997027303552	3	0.00699163719575187
"biosynthesis of glycosides"	"FunCat"	14	0.0000000000000804530758186904	2	0.000328800050967224
"metabolismn of primary metabolic sugars derivatives "	"FunCat"	14	0.0000000000000804530758186904	2	0.000328800050967224
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	14	0.0182909403083167	2	0.0806225501986287
"starch catabolism"	"TAIR-GO"	13	0.000000085182813520238	2	0.00192338085123703
"lipoxygenase pathway"	"AraCyc"	13	0.00823576317429958	2	0.0569708019633695
"starch degradation"	"AraCyc"	13	0.0125603618550101	2	0.0997141036121786
"fatty acid elongation"	"TAIR-GO"	12	0.00342995957238182	2	0.0458200610896003
"plastid organization and biogenesis"	"TAIR-GO"	12	0.00000516560461145625	2	0.00698108743658176
"RNA processing"	"TAIR-GO"	12	0	2	0
"cyanate degradation"	"AraCyc"	12	0.0000023643529808901	2	0.0700362486339995
"peptidoglycan biosynthesis"	"AraCyc"	12	0.00000346442964992535	2	0.0181798332066249
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	12	0.0000000145109295915175	2	0.00385591059374662
"serine biosynthesis"	"AraCyc"	12	0.00000499458501505709	5	0.00000119482535912847
"sucrose degradation III"	"AraCyc"	12	0.0232567452177298	2	0.116144088597142
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	12	0.000123452324467249	2	0.0120302938998697
"accessory proteins of photosynthetic electron transport "	"FunCat"	12	0	2	0
"C-compound and carbohydrate utilization "	"FunCat"	12	0.00000000000021734383300744	2	0
"electron / hydrogen transport "	"FunCat"	12	0.00000395845997900285	2	0.0056177520600597
"translation"	"FunCat"	12	0.0141195510521477	2	0.157159979079423
"Other cell wall metabolism related enzymes"	"BioPath"	10	0.0000365513798235388	1	0.0161059345828689
"psbP family of thylakoid proteins"	"BioPath"	10	0.000304528187517922	3	0.00311640440767689
"Transcriptional regulators (chloroplast)"	"BioPath"	10	0.0000365513798235388	1	0.0161059345828689
"cell communication"	"TAIR-GO"	10	0	1	0
"cell differentiation"	"TAIR-GO"	10	0.000000365011697492602	2	0.00192338085123703
"chlorophyll catabolism"	"TAIR-GO"	10	0.000812298618326718	1	0.0427180512515484
"chloroplast ATP synthase complex"	"TAIR-GO"	10	0.00000854716059923448	1	0.0155216043180075
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	10	0.000812298618326718	1	0.0427180512515484
"cytochrome b6f complex assembly"	"TAIR-GO"	10	0	1	0
"enzyme binding"	"TAIR-GO"	10	0	1	0
"extrinsic to photosynthetic water oxidation"	"TAIR-GO"	10	0	1	0
"glucose metabolism"	"TAIR-GO"	10	0.014859246898337	1	0.120193745647752
"glucosinolate catabolism"	"TAIR-GO"	10	0.00000435313651719304	1	0.0155216043180075
"isoprenoid biosynthesis"	"TAIR-GO"	10	0.0499420663453829	1	0.120193745647752
"pentose-phosphate shunt, oxidative branch"	"TAIR-GO"	10	0.014859246898337	1	0.120193745647752
"photoinhibition"	"TAIR-GO"	10	0.000279982266685612	1	0.0427180512515484
"photosynthetic electron transport in cytochrome b6/f"	"TAIR-GO"	10	0.0000000390082006157406	1	0.0155216043180075
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	10	0.00111424212156026	1	0.0784550150665152
"positive regulation of transcription"	"TAIR-GO"	10	0.000581414273422942	1	0.0427180512515484
"protein binding"	"TAIR-GO"	10	0.00199563232597668	1	0.120193745647752
"protein complex assembly"	"TAIR-GO"	10	0	1	0
"regulation of transcription"	"TAIR-GO"	10	0	1	0
"response to bacteria"	"TAIR-GO"	10	0	1	0
"response to chemical substance"	"TAIR-GO"	10	0	1	0
"response to gravity"	"TAIR-GO"	10	0	1	0
"response to stress"	"TAIR-GO"	10	0.00834951009955482	1	0.0784550150665152
"RNA binding"	"TAIR-GO"	10	0	1	0
"tetrapyrrole binding"	"TAIR-GO"	10	0	1	0
"xanthophyll cycle"	"TAIR-GO"	10	0	1	0
"xanthophyll metabolism"	"TAIR-GO"	10	0	1	0
"arginine degradation IX"	"AraCyc"	10	0.00880093434539896	2	0.0569708019633695
"ascorbate biosynthesis"	"AraCyc"	10	0.00103110621652416	1	0.145075036660899
"glycosylglyceride desaturation pathway"	"AraCyc"	10	0.000201841752792945	1	0.0310777992331186
"proline degradation II"	"AraCyc"	10	0.00668811950877143	2	0.0451955725882499
"thiamine biosynthesis"	"AraCyc"	10	0.0000227155657703756	1	0.0701984563980335
"xanthophyll cycle"	"AraCyc"	10	0.0000000351558938954114	1	0.00574063227883265
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	10	0	1	0
"Peptidoglycan biosynthesis"	"KEGG"	10	0.0000727722886004546	1	0.0246024660094114
"chlorophyll catabolism"	"LitPath"	10	0.0000353565748651515	1	0.0158155353653775
"phytol biosynthesis"	"LitPath"	10	0	1	0
"abscisic acid mediated signaling"	"TAIR-GO"	9	0.010617365937118	1	0.0784550150665152
"calcium ion transport"	"TAIR-GO"	9	0.0000198587240055841	1	0.0155216043180075
"carbohydrate biosynthesis"	"TAIR-GO"	9	0	1	0
"regulation of stomatal movement"	"TAIR-GO"	9	0	1	0
"signal transduction"	"TAIR-GO"	9	0	1	0
"sucrose biosynthesis"	"TAIR-GO"	9	0	1	0
"alanine degradation III"	"AraCyc"	9	0.00000101421508620051	1	0.0163559833732413
"Other ion-coupled transporters"	"KEGG"	9	0.00481998387334904	1	0.127735295297257
"biosynthesis of extracellular lipids"	"LitPath"	9	0	1	0
"photosynthetic electron transport in photosystem I"	"TAIR-GO"	8	0.00279242170824138	1	0.0427180512515484
"photosystem I (sensu Viridiplantae)"	"TAIR-GO"	8	0	1	0
"photosystem I antenna complex"	"TAIR-GO"	8	0	1	0
"response to high light intensity"	"TAIR-GO"	8	0.00378990074739546	1	0.0427180512515484
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	8	0.0406441996076986	2	0.0700362486339995
"accessory proteins of electron transport and membrane-associated energy conservation"	"FunCat"	8	0.0000069117365694766	1	0.0136959049267375
"secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	8	0	1	0
"isopentenyl diphosphate biosynthesis, mevalonate-independent pathway"	"TAIR-GO"	7	0	1	0
"response to pest, pathogen or parasite"	"TAIR-GO"	7	0.00000059089252665656	1	0.0155216043180075
"signal sequence binding"	"TAIR-GO"	7	0	1	0
"protein targeting, sorting and translocation"	"FunCat"	7	0.0495889433559432	1	0.124777410523126
"stress response"	"FunCat"	7	0	1	0
"STRESS DATA SET"	"quantDE"	1.844419	"maxDE"	4.077084	"STRESS DATA SET"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	223	2.72010986405189E-056	25	0.0000000423496396513629
"Photosystems "	"BioPath"	196	6.00433273222403E-036	32	0.000000000642350751187955
"C-compound and carbohydrate metabolism"	"FunCat"	141	0.00000000000157845402586312	25	0.002205111438458
"Intermediary Carbon Metabolism"	"BioPath"	124	0.000541743613749233	20	0.0996023353515257
