"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN THREE DATA SETS" "sum.of.scores" "sum.of.genes" "ORGAN DATA SET" "quantDE" 3.60306 "maxDE" 5.4498952 "ORGAN DATA SET" "glycolysis and gluconeogenesis" "FunCat" 20 0.000000000642287010922198 3 0.00141152811798967 "Lipid signaling" "AcylLipid" 17 0.0000000295201337516998 2 0.0499101663881048 "lipoxygenase pathway" "AraCyc" 17 4.38664791196737E-021 2 0.0000405282147682213 "jasmonic acid biosynthesis" "AraCyc" 17 1.36773528549361E-017 2 0.000146800160722818 "Phenylpropanoid pathway" "LitPath" 16 0.000000470230737664446 4 0.000798983275154588 "C-compound and carbohydrate metabolism" "FunCat" 15 0.0118347381371515 2 0.108050573437922 "Pyruvate metabolism" "KEGG" 14 0.0000000613014705381892 2 0.00342474209127581 "glyoxylate cycle" "AraCyc" 14 0.00000000000117612934799118 2 0.000312374958697375 "Glyoxylate and dicarboxylate metabolism" "KEGG" 14 0.00000000000013143648261459 2 0.000211900107923421 "TCA cycle variation VIII" "AraCyc" 14 0.00000000233473043494565 2 0.00293281161423432 "TCA cycle variation VII" "AraCyc" 14 0.000000277488625820013 2 0.0080220688060096 "growth" "TAIR-GO" 14 0.000000000326833795361039 2 0.00159834322358163 "Intermediary Carbon Metabolism" "BioPath" 14 0.00000571569665094394 2 0.0236200121802291 "lignin biosynthesis" "AraCyc" 12 0.000000211892884771582 2 0.00215021081446015 "suberin biosynthesis" "AraCyc" 12 0.0000000000879480517710357 2 0.000146800160722818 "Phenylalanine metabolism" "KEGG" 10 0.0000031343472026245 1 0.0540337323859335 "metabolism of the cysteine - aromatic group" "FunCat" 10 0.0000000000073147869391787 1 0.000826596802073965 "glyoxylate cycle" "FunCat" 10 1.65268818646502E-019 1 0.0000561073795585996 "salicylic acid biosynthesis" "AraCyc" 10 0.00000000000080603494913641 1 0.000511855472326291 "sterol biosynthesis" "AraCyc" 10 0.0000000817548880286791 1 0.00615870996126896 "amino acid metabolism" "FunCat" 10 0.00638552567791917 1 0.0760552504459934 "Tyrosine metabolism" "KEGG" 10 0.00000019987496606061 1 0.012701162606654 "sterol biosynthesis" "LitPath" 10 6.34876261183653E-015 1 0.000721259693093817 "Alkaloid biosynthesis I" "KEGG" 10 0.00000000170979136961747 1 0.00393912642243844 "Alkaloid biosynthesis II" "KEGG" 10 0.000000000000118427435640875 1 0.000494955727862517 "Nitrogen metabolism" "KEGG" 10 0.00000068660144597556 1 0.0082438581608715 "core phenylpropanoid metabolism" "BioPath" 10 0.0000000970348475502496 1 0.014051395032785 "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" 10 0.0000112228719026513 1 0.0266118993327048 "Phenylpropanoid Metabolism" "BioPath" 10 0.00612673231173744 1 0.156622327543179 "biosynthesis of phenylpropanoids" "FunCat" 10 1.53014433360084E-016 1 0.000398200077042811 "biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine" "FunCat" 10 1.53014433360084E-016 1 0.000398200077042811 "fatty acid alpha-oxidation" "TAIR-GO" 10 0 1 0 "sterol biosynthesis" "TAIR-GO" 10 0.000000782372839472647 1 0.0167918132060521 "phenylpropanoid pathway, initial reactions" "AraCyc" 10 0.000000000000323819166202004 1 0.000342494591954073 "triterpene, sterol, and brassinosteroid metabolism" "LitPath" 