| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP94B2 (At3g01900) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| there are no pathways co-expressed in all data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) | CYP94B2 (At3g01900) | |||||||||||||||
| max. difference between log2-ratios: | 2.5 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.8 | |||||||||||||||
| Link to organ heatmap | ||||||||||||||||
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| there are no co-expressed pathways with r-value greater than 0.5 in this data set | ||||||||||||||||
| Pathways co-expressed in the Stress data set ( with more than 10 annotation points) | CYP94B2 (At3g01900) | |||||||||||||||
| max. difference between log2-ratios: | 3.3 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.0 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to stress heatmap | ||||||||||
| Biosynthesis of prenyl diphosphates | BioPath | 10 | 0.000 | 1 | 0.000 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria | BioPath | 10 | 0.000 | 1 | 0.001 | |||||||||||
| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points) | CYP94B2 (At3g01900) | |||||||||||||||
| max. difference between log2-ratios: | 1.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.6 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| Biosynthesis of Amino Acids and Derivatives | BioPath | 22 | 0.000 | 4 | 0.000 |
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| Methionin/SAM/ethylene metabolism from cysteine and aspartate | BioPath | 16 | 0.000 | 3 | 0.000 | |||||||||||
| secondary metabolism | FunCat | 14 | 0.000 | 3 | 0.000 | |||||||||||
| trans-zeatin biosynthesis | AraCyc | 12 | 0.000 | 2 | 0.000 | |||||||||||
| ethylene biosynthesis | TAIR-GO | 10 | 0.000 | 2 | 0.000 | |||||||||||
| gibberellic acid catabolism | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Diterpenoid biosynthesis | KEGG | 10 | 0.000 | 1 | 0.002 | |||||||||||
| Propanoate metabolism | KEGG | 10 | 0.000 | 2 | 0.000 | |||||||||||
| Gibberellin metabolism | LitPath | 10 | 0.000 | 1 | 0.001 | |||||||||||
| giberelin catabolism | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) | CYP94B2 (At3g01900) | |||||||||||||||
| max. difference between log2-ratios: | 1.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.4 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to mutants heatmap | ||||||||||
| Ribosome | KEGG | 20 | 0.000 | 4 | 0.014 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria | BioPath | 16 | 0.000 | 2 | 0.002 | |||||||||||
| Glutathione metabolism | KEGG | 12 | 0.000 | 2 | 0.002 | |||||||||||
| Biosynthesis of Amino Acids and Derivatives | BioPath | 10 | 0.003 | 1 | 0.170 | |||||||||||
| Biosynthesis of prenyl diphosphates | BioPath | 10 | 0.000 | 1 | 0.016 | |||||||||||
| Glutathione metabolism | BioPath | 10 | 0.000 | 1 | 0.037 | |||||||||||
| gibberellic acid biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.001 | |||||||||||
| gibberellic acid mediated signaling | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| glutathione biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| gibberellin biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| glutathione biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| mevalonate pathway | AraCyc | 10 | 0.000 | 1 | 0.001 | |||||||||||
| biosynthesis of derivatives of homoisopentenyl pyrophosphate | FunCat | 10 | 0.000 | 1 | 0.005 | |||||||||||
| biosynthesis of vitamins, cofactors, and prosthetic groups | FunCat | 10 | 0.000 | 1 | 0.004 | |||||||||||
| isoprenoid biosynthesis | FunCat | 10 | 0.000 | 1 | 0.068 | |||||||||||
| lipid, fatty acid and isoprenoid biosynthesis | FunCat | 10 | 0.000 | 1 | 0.053 | |||||||||||
| plant / fungal specific systemic sensing and response | FunCat | 10 | 0.000 | 1 | 0.008 | |||||||||||
| plant hormonal regulation | FunCat | 10 | 0.000 | 1 | 0.008 | |||||||||||
| protein synthesis | FunCat | 10 | 0.004 | 2 | 0.056 | |||||||||||
| Butanoate metabolism | KEGG | 10 | 0.000 | 1 | 0.009 | |||||||||||
| Diterpenoid biosynthesis | KEGG | 10 | 0.000 | 1 | 0.002 | |||||||||||
| Glutamate metabolism | KEGG | 10 | 0.000 | 1 | 0.026 | |||||||||||
| Synthesis and degradation of ketone bodies | KEGG | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Valine, leucine and isoleucine degradation | KEGG | 10 | 0.000 | 1 | 0.018 | |||||||||||
| diterpene biosynthesis | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Gibberellin metabolism | LitPath | 10 | 0.000 | 1 | 0.008 | |||||||||||
| IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis | LitPath | 10 | 0.000 | 1 | 0.012 | |||||||||||
| mevalonate pathway, cytosol | LitPath | 10 | 0.000 | 1 | 0.003 | |||||||||||
| page created by Vincent Sauveplane | 04/19/06 | |||||||||||||||