"photosynthesis"	"FunCat"	112	7.90322034598995E-066	16	0.0000000000385563179251217
"biogenesis of chloroplast"	"FunCat"	111	3.5677483693461E-045	17	0.00000000170538657703263
"Chlorophyll biosynthesis and breakdown"	"BioPath"	99	4.19697913695147E-028	11	0.0000418298550285038
"Photosynthesis"	"KEGG"	93	5.02123897597119E-066	17	4.55915469421716E-016
"chlorophyll and phytochromobilin metabolism"	"LitPath"	93	3.5418542107486E-032	10	0.0000146854634670565
"chlorophyll biosynthesis"	"TAIR-GO"	85	1.31582408616883E-058	9	0.00000000508522290856209
"glycolysis and gluconeogenesis"	"FunCat"	81	0.0000000000148315713908439	12	0.011688823908191
"Porphyrin and chlorophyll metabolism"	"KEGG"	79	1.89261248060431E-046	9	0.000000212964733128418
"chlorophyll biosynthesis"	"AraCyc"	76	1.0755666705479E-023	9	0.00339975934721912
"Photosystem I"	"BioPath"	75	0.0000000990425037602093	13	0.00107356153761621
"Carbon fixation"	"KEGG"	72	1.55396702261426E-021	10	0.000214923071330746
"chlorophyll biosynthesis"	"LitPath"	69	2.10339411364079E-056	7	0.00000000817904535601572
"additional photosystem II components"	"BioPath"	67	0.000000000716012480156977	11	0.000265077342758528
"photosystem I"	"TAIR-GO"	62	0	8	0
"Glycolysis / Gluconeogenesis"	"KEGG"	62	0.0000000000010352470580749	9	0.00339454547921288
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	58	2.70913727907318E-030	7	0.00000761763017550868
"Chlorophyll a/b binding proteins"	"BioPath"	54	2.61254151060914E-015	7	0.000260581644143334
"Carotenoid and abscisic acid metabolism"	"LitPath"	52	2.97603284159088E-018	6	0.000663795113167045
"Carotenoid biosynthesis"	"BioPath"	48	4.07031478607002E-022	5	0.00028832555050252
"carotenoid biosynthesis"	"AraCyc"	48	2.70030317626663E-029	5	0.0000219377509402056
"carotenid biosynthesis"	"LitPath"	48	1.45513052985292E-026	5	0.0000653879499515271
"Photosystem II"	"BioPath"	47	0.00127043132655923	7	0.0360466265851746
"photosystem II"	"TAIR-GO"	47	0	6	0
"Calvin cycle"	"AraCyc"	46	0.0000000000002277885217559	8	0.00117616570997792
"Pentose phosphate pathway"	"KEGG"	46	9.14351995824845E-017	7	0.000594286337446896
"Transcription (chloroplast)"	"BioPath"	44	2.99804349503268E-030	5	0.00000620202056324535
"transcription initiation"	"TAIR-GO"	44	1.49260317241447E-033	5	0.00000521298703732682
"acetate fermentation"	"AraCyc"	44	0.000010106816017445	9	0.0225000419549727
"photorespiration"	"AraCyc"	44	6.34206103155281E-018	9	0.0000901026940472451
"mRNA processing in chloroplast"	"BioPath"	42	1.32545049961007E-028	8	0.000000151859520050441
"gluconeogenesis"	"AraCyc"	42	0.000000144248516775575	6	0.0400941299166916
"Starch and sucrose metabolism"	"KEGG"	42	0.000267992316903056	6	0.0667013887433669
"Biosynthesis of steroids"	"KEGG"	40	0.0000188641205615944	4	0.0675564501171241
"starch metabolism"	"BioPath"	36	0.000336455004636713	6	0.0254659005398964
"photosynthesis"	"TAIR-GO"	36	0.000000000154269850630604	5	0.00325087249950426
"fructose degradation (anaerobic)"	"AraCyc"	36	0.000949280440868849	7	0.0808267952214173
"glycolysis IV"	"AraCyc"	36	0.00109086242733697	7	0.0869009006161405
"sorbitol fermentation"	"AraCyc"	36	0.00305776791652013	7	0.0998273857510306
"Fructose and mannose metabolism"	"KEGG"	36	0.000000431785245811823	6	0.00573726099659315
"photorespiration"	"TAIR-GO"	34	0	5	0
"Protein export"	"KEGG"	34	0.0000000000000394956760060222	4	0.0112298925594139
"light harvesting complex"	"BioPath"	32	1.4630639429572E-020	4	0.0000540348100675866
"aerobic respiration"	"FunCat"	32	9.74425984143613E-015	4	0.00094824230937466
"respiration"	"FunCat"	32	9.74425984143613E-015	4	0.00094824230937466
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	30	5.95966343633704E-028	3	0.0000365325274447656
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	30	2.69632506099049E-024	3	0.000354124527283709
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	30	0.0000355752606789279	3	0.066500082467685
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	30	3.06101072629313E-015	3	0.00334755047174489
"electron transport"	"TAIR-GO"	29	0.000000755025285774898	4	0.0164225263787681
"photosynthetic electron transport"	"TAIR-GO"	29	6.30595439120952E-023	4	0.0000157193638958228
"Synthesis of membrane lipids in plastids"	"AcylLipid"	29	3.52670398288629E-017	4	0.0000457932022737447
"photosystem I reaction center"	"BioPath"	28	1.88009005031324E-017	6	0.0000028613762132842
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	28	0.0000000000699666071760562	3	0.00271252769746853
"glycine biosynthesis I"	"AraCyc"	28	0.00000540042135537678	6	0.032169571067984
"lactose degradation IV"	"AraCyc"	28	0	5	0.000000881785918922497
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	28	0.00000000000092633494014906	6	0.000626233162013956
"transport "	"FunCat"	26	0	5	0
"Translation factors"	"KEGG"	26	0.0393163371861533	6	0.117250717208503
"starch biosynthesis"	"AraCyc"	25	0	3	0
"ascorbic acid biosynthesis"	"BioPath"	24	0.00539148120496984	4	0.052007211911571
"protein biosynthesis"	"TAIR-GO"	24	0	4	0
"cysteine biosynthesis I"	"AraCyc"	24	0.00828944973650905	6	0.0196245994315229
"glycerol degradation II"	"AraCyc"	24	0.022024798432525	4	0.221428162810285
"Delta-pH pathway"	"BioPath"	20	2.41230687169657E-017	2	0.000998854696682375
"Oxygen-evolving enhancer protein"	"BioPath"	20	0.00000000000351014099606634	3	0.000456597027079313
"Regulatory enzymes"	"BioPath"	20	0.0000000000000856207164012855	2	0.000998854696682375
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	20	0.00000041201935379531	2	0.0158580458011173
"Translation (chloroplast)"	"BioPath"	20	0.00000000242265676303042	4	0.000173616783828439
"carotene biosynthesis"	"TAIR-GO"	20	1.77467207569581E-017	2	0.000474197044978415
"glucose and glucose-1-phosphate degradation"	"AraCyc"	20	0.00000000154705599751542	3	0.0112535564472025
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	20	0.000000000479652149896386	4	0.00149774143597796
"trehalose biosynthesis III"	"AraCyc"	20	0.00574156800611405	3	0.196157944762204
"transport facilitation"	"FunCat"	20	0	4	0
"Glutathione metabolism"	"KEGG"	20	0.0409410290183828	2	0.328066412361385
"Glycerolipid metabolism"	"KEGG"	20	0.0115101095893685	4	0.0192266379586647
"starch degradation"	"AraCyc"	19	0.0000105112017124443	3	0.019160427169912
"Sec (secretory) pathway"	"BioPath"	18	2.31533145823901E-017	3	0.0000991690393459662
"carotenoid biosynthesis"	"TAIR-GO"	18	0.00000227381018648766	2	0.0197653945272581
"energy"	"FunCat"	18	0	3	0
"Galactose metabolism"	"KEGG"	18	0.0114496223009281	3	0.0588829591456156