10 0.0000000693288070685107 1 0.0358460364186601 "cell death" "TAIR-GO" 10 0.000000000000155686820782135 1 0.000584769985055494 "sterol biosynthesis" "BioPath" 10 0.00000000345117252940956 1 0.00481579030110053 "IAA biosynthesis" "AraCyc" 9 0.00000000640161280514161 1 0.00220304603768837 "auxin biosynthesis" "TAIR-GO" 9 0.000000000000229908305163752 1 0.000584769985055494 "steroid biosynthesis" "TAIR-GO" 7 0.0000127547048701387 1 0.00612488652797354 "response to jasmonic acid stimulus" "TAIR-GO" 7 0.000000079814478825701 1 0.00200939468717241 "response to abscisic acid stimulus" "TAIR-GO" 7 0.00000153262376695806 1 0.00612488652797354 "response to wounding" "TAIR-GO" 7 0.000451394341073396 1 0.0201680843900238 "response to pathogenic bacteria" "TAIR-GO" 7 0.00000000573615321788534 1 0.000968657286017976 "defense response to pathogenic bacteria, incompatible interaction" "TAIR-GO" 7 0.00000000573615321788534 1 0.000968657286017976 "defense response" "TAIR-GO" 7 0.000247782846411785 1 0.0167918132060521 "membrane disassembly" "TAIR-GO" 7 0 1 0 "jasmonic acid biosynthesis" "TAIR-GO" 7 0.0000769632068748214 1 0.0152050364645065 "STRESS DATA SET" "quantDE" 1.21375 "maxDE" 3.458728 "STRESS DATA SET" "HORMONE DATA SET" "quantDE" 1.350483 "maxDE" 2.0555563 "HORMONE DATA SET" "steroid biosynthesis" "TAIR-GO" 33 1.40868124405839E-047 4 0.0000000041183039908523 "triterpene, sterol, and brassinosteroid metabolism" "LitPath" 26 1.04778028543392E-019 3 0.000359347393921206 "brassinosteroid biosynthesis" "LitPath" 23 2.72233131747069E-018 3 0.000043990661690064 "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" 20 4.5170442327223E-022 2 0.000050286564404714 "brassinosteroid biosynthesis" "TAIR-GO" 19 1.40868124405839E-047 2 0.0000000041183039908523 "growth" "TAIR-GO" 17 1.14926249286482E-015 2 0.000424241367546078 "brassinosteroid biosynthesis I" "AraCyc" 10 1.11308779126169E-020 1 0.000023839313989863 "unidimensional cell growth" "TAIR-GO" 10 0.000000000474068205565978 1 0.00303186297513729 "Protein prenylation" "BioPath" 10 1.52362747643998E-020 1 0.000035753945367649 "protein prenylation" "LitPath" 10 0.000000000868363023232147 1 0.00756580180313879 "secondary metabolism" "FunCat" 10 0.000000000000034608365894825 1 0.00108054436803106 "gamma-Hexachlorocyclohexane degradation" "KEGG" 10 4.40173178730882E-025 1 0.00000382349217672395 "Fluorene degradation" "KEGG" 10 2.6475498607623E-026 1 0.0000025633145541205 "Ascorbate and aldarate metabolism" "KEGG" 10 2.73949743139805E-022 1 0.0000128327550430404 "brassinosteroid biosynthesis II" "AraCyc" 10 8.48187222193562E-024 1 0.00000828102485963663 "Stilbene, coumarine and lignin biosynthesis" "KEGG" 10 1.43969936291015E-016 1 0.000814368423688406 "brassinosteroid biosynthesis" "BioPath" 10 3.66231388167469E-022 1 0.00000511800475879116 "leaf morphogenesis" "TAIR-GO" 7 0.000000000000370348072719682 1 0.000121059652634395 "MUTANT DATA SET" "quantDE" 1.49505 "maxDE" 3.756440536 "MUTANT DATA SET" "male gamete generation (sensu Magnoliophyta)" "TAIR-GO" 7 2.06916394884911E-017 1 0.0000233363123655411 "metabolism of acyl-lipids in mitochondria" "AcylLipid" 7 0 1 0