"Synthesis of fatty acids in plastids"	"AcylLipid"	18	0.000043054784622069	2	0.0726657054198901
"photosystem II assembly"	"TAIR-GO"	17	4.7647036357408E-017	2	0.000474197044978415
"photosystem II stabilization"	"TAIR-GO"	17	0	2	0
"starch biosynthesis"	"TAIR-GO"	17	0.00000609514720610775	2	0.0130987796850096
"chlorophyll binding"	"TAIR-GO"	16	0.00636793542888921	2	0.0755893111230138
"magnesium chelatase complex"	"TAIR-GO"	16	0	2	0
"plastid organization and biogenesis"	"TAIR-GO"	16	0.000000000000816774140522766	3	0.0000365325274447656
"RNA processing"	"TAIR-GO"	16	0	3	0
"pentose-phosphate pathway "	"FunCat"	16	0.001063434172735	2	0.107384258479653
"transported compounds (substrates)"	"FunCat"	16	0	3	0
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	16	0.00049756285507848	3	0.00749492070878667
"fatty acid desaturation"	"TAIR-GO"	15	0.00000000000638859493521816	2	0.000474197044978415
"photosynthetic electron transport in photosystem I"	"TAIR-GO"	15	0.00000000000638859493521816	2	0.000474197044978415
"pentose-phosphate shunt"	"TAIR-GO"	14	0.002078054604696	2	0.0615775532802277
"ascorbate glutathione cycle"	"AraCyc"	14	0.0100267458285372	3	0.0241319612160412
"cysteine biosynthesis II"	"AraCyc"	14	0.00190273563235017	5	0.0047251851118759
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	14	0.0275390865704504	2	0.228091838412037
"glycine degradation I"	"AraCyc"	14	0.0000000489844154348243	3	0.00249795575139984
"plastoquinone biosynthesis"	"AraCyc"	14	0.000000000617906418603558	2	0.00140674921328915
"vitamin E biosynthesis"	"AraCyc"	14	0.0000468566705626699	2	0.0104476973832433
"mRNA synthesis "	"FunCat"	14	0.00795148319830387	2	0.186561881442239
"RNA synthesis "	"FunCat"	14	0.00795148319830387	2	0.186561881442239
"transcription"	"FunCat"	14	0.000000996589763109526	2	0.0389270939399312
"transcriptional control"	"FunCat"	14	0.000035213898877469	2	0.025523414982714
"translation"	"FunCat"	14	0.0000682982982331942	3	0.0220904549411628
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	14	0.0478430319447673	3	0.0427890420591682
"carbon monoxide dehydrogenase pathway"	"AraCyc"	13	0.00356520034335746	4	0.0470042154331389
"Membrane Transport"	"KEGG"	13	0.0005557070558571	2	0.0858938284816976
"Other ion-coupled transporters"	"KEGG"	13	0.00000449914129146913	2	0.017400915805264
"Ferredoxin"	"BioPath"	12	0.000980330409542858	3	0.0082971535193094
"atty acid elongation -- unsaturated"	"AraCyc"	12	0.0453695703425815	2	0.153115549110083
"biosynthesis of pyrimidine ribonucleotides"	"AraCyc"	12	0.0421871821748644	2	0.228091838412037
"de novo biosynthesis of pyrimidine ribonucleotides"	"AraCyc"	12	0.0362986663153164	2	0.208665500707922
"fatty acid elongation -- unsaturated"	"AraCyc"	12	0.0391647161474279	2	0.135785575406812
"formylTHF biosynthesis"	"AraCyc"	12	0.0221675207984987	2	0.135785575406812
"galactose degradation I"	"AraCyc"	12	0.000000081099069899984	2	0.0104476973832433
"peptidoglycan biosynthesis"	"AraCyc"	12	0.00000185551849538034	2	0.0158338782395022
"sucrose degradation III"	"AraCyc"	12	0.0153468572454994	2	0.103418871801111
"TCA cycle variation II"	"AraCyc"	12	0.0185217081001806	2	0.119191381978205
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	12	0.0000698548117239696	2	0.0104476973832433
"biosynthesis of vitamins, cofactors, and prosthetic groups"	"FunCat"	12	0.00112222613866632	2	0.0389270939399312
"C-compound and carbohydrate utilization "	"FunCat"	12	3.11861891967131E-015	2	0
"electron / hydrogen transport "	"FunCat"	12	0.0000000942993352364921	2	0.00297088109624612
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	12	0	2	0
"nucleotide metabolism"	"FunCat"	12	0	3	0
"Cytochrome b6/f complex"	"BioPath"	10	0.046038658576861	1	0.2260691939194
"Plastocyanin"	"BioPath"	10	0.00000280508020569182	1	0.0100263823720011
"Plastoquinone biosynthesis"	"BioPath"	10	0.000000000484316213358841	1	0.0100263823720011
"psbP family of thylakoid proteins"	"BioPath"	10	0.0000268806904751122	3	0.00126172146110277
"Tocopherol biosynthesis"	"BioPath"	10	0.0243605674719753	1	0.0817350172069026
"Transcriptional regulators (chloroplast)"	"BioPath"	10	0.00000280508020569182	1	0.0100263823720011
"carotenoid biosynthesis/TAS"	"TAIR-GO"	10	0	1	0
"chlorophyll catabolism"	"TAIR-GO"	10	0.0000187946872431641	1	0.0174049033811485
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	10	0.0000187946872431641	1	0.0174049033811485
"cysteine biosynthesis"	"TAIR-GO"	10	0.0000187946872431641	1	0.0174049033811485
"cytochrome b6f complex"	"TAIR-GO"	10	0.000570776469915882	1	0.0743764988177075
"enzyme binding"	"TAIR-GO"	10	0	1	0
"etioplast organization and biogenesis"	"TAIR-GO"	10	0	1	0
"glucose metabolism"	"TAIR-GO"	10	0.000570776469915882	1	0.0522305161136096
"hypersensitive response"	"TAIR-GO"	10	0.00368103998415379	1	0.0743764988177075
"isoprenoid biosynthesis"	"TAIR-GO"	10	0.00266082490492536	1	0.0522305161136096
"leucine catabolism"	"TAIR-GO"	10	0.000012886436801676	1	0.0174049033811485
"lipid metabolism"	"TAIR-GO"	10	0.0000187946872431641	1	0.0174049033811485
"nonphotochemical quenching"	"TAIR-GO"	10	0.0000000284733119524488	1	0.00611776582370179
"pentose-phosphate shunt, oxidative branch"	"TAIR-GO"	10	0.000570776469915882	1	0.0522305161136096
"phospholipid metabolism"	"TAIR-GO"	10	0.000000128084863591858	1	0.00611776582370179
"photosynthesis light harvesting"	"TAIR-GO"	10	0.00870335192707015	1	0.125261650451963
"photosynthesis, dark reaction"	"TAIR-GO"	10	0	1	0
"photosynthetic electron transport in cytochrome b6/f"	"TAIR-GO"	10	0.000000000448547468432843	1	0.00611776582370179
"photosynthetic water oxidation"	"TAIR-GO"	10	0	1	0
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	10	0.0000269106974091861	1	0.0330226161647177
"plastoquinone biosynthesis"	"TAIR-GO"	10	0.000000128084863591858	1	0.00611776582370179
"positive regulation of transcription"	"TAIR-GO"	10	0.000012886436801676	1	0.0174049033811485
"protein binding"	"TAIR-GO"	10	0.0000524970673384816	1	0.0522305161136096
"protein complex assembly"	"TAIR-GO"	10	0	1	0
"regulation of transcription"	"TAIR-GO"	10	0	1	0
"RNA binding"	"TAIR-GO"	10	0	1	0
"tetrapyrrole binding"	"TAIR-GO"	10	0	1	0
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	10	0	1	0
"vitamin E biosynthesis"	"TAIR-GO"	10	0.000360800820876881	1	0.0330226161647177
"xanthophyll cycle"	"TAIR-GO"	10	0	1	0
"xanthophyll metabolism"	"TAIR-GO"	10	0	1	0
"leucine degradation II"	"AraCyc"	10	0.0214147126579655	1	0.212742400003098
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	10	0.000000970395645723103	1	0.0448129671245193
"serine biosynthesis"	"AraCyc"	10	0.0000932141735268318	4	0.0000351327038252384
"thiamine biosynthesis"	"AraCyc"	10	0.0000134036876143571	1	0.0640673699433033
"threonine degradation"	"AraCyc"	10	0.0236573999839349	4	0.0146870986366429
"triacylglycerol biosynthesis"	"AraCyc"	10	0.00278822717125894	1	0.0640673699433033
"xanthophyll cycle"	"AraCyc"	10	0.0000000196355390435546	1	0.0051854272030161
"C-compound, carbohydrate anabolism"	"FunCat"	10	0.0192056896911423	1	0.284907391838221
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	10	0	1	0
"Fluorene degradation"	"KEGG"	10	0.0358156382434163	1	0.160204036612798
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	10	0.00662486625719538	1	0.124011505521312
"chlorophyll a biosynthesis"	"LitPath"	10	0	1	0
"chlorophyll catabolism"	"LitPath"	10	0.0000493376839780995	1	0.0176955150258511
"phytochromobilin biosynthesis"	"LitPath"	10	0.0356058215367471	1	0.10069311156522
"phytol biosynthesis"	"LitPath"	10	0	1	0
"carbohydrate biosynthesis"	"TAIR-GO"	9	0	1	0
"phenylpropanoid metabolism"	"TAIR-GO"	9	0.0255240801848391	1	0.0743764988177075
"phosphate transport"	"TAIR-GO"	9	0.0000278612930361388	1	0.0330226161647177
"signal transduction"	"TAIR-GO"	9	0	1	0
"sucrose biosynthesis"	"TAIR-GO"	9	0	1	0
"alanine degradation III"	"AraCyc"	9	0.000000604442243939588	1	0.0148130933454239
"photosystem I (sensu Viridiplantae)"	"TAIR-GO"	8	0	1	0
"response to high light intensity"	"TAIR-GO"	8	0.000182485962658358	1	0.0174049033811485
"cyclopropane fatty acid (CFA) biosynthesis"	"AraCyc"	8	0.00000107794513888878	2	0.00630416148695117
"methylglyoxal degradation"	"AraCyc"	8	0.0267724082160442	3	0.0148774250182061
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	8	0.029877853876559	2	0.0618605631580597
"N-Glycan biosynthesis"	"KEGG"	8	0.0463659513371762	1	0.213130587254102
"Streptomycin biosynthesis"	"KEGG"	8	0.0463659513371762	1	0.126541419508778
"proton gradient regulation"	"BioPath"	7	0	1	0
"amylopectin biosynthesis"	"TAIR-GO"	7	0.0000317178600820361	1	0.0174049033811485
"one-carbon compound metabolism"	"TAIR-GO"	7	0.00134449839299291	1	0.0330226161647177
"pectin biosynthesis"	"TAIR-GO"	7	0.0000317178600820361	1	0.0174049033811485
"photoinhibition"	"TAIR-GO"	7	0.00134449839299291	1	0.0174049033811485
"glycosylglyceride desaturation pathway"	"AraCyc"	7	0.00889879293886578	1	0.0282194374775585
"HORMONE DATA SET"	"quantDE"	1.920376	"maxDE"	4.241356	"HORMONE DATA SET"
"steroid biosynthesis"	"TAIR-GO"	36	7.32957007282907E-043	4	0.0000000635732490732488
"brassinosteroid biosynthesis"	"LitPath"	36	6.50412490576585E-028	4	0.00000703513184480675
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	36	3.27489322431364E-024	4	0.000231236787467865
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	30	1.25100979122674E-032	3	0.00000449338936231887
"growth"	"TAIR-GO"	27	4.33867594210334E-022	3	0.0000896823910377488
"brassinosteroid biosynthesis"	"TAIR-GO"	26	7.32957007282907E-043	3	0.0000000635732490732488
"brassinosteroid biosynthesis II"	"AraCyc"	20	1.79237424250823E-041	2	0.000000412882209915199
"brassinosteroid biosynthesis I"	"AraCyc"	20	5.04165010731401E-035	2	0.00000212982817310789
"Fluorene degradation"	"KEGG"	17	8.19984123457813E-021	2	0.0000251623261612479
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	17	1.29733902895206E-019	2	0.0000374168744693565
"Ascorbate and aldarate metabolism"	"KEGG"	17	6.9575051294542E-017	2	0.000124039984091969
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	17	0.000000000021021484092038	2	0.00702283322031206
"Glycan Biosynthesis and Metabolism"	"KEGG"	11	0.00000107520913862477	2	0.00194657601795437
"plant hormonal regulation"	"FunCat"	10	0.0000000000491333531963224	1	0.00123650514840493
"brassinosteroid biosynthesis"	"BioPath"	10	8.58794533860773E-039	1	0.000000070850808390011
"secondary metabolism"	"FunCat"	10	0.00000010904673536205	1	0.0120342547829449
"tetracyclic and pentacyclic triterpenes (cholesterin, steroids and hopanoids) biosynthesis"	"FunCat"	10	2.09724187356291E-020	1	0.0000443736916448559
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	10	0.000000670938836446703	1	0.00946818030681586
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	10	0.0000000926564282495187	1	0.005736729754722
"plant / fungal specific systemic sensing and response "	"FunCat"	10	0.0000000000491333531963224	1	0.00123650514840493
"Benzoate degradation via CoA ligation"	"KEGG"	10	0.0000278861309689597	1	0.0503868010743514
"Degradation of storage lipids and straight fatty acids"	"AcylLipid"	10	0.0000000298742886002909	1	0.00566748258331764
"protein prenylation"	"LitPath"	10	0.0000000981265657001035	1	0.0144271484039269
"sterol and brassinosteroid biosynthesis"	"LitPath"	10	0.000132787559957782	1	0.0223476892880649
"Fatty acid metabolism"	"KEGG"	10	0.000000832532519431475	1	0.00822998082229823
"Lysine degradation"	"KEGG"	10	0.0000000000171048239951987	1	0.00348761043905083
"Tryptophan metabolism"	"KEGG"	10	0.00000000679307308503423	1	0.00822998082229823
"Gluconeogenesis from lipids in seeds"	"BioPath"	10	0.000191322241670158	1	0.0362278005262169
"Protein prenylation"	"BioPath"	10	6.67075153832963E-015	1	0.000389350406285738
"sterol biosynthesis"	"BioPath"	10	0.000000563126524258211	1	0.00574420863711436
"unidimensional cell growth"	"TAIR-GO"	10	7.45119327179378E-019	1	0.000282009227277446
"ascorbic acid biosynthesis"	"BioPath"	10	0.00000000398638367555555	1	0.0037586477207704
"fatty acid beta oxidation complex"	"BioPath"	10	0.00000000200185174359875	1	0.0041241183718195
"fatty acid beta-oxidation"	"TAIR-GO"	10	0.000000000261504932298455	1	0.00159393734578704
"sterol biosynthesis"	"TAIR-GO"	10	0.0000136621331607503	1	0.0184466308930121
"ascorbate glutathione cycle"	"AraCyc"	10	1.38068099576002E-015	1	0.000223741213155932
"development"	"TAIR-GO"	10	0.00082942682939327	1	0.0552082923937438
"embryonic development"	"TAIR-GO"	10	0.00000382912514778911	1	0.0167090723217041
"isoprenoid biosynthesis "	"FunCat"	10	0.00000247156931260805	1	0.012423496921091
"embryonic development (sensu Magnoliophyta)"	"TAIR-GO"	10	0.0000000874840509621536	1	0.00918292715052247
"Synthesis of membrane lipids in endomembrane system"	"AcylLipid"	9	0.0000102887851952647	1	0.00932027866691772
"sphingosine biosynthesis"	"TAIR-GO"	9	0	1	0
"Glycosphingolipid metabolism"	"KEGG"	9	0.0000000000000238925611592125	1	0.00043717546484066
"biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine"	"FunCat"	7	0.0000044405826382358	1	0.00396625607663237
"biosynthesis of phenylpropanoids"	"FunCat"	7	0.0000044405826382358	1	0.00396625607663237
"monopolar cell growth"	"TAIR-GO"	7	0	1	0
"leaf morphogenesis"	"TAIR-GO"	7	0.0000000000425104608672018	1	0.000325040075042082
"MUTANT DATA SET"	"quantDE"	1.634573	"maxDE"	11.904267143	"MUTANT DATA SET"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	270	1.45502086971268E-035	34	0.000000126055230728185
"C-compound and carbohydrate metabolism"	"FunCat"	270	0.0000244338931267721	49	0.0425679388787071
"Intermediary Carbon Metabolism"	"BioPath"	210	0.000174275495101713	36	0.0370552650188342
"Photosystems "	"BioPath"	199	0.0000000632491751592473	25	0.047774214023454
"biogenesis of chloroplast"	"FunCat"	195	2.04217960460724E-052	29	0.000000000246963783438557
"transport "	"FunCat"	155	0	28	0
"Carbon fixation"	"KEGG"	139	1.87077083172127E-017	22	0.000223151237644127
"glycolysis and gluconeogenesis"	"FunCat"	137	0.000154663446389749	23	0.0670296108222066
"photosynthesis"	"FunCat"	128	2.24274715270591E-032	18	0.0000063776972441494
"Biosynthesis of steroids"	"KEGG"	125	0.00000000000232321860405744	13	0.0163011985774399
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	122	0.00124878519494898	14	0.139308156001787
"Glycolysis / Gluconeogenesis"	"KEGG"	119	0.0000024528459594938	20	0.014239363655747
"Chlorophyll biosynthesis and breakdown"	"BioPath"	115	6.40634745094842E-017	14	0.000210002147603747
"chlorophyll and phytochromobilin metabolism"	"LitPath"	109	4.92491309656935E-015	13	0.000817918912082507
"additional photosystem II components"	"BioPath"	104	0.0000000000196904786284438	13	0.00525506059094025
"Pyruvate metabolism"	"KEGG"	104	0.00236575188913721	16	0.0883870410965194
"transport facilitation"	"FunCat"	91	0	15	0
"Calvin cycle"	"AraCyc"	89	4.35999475312107E-020	16	0.0000893637761954594
"Biosynthesis of prenyl diphosphates"	"BioPath"	85	0.00515949222422528	10	0.146408991599091
"chlorophyll biosynthesis"	"TAIR-GO"	85	6.04228683624484E-028	9	0.0000374052886060193
"chlorophyll biosynthesis"	"AraCyc"	84	0.00000212879214912327	10	0.300932359059445
"Chlorophyll a/b binding proteins"	"BioPath"	80	1.26569981006013E-018	10	0.0000990734839491176
"acetate fermentation"	"AraCyc"	78	0.00064441657574012	16	0.0771649258938763
"Oxidative phosphorylation"	"KEGG"	77	0.000760672394142528	18	0.0308020323026346
"Porphyrin and chlorophyll metabolism"	"KEGG"	77	0.000000000336263464878915	9	0.00958299419451782
"sterol biosynthesis"	"BioPath"	76	0.0000000241267682917481	8	0.0301964118899846
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	72	0.000000019288334692196	8	0.0715802528384645
"glycolysis IV"	"AraCyc"	72	0.00226670706740193	14	0.143011505756289
"Selenoamino acid metabolism"	"KEGG"	72	0.000000107050736141085	9	0.0211646587148088
"Carotenoid and abscisic acid metabolism"	"LitPath"	71	0.0000000000000369276092127043	9	0.00168829148321772
"Pentose phosphate pathway"	"KEGG"	70	0.000000181506567932637	13	0.00542751276260827
"gluconeogenesis"	"AraCyc"	68	0.00010534221205135	11	0.0842104864759776
"fructose degradation (anaerobic)"	"AraCyc"	66	0.0208602312328424	13	0.207291209408869
"development"	"TAIR-GO"	65	0.0210371819668957	8	0.267836435337627
"Carotenoid biosynthesis"	"BioPath"	64	3.58769535265889E-024	7	0.0000967237046230831
"carotenoid biosynthesis"	"AraCyc"	64	1.01353856453981E-025	7	0.0000287078364238872
"Citrate cycle (TCA cycle)"	"KEGG"	64	0.000603967283737708	10	0.0729961432799343
"carotenid biosynthesis"	"LitPath"	64	3.53723592723047E-025	7	0.000102476492605928
"growth"	"TAIR-GO"	63	0.000000617449172752909	8	0.0323617946896542
"Sulfur metabolism"	"KEGG"	63	0.0000000975262785545415	9	0.00164033264884197
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	62	3.36842027063603E-020	8	0.0000617399155737499
"photorespiration"	"AraCyc"	62	0.000000000000120747893367307	12	0.00343791217060932
"TCA cycle variation VIII"	"AraCyc"	62	0.0133376599276444	11	0.13991287484049
"brassinosteroid biosynthesis"	"LitPath"	62	0.000000315374543304808	7	0.0242485383000693
"sterol and brassinosteroid biosynthesis"	"LitPath"	62	0.000000000000204150925433888	7	0.0020579218567972
"Nitrogen metabolism"	"KEGG"	61	0.0345587625825342	9	0.0331117181850249
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	61	0.00000000658650925246313	7	0.0176807925943347
"TCA cycle -- aerobic respiration"	"AraCyc"	60	0.00437336859770571	11	0.110002325389784
"chlorophyll biosynthesis"	"LitPath"	59	2.06746989337168E-022	6	0.00015217124321779
"Ascorbate and aldarate metabolism"	"KEGG"	58	0.00000219997692928937	9	0.00511518539363788
"Cysteine metabolism"	"KEGG"	57	0.0000113114850821834	9	0.00958299419451782
"fatty acid biosynthesis"	"TAIR-GO"	56	0.000000000119282753961706	7	0.00372273415421429
"energy"	"FunCat"	54	0	11	0
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	53	0.0400249344426273	8	0.15546114177369
"Valine, leucine and isoleucine degradation"	"KEGG"	53	0.00232375867547789	8	0.123147463112784
"Synthesis of membrane lipids in endomembrane system"	"AcylLipid"	53	0.00317076840406784	8	0.132971106548348
"lactose degradation IV"	"AraCyc"	51	0	12	0
"chlorophyll binding"	"TAIR-GO"	50	0.0000000000602366931027596	6	0.00627284002151304
"sterol biosynthesis"	"TAIR-GO"	50	0.000473622897234649	5	0.185525626590116
"acetyl-CoA assimilation"	"AraCyc"	50	0.00240124322145269	9	0.0425959566363396
"sterol biosynthesis"	"AraCyc"	50	0.0000873032207423594	5	0.124518315001521
"Methionine metabolism"	"KEGG"	50	0.000000265777425411815	5	0.106857160775757
"Synthesis of fatty acids in plastids"	"AcylLipid"	50	0.000634962571683101	8	0.0400782115497447
"Glycine, serine and threonine metabolism"	"KEGG"	49	0.042446931825157	9	0.0696131101673445
"cysteine biosynthesis I"	"AraCyc"	47	0.0268142955613302	10	0.0681257520532453
"leucine degradation I"	"AraCyc"	46	0.000050025989235484	6	0.114102205301109
"leucine degradation II"	"AraCyc"	46	2.36319743753394E-018	6	0.0017770474881933
"glycine biosynthesis I"	"AraCyc"	45	0.000557818272527562	9	0.21354733027688
"Alanine and aspartate metabolism"	"KEGG"	45	0.0319675399748983	6	0.261320994972978
"glyoxylate cycle"	"AraCyc"	44	0.000652902019304679	7	0.0366489838368404
"leucine biosynthesis"	"AraCyc"	44	2.85600704211776E-017	7	0.00302131857934594
"mixed acid fermentation"	"AraCyc"	44	0.0132409146543957	9	0.074121469214676
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	44	0.00852461789725763	7	0.086344167785019
"Reductive carboxylate cycle (CO2 fixation)"	"KEGG"	44	0.00000241321101462568	7	0.0120262700270409
"Protein folding and associated processing"	"KEGG"	43	0.00004270901007469	7	0.0588979718582061
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	43	0.00000178196082095422	5	0.0636976131729084
"ATP-dependent proteolysis"	"TAIR-GO"	42	3.47555971425216E-023	9	0.000000732066836991226
"formaldehyde assimilation I (serine pathway)"	"AraCyc"	42	0.0140270508522893	7	0.21306412470017
"formylTHF biosynthesis"	"AraCyc"	42	0.000000000483018388256187	7	0.00738813793355169
"unidimensional cell growth"	"TAIR-GO"	41	0.00000433653553953227	5	0.027667127671344
"degradation "	"FunCat"	41	0.000000914174515209712	8	0.0108139611430409
"Cyanoamino acid metabolism"	"KEGG"	41	0.0000177935861357697	7	0.0475418200292631
"phenylalanine degradation I"	"AraCyc"	40	0.003619936516728	8	0.0358621550987627
"photosystem I"	"TAIR-GO"	39	1.28719909949992E-020	5	0.000331864853881857
"Butanoate metabolism"	"KEGG"	39	0.0137785276341598	6	0.115015852708759
"Chloroplastic protein turnover"	"BioPath"	38	0.000000000000111746458453077	8	0.0000225412121811233
"Protein export"	"KEGG"	38	0.00860141816825817	5	0.364404270200832
"transported compounds (substrates)"	"FunCat"	37	0	6	0
"ascorbic acid biosynthesis"	"BioPath"	36	0.0156987121379474	5	0.156516951336787
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	36	0.0000000464755985449348	8	0.00867341962649444
"TCA cycle variation II"	"AraCyc"	36	0.000000489743213712713	7	0.00483867455162078
"aerobic respiration"	"FunCat"	36	0.0000170863518226449	6	0.00368019586832954
"respiration"	"FunCat"	36	0.0000170863518226449	6	0.00368019586832954
"calmodulin binding"	"TAIR-GO"	35	0.0000000781734871268162	4	0.09357217477066
"N-Glycan biosynthesis"	"KEGG"	35	0.000000544940691927375	7	0.00571682193121413
"Protein folding / chaperonins (chloroplast)"	"BioPath"	34	0.00000476274237781386	5	0.0258184404474283
"photorespiration"	"TAIR-GO"	34	0	5	0
"mannitol degradation"	"AraCyc"	34	0.000167535926206346	7	0.0585901321099558
"methionine degradation I"	"AraCyc"	34	0.00000000026897187745384	4	0.0193117079503221
"sorbitol degradation"	"AraCyc"	34	0.000408171139194532	7	0.0721137386501392
"galactose degradation I"	"AraCyc"	33	0	8	0
"Bile acid biosynthesis"	"KEGG"	33	0.000314596047483762	5	0.0398595916756427
"Chloroplastic protein import via envelope membrane"	"BioPath"	32	0.00116288881463192	7	0.011618110718869
"electron transport and membrane-associated energy conservation "	"FunCat"	32	6.85054462104898E-016	7	0.00000202250790759672
"Fluorene degradation"	"KEGG"	32	0.0022430065193805	5	0.0289317931567813
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	32	0.0236422787570523	5	0.0530814924792923
"photosystem II"	"TAIR-GO"	31	1.74641373463176E-018	4	0.000291676603352937
"threonine degradation"	"AraCyc"	31	0.000000702225313131298	9	0.0014622459098457
"protein degradation "	"FunCat"	31	0.00000280234481920258	7	0.00416525554526789
"stress response"	"FunCat"	31	0	4	0
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	31	0.00000030486115834577	4	0.0127155087868693
"light harvesting complex"	"BioPath"	30	0.0000000000484653148118927	4	0.000907391182740106
"brassinosteroid biosynthesis"	"TAIR-GO"	30	0.0189183585236322	3	0.197347143491013
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	30	2.20522715527145E-016	3	0.00149189155605327
"isoprenoid biosynthesis"	"TAIR-GO"	30	0.000000000170535156811339	3	0.00629275136685463
"steroid biosynthesis"	"TAIR-GO"	30	0.0189183585236322	3	0.197347143491013
"aspartate degradation II"	"AraCyc"	30	0.0051097651401177	5	0.0476240908661375
"isoleucine biosynthesis I"	"AraCyc"	30	0.000000737536158966066	5	0.0476240908661375
"valine biosynthesis"	"AraCyc"	30	0.000000737536158966066	5	0.0476240908661375
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	30	0.00147562208050751	3	0.180479323389612
"pentose-phosphate pathway "	"FunCat"	30	0.00872872652071134	5	0.0845526778114725
"Benzoate degradation via hydroxylation"	"KEGG"	30	0.0000271426465381787	3	0.0725795018128484
"mevalonate pathway, cytosol"	"LitPath"	30	0.000644169709005411	3	0.123115420598739
"ClpP protease complex "	"BioPath"	28	0.0000000000000206609937030151	7	0.00000740390121585672
"carotene biosynthesis"	"TAIR-GO"	28	0	3	0
"protein folding"	"TAIR-GO"	28	0	4	0
"glycine degradation I"	"AraCyc"	28	9.46252428289674E-015	6	0.000132239481522532
"plant / fungal specific systemic sensing and response "	"FunCat"	28	0.0402470576019273	3	0.320931592464018
"plant hormonal regulation"	"FunCat"	28	0.0402470576019273	3	0.320931592464018
"regulation of transcription"	"TAIR-GO"	27	0	3	0
"isoleucine degradation III"	"AraCyc"	27	0.0000525884931765186	4	0.044701617001757
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	27	0.000000189680768889508	7	0.00049709251199337
"serine biosynthesis"	"AraCyc"	27	0.000000000000139559216799222	7	0
"photosystem II type I  chlorophyll a /b binding protein"	"BioPath"	26	0.00000000000359965730087928	3	0.00100140746548418
"protein biosynthesis"	"TAIR-GO"	26	0	5	0
"homocysteine and cysteine interconversion"	"AraCyc"	26	0.0000069926738964828	4	0.0193117079503221
"channel / pore class transport"	"FunCat"	26	0.0000004059375187256	4	0.0629881231872435
"nucleotide metabolism"	"FunCat"	26	0	6	0
"flower development"	"TAIR-GO"	25	0.00000000538070739326224	3	0.00629275136685463
"cysteine biosynthesis II"	"AraCyc"	25	0.00575173090155868	7	0.0366489838368404
"Delta-pH pathway"	"BioPath"	24	0	3	0
"mRNA processing in chloroplast"	"BioPath"	24	0.0000867863242779233	5	0.01093324160612
"Translation (chloroplast)"	"BioPath"	24	0.000000145809441933255	5	0.000186303193897914
"chloroplastic endopeptidase Clp complex"	"TAIR-GO"	24	8.70837754438216E-015	6	0.000011078639212213
"pentose-phosphate shunt"	"TAIR-GO"	24	0.0103219279191081	4	0.0682240797324615
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	24	0.0000000810115011157854	3	0.0105908639953317
"C-compound and carbohydrate utilization "	"FunCat"	24	0	5	0
"transport routes "	"FunCat"	24	0.00593929391341226	5	0.0428215087338082
"Histidine metabolism"	"KEGG"	24	0.0373224222096182	5	0.0866045008116145
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	23	0.0000405850082169525	5	0.0163367648896297
"transcription"	"FunCat"	23	0.00000500632927001042	5	0.0117786997159406
"cellulose biosynthesis"	"TAIR-GO"	22	0.00136957420666703	4	0.04721106362049
"indoleacetic acid biosynthesis"	"TAIR-GO"	22	0.00000092836966227636	3	0.00629275136685463
"carbon monoxide dehydrogenase pathway"	"AraCyc"	22	0.0254348164179544	6	0.210836575191659
"glucose and glucose-1-phosphate degradation"	"AraCyc"	22	0.000340516732129634	3	0.182662400745738
"methionine biosynthesis II"	"AraCyc"	22	0.0388293529486524	3	0.182662400745738
"starch biosynthesis"	"AraCyc"	22	0	3	0
"proteasome regulatory particle, base subcomplex (sensu Eukaryota)"	"TAIR-GO"	21	0.0138379637175164	3	0.115362464559009
"folate biosynthesis"	"AraCyc"	21	0.00158293292997724	4	0.0835459041121776
"Cytochrome b6/f complex"	"BioPath"	20	0.0020676339816336	2	0.20612777546042
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	20	0.00267540330028905	2	0.073890243053117
"Toc apparatus"	"BioPath"	20	0.0150763649622665	4	0.0318883219055347
"methionine biosynthesis"	"TAIR-GO"	20	0.000000672603527910949	2	0.0259837779345945
"phenylpropanoid metabolism"	"TAIR-GO"	20	0.00483581813908856	2	0.0950934482990014
"methionine and S-adenosylmethionine synthesis"	"AraCyc"	20	0.00000165244490974293	2	0.0715541515189444
"phospholipid desaturation pathway"	"AraCyc"	20	0.000318367792023342	2	0.0410725077571381
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	20	0.000110541681208366	2	0.109249096231156
"lipid transport "	"FunCat"	20	0.000000000295532428890267	3	0.0217709807036725
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio"	"KEGG"	20	0.00186703109468132	2	0.183612846697407
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation"	"KEGG"	20	0.0000335306848308307	2	0.064433173794253
"Androgen and estrogen metabolism"	"KEGG"	20	0.000076294853419923	2	0.0989341124877779
"phytochromobilin biosynthesis"	"LitPath"	20	0.0114932220501166	2	0.11843100321367
"hypersensitive response"	"TAIR-GO"	19	0.0020848442356698	2	0.0950934482990014
"leucine catabolism"	"TAIR-GO"	19	0.0000000216158496216004	2	0.00761486315068859
"response to pathogenic bacteria"	"TAIR-GO"	19	0.0000286187417748366	2	0.0555203177862044
"methylglyoxal degradation"	"AraCyc"	19	0.00215046045963695	4	0.0835459041121776
"valine degradation II"	"AraCyc"	19	0.0306535414615579	4	0.165461920767571
"Sec (secretory) pathway"	"BioPath"	18	0.00000000000142887532711305	3	0.00100140746548418
"amino acid biosynthesis"	"TAIR-GO"	18	0.0000168072782257857	3	0.0533330652804249
"chloroplast organization and biogenesis"	"TAIR-GO"	18	0.0000000738367875962728	3	0.0159471872734074
"photosynthesis light harvesting"	"TAIR-GO"	18	0.0185615582727376	2	0.196489219403919
"primary cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	18	0.00000000106659310463893	3	0.00149189155605327
"signal transduction"	"TAIR-GO"	18	0	2	0
"xanthophyll cycle"	"AraCyc"	18	0	2	0
"accessory proteins of electron transport and membrane-associated energy conservation"	"FunCat"	18	0	3	0
"Alkaloid biosynthesis II"	"KEGG"	18	0.018623791209904	3	0.0320008708999023
"Tetracycline biosynthesis"	"KEGG"	18	0.0000128557044357483	2	0.0168114915648346
"photoinhibition"	"TAIR-GO"	17	0.000000248252615279228	2	0.00761486315068859
"glycosylglyceride desaturation pathway"	"AraCyc"	17	0.000087598669096065	2	0.0188898808735462
"ribose degradation"	"AraCyc"	17	0.000135437737856324	4	0.044701617001757
"electron / hydrogen transport "	"FunCat"	17	0.00000443680458786308	3	0.00600221370234679
"Other ion-coupled transporters"	"KEGG"	17	0.0312837903078576	3	0.129928150161925
"Early light-inducible proteins"	"BioPath"	16	0.0190256500379177	2	0.112631605486994
"magnesium chelatase complex"	"TAIR-GO"	16	0	2	0
"phosphorylation"	"TAIR-GO"	16	0	2	0
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	16	0.0000242490669613651	2	0.0259837779345945
"plastid organization and biogenesis"	"TAIR-GO"	16	0.000000820413610887041	3	0.00149189155605327
"PSII associated light-harvesting complex II"	"TAIR-GO"	16	0	2	0
"RNA processing"	"TAIR-GO"	16	0	3	0
"ascorbate biosynthesis"	"AraCyc"	16	0.00338557982574486	2	0.200571856687369
"chloroplast transport "	"FunCat"	16	0.0120745231638182	2	0.182543479345099
"fatty acid desaturation"	"TAIR-GO"	15	0.00000266074251370889	2	0.00761486315068859
"response to abiotic stimulus"	"TAIR-GO"	15	0	2	0
"response to water deprivation"	"TAIR-GO"	15	0	3	0
"superpathway of gluconate degradation"	"AraCyc"	15	0.00155687869427585	5	0.0476240908661375
"biosynthesis of secondary products derived from primary amino acids"	"FunCat"	15	0.00154833963903116	3	0.093926478364061
"aminoacyl-tRNA-synthetases"	"FunCat"	14	0.0198047396328748	5	0.0428215087338082
"biosynthesis of nonprotein amino acids"	"FunCat"	14	0.000000192937387205284	2	0.0121905147543063
"C-compound and carbohydrate glyoxylate cycle "	"FunCat"	14	0.0000000249544904753681	2	0.00343492690352602
"glyoxylate cycle"	"FunCat"	14	0.0000000249544904753681	2	0.00343492690352602
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	14	0	3	0
"one-carbon compound metabolism"	"TAIR-GO"	13	0.000280861420636052	2	0.0259837779345945
"cytoplasmic and nuclear protein degradation"	"FunCat"	13	0.0000264955423262762	2	0.0121905147543063
"detoxification"	"FunCat"	13	0	3	0
"transmembrane signal transduction"	"FunCat"	13	0.000000108541872868387	3	0.00227201677767259
"Plastoquinone biosynthesis"	"BioPath"	12	0	2	0
"psbP family of thylakoid proteins"	"BioPath"	12	0.00029324743957603	2	0.073890243053117
"Tic apparatus"	"BioPath"	12	0.0078018336419852	3	0.0382979894749242
"branched chain family amino acid biosynthesis"	"TAIR-GO"	12	0.000000011811868759083	2	0.00761486315068859
"glycine decarboxylation via glycine cleavage system"	"TAIR-GO"	12	0	2	0
"response to osmotic stress"	"TAIR-GO"	12	0.000729051508985562	2	0.0259837779345945
"thiamine biosynthesis"	"AraCyc"	12	0.00311179247488135	2	0.0715541515189444
"1,2-Dichloroethane degradation"	"KEGG"	12	0.00000253771652386771	2	0.0168114915648346
"Limonene and pinene degradation"	"KEGG"	12	0.000218557445329437	2	0.064433173794253
"response to oxidative stress"	"TAIR-GO"	11	0.00407604232715634	2	0.0555203177862044
"Glycosphingolipid metabolism"	"KEGG"	11	0.0346437115883327	2	0.139094057440503
"brassinosteroid biosynthesis"	"BioPath"	10	0.0313125794188119	1	0.083978499613686
"ERD1 protease (ClpC-like)"	"BioPath"	10	0	1	0
"Other cell wall metabolism related enzymes"	"BioPath"	10	0.000730817681702426	1	0.0317555684897642
"photosystem I subunit precursor"	"BioPath"	10	0.00989789923978117	1	0.218985281977445
"Plastocyanin"	"BioPath"	10	0.000730817681702426	1	0.0317555684897642
"Regulatory enzymes"	"BioPath"	10	0.0313125794188119	1	0.083978499613686
"Transcriptional regulators (chloroplast)"	"BioPath"	10	0.000730817681702426	1	0.0317555684897642
"biotin binding"	"TAIR-GO"	10	0.000668151144404764	1	0.0387863549051957
"carotenoid biosynthesis/TAS"	"TAIR-GO"	10	0	1	0
"cell communication"	"TAIR-GO"	10	0	1	0
"chlorophyll catabolism"	"TAIR-GO"	10	0.0292570436775884	1	0.10112933841421
"chloroplast ATP synthase complex"	"TAIR-GO"	10	0.000668151144404764	1	0.0387863549051957
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	10	0.0292570436775884	1	0.10112933841421
"cysteine biosynthesis"	"TAIR-GO"	10	0.0292570436775884	1	0.10112933841421
"etioplast organization and biogenesis"	"TAIR-GO"	10	0	1	0
"glutathione biosynthesis"	"TAIR-GO"	10	0.000668151144404764	1	0.0387863549051957
"glutathione metabolism"	"TAIR-GO"	10	0	1	0
"glycine catabolism"	"TAIR-GO"	10	0	1	0
"glyoxysome organization and biogenesis"	"TAIR-GO"	10	0	1	0
"methionine biosynthesis from L-homoserine via cystathione"	"TAIR-GO"	10	0	1	0
"methylation-dependent chromatin silencing"	"TAIR-GO"	10	0	1	0
"pectin biosynthesis"	"TAIR-GO"	10	0.000090698053150005	1	0.10112933841421
"phytochromobilin biosynthesis"	"TAIR-GO"	10	0.0292570436775884	1	0.10112933841421
"plastoquinone biosynthesis"	"TAIR-GO"	10	0.000668151144404764	1	0.0387863549051957
"positive regulation of transcription"	"TAIR-GO"	10	0.0225882065135776	1	0.10112933841421
"posttranscriptional gene silencing"	"TAIR-GO"	10	0	1	0
"protein complex assembly"	"TAIR-GO"	10	0	1	0
"response to cadmium ion"	"TAIR-GO"	10	0	1	0
"response to gravity"	"TAIR-GO"	10	0	1	0
"response to pathogenic fungi"	"TAIR-GO"	10	0.0126720320036767	1	0.10112933841421
"response to salicylic acid stimulus"	"TAIR-GO"	10	0	1	0
"RNA binding"	"TAIR-GO"	10	0	1	0
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	10	0	1	0
"xanthophyll cycle"	"TAIR-GO"	10	0	1	0
"xanthophyll metabolism"	"TAIR-GO"	10	0	1	0
"glutathione biosynthesis"	"AraCyc"	10	0.000563545781454336	1	0.0309601170786351
"plastoquinone biosynthesis"	"AraCyc"	10	0.0148886846239498	1	0.14511883756206
"proline biosynthesis I"	"AraCyc"	10	0.0256676504705501	3	0.0367403892341425
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	10	0.00379244232585227	1	0.214483057432008
"degradation of lipids, fatty acids and isoprenoids"	"FunCat"	10	0	1	0
"detoxification by modification"	"FunCat"	10	0.0000412211981249256	1	0.0615503746209651
"ionic homeostasis "	"FunCat"	10	0	1	0
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	10	0	1	0
"regulation of nucleotide metabolism"	"FunCat"	10	0	2	0
"C5-Branched dibasic acid metabolism"	"KEGG"	10	0	1	0
"chlorophyll a biosynthesis"	"LitPath"	10	0	1	0
"chlorophyll catabolism"	"LitPath"	10	0.0267086251998614	1	0.0874506843201815
"diterpene biosynthesis"	"LitPath"	10	0.000589054463965221	1	0.0331304495158158
"phytol biosynthesis"	"LitPath"	10	0	1	0
"Tyr biosynthesis"	"LitPath"	10	0	1	0
"acetate metabolism"	"TAIR-GO"	9	0	1	0
"carbohydrate biosynthesis"	"TAIR-GO"	9	0	1	0
"DNA methylation"	"TAIR-GO"	9	0	1	0
"glutamate metabolism"	"TAIR-GO"	9	0	1	0
"glyoxylate cycle"	"TAIR-GO"	9	0	1	0
"induced systemic resistance, jasmonic acid mediated signaling pathway"	"TAIR-GO"	9	0	1	0
"jasmonic acid and ethylene-dependent systemic resistance"	"TAIR-GO"	9	0.00106571750005383	1	0.0387863549051957
"jasmonic acid mediated signaling pathway"	"TAIR-GO"	9	0	1	0
"L-serine biosynthesis"	"TAIR-GO"	9	0.000291887560286367	1	0.0387863549051957
"methylglyoxal catabolism"	"TAIR-GO"	9	0.00106571750005383	1	0.0387863549051957
"negative regulation of signal transduction"	"TAIR-GO"	9	0	1	0
"negative regulation of transcription"	"TAIR-GO"	9	0	1	0
"nitrogen compound metabolism"	"TAIR-GO"	9	0.0197492282586318	1	0.10112933841421
"nuclear heterochromatin"	"TAIR-GO"	9	0	1	0
"nuclear ubiquitin ligase complex"	"TAIR-GO"	9	0	1	0
"phosphate transport"	"TAIR-GO"	9	0.0263612695856111	1	0.176274898893825
"phosphoinositide-mediated signaling"	"TAIR-GO"	9	0	1	0
"photomorphogenesis"	"TAIR-GO"	9	0.00106571750005383	1	0.10112933841421
"pollen germination"	"TAIR-GO"	9	0.0344137622808667	1	0.10112933841421
"pollen tube growth"	"TAIR-GO"	9	0.010264125134159	1	0.176274898893825
"protein amino acid adenylylation"	"TAIR-GO"	9	0	1	0
"red, far-red light phototransduction"	"TAIR-GO"	9	0	1	0
"RNA interference, production of siRNA"	"TAIR-GO"	9	0	1	0
"seed germination"	"TAIR-GO"	9	0.000000123556362001052	1	0
"sphingosine biosynthesis"	"TAIR-GO"	9	0	1	0
"sucrose biosynthesis"	"TAIR-GO"	9	0	1	0
"sulfur metabolism"	"TAIR-GO"	9	0	1	0
"alanine degradation III"	"AraCyc"	9	0.00158079010214959	1	0.082004359217803
"mannosyl-chito-dolichol biosynthesis"	"AraCyc"	9	0.000247690275030694	2	0.00543799600905117
"oxidation of fatty acids "	"FunCat"	9	0.000000231206770846901	1	0.0228067428093391
"biosynthesis of extracellular lipids"	"LitPath"	9	0	1	0
"chloroplast stroma protein import"	"TAIR-GO"	8	0.0000728910602184336	2	0.00761486315068859
"nonphotochemical quenching"	"TAIR-GO"	8	0.00486982180309212	1	0.0387863549051957
"photosystem I antenna complex"	"TAIR-GO"	8	0	1	0
"photosystem II antenna complex"	"TAIR-GO"	8	0.0113462799219634	1	0.10112933841421
"transcription factor binding"	"TAIR-GO"	8	0	1	0
"xanthophyll biosynthesis "	"TAIR-GO"	8	0	1	0
"accessory proteins of photosynthetic electron transport "	"FunCat"	8	0.000019043748431777	1	0.0228067428093391
"energy conversion and regeneration "	"FunCat"	8	0.000123722872088941	1	0.0615503746209651
"brassinosteroid mediated signaling"	"TAIR-GO"	7	0.00272823715898613	1	0.0387863549051957
"cell wall organization and biogenesis (sensu Magnoliophyta)"	"TAIR-GO"	7	0.0260011569883353	1	0.10112933841421
"detection of brassinosteroid stimulus"	"TAIR-GO"	7	0	1	0
"DNA-directed RNA polymerase II, holoenzyme"	"TAIR-GO"	7	0	1	0
"isopentenyl diphosphate biosynthesis, mevalonate-independent pathway"	"TAIR-GO"	7	0	1	0
"leaf morphogenesis"	"TAIR-GO"	7	0.0182517113865041	1	0.10112933841421
"multidimensional cell growth "	"TAIR-GO"	7	0	1	0
"photoreactive repair"	"TAIR-GO"	7	0.00272823715898613	1	0.0387863549051957
"photosystem II assembly"	"TAIR-GO"	7	0.0477389635759816	1	0.10112933841421
"photosystem II stabilization"	"TAIR-GO"	7	0.0123042049049877	1	0.0387863549051957
"protein amino acid glycosylation"	"TAIR-GO"	7	0	1	0
"protein amino acid N-linked glycosylation via asparagine"	"TAIR-GO"	7	0	1	0
"systemic acquired resistance, salicylic acid mediated signaling pathway"	"TAIR-GO"	7	0.0123042049049877	1	0.10112933841421
"rRNA synthesis "	"FunCat"	7	0.000463948220683266	1	0.0228067428093391