"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN THREE DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"jasmonic acid biosynthesis"	"TAIR-GO"	"180"	"26"	""	""
"jasmonic acid biosynthesis"	"TAIR-GO"	"180"	"26"	""	""
"Lipid signaling"	"AcylLipid"	"116"	"21"	""	""
"response to wounding"	"TAIR-GO"	"96"	"13"	""	""
"lipoxygenase pathway"	"AraCyc"	"60"	"10"	""	""
"ORGAN DATA SET"	"quantDE"	"3.965597"	"maxDE"	"6.3903162"	"ORGAN DATA SET"
"STRESS DATA SET"	"quantDE"	"3.496584"	"maxDE"	"9.618389"	"STRESS DATA SET"
"Lipid signaling"	"AcylLipid"	"24"	"1.82827852628048e-14"	"4"	"0.00438907746194558"
"jasmonic acid biosynthesis"	"TAIR-GO"	"22"	"6.29595432973494e-30"	"3"	"1.98640220893645e-06"
"jasmonic acid biosynthesis"	"AraCyc"	"22"	"3.9175861504331e-37"	"3"	"1.40030143040597e-07"
"response to wounding"	"TAIR-GO"	"16"	"7.7248417466037e-18"	"2"	"0.000190420728274974"
"lipoxygenase pathway"	"AraCyc"	"12"	"4.57227507304734e-20"	"2"	"4.49577689151516e-06"
"gibberellic acid catabolism"	"TAIR-GO"	"9"	"1.94676866915979e-14"	"1"	"0.000282996388864412"
"HORMONE DATA SET"	"quantDE"	"3.24218"	"maxDE"	"11.0995808"	"HORMONE DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	"86"	"1.04806128973806e-24"	"12"	"1.24089683313520e-05"
"tryptophan biosynthesis"	"TAIR-GO"	"68"	"4.59812337607816e-65"	"9"	"7.6973720427288e-12"
"Shikimate pathway"	"LitPath"	"68"	"6.96542555000303e-26"	"9"	"2.28942068313046e-05"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"62"	"7.26650650395604e-37"	"8"	"5.63671731719391e-07"
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"62"	"1.51660867595535e-10"	"7"	"0.0125209289277497"
"tryptophan biosynthesis"	"AraCyc"	"60"	"3.10274726211872e-59"	"9"	"1.85319680384176e-11"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"58"	"8.01060106455207e-49"	"7"	"5.34995217799485e-09"
"Trp biosyntesis"	"LitPath"	"58"	"5.15414236991047e-39"	"8"	"3.59374424419012e-08"
"Glutathione metabolism"	"BioPath"	"56"	"2.82584310376910e-25"	"6"	"0.000276453865449358"
"Glucosinolate Metabolism"	"LitPath"	"50"	"2.24516762088886e-20"	"5"	"0.000327174466536957"
"response to pathogenic bacteria"	"TAIR-GO"	"48"	"0"	"7"	"0"
"response to wounding"	"TAIR-GO"	"46"	"2.31477415487818e-28"	"6"	"2.61775137070537e-06"
"jasmonic acid biosynthesis"	"TAIR-GO"	"42"	"2.21255914717112e-29"	"6"	"8.3347438468079e-07"
"jasmonic acid biosynthesis"	"AraCyc"	"42"	"3.85324767715053e-37"	"6"	"2.21442303892429e-08"
"Lipid signaling"	"AcylLipid"	"42"	"2.29755803353371e-15"	"6"	"0.0069408068207421"
"sulfate assimilation III"	"AraCyc"	"36"	"6.59774194394159e-19"	"4"	"0.00038667371850407"
"lipoxygenase pathway"	"AraCyc"	"32"	"2.05572704594201e-31"	"5"	"3.85375946068563e-08"
"Purine metabolism"	"KEGG"	"32"	"1.87330779550114e-17"	"4"	"0.000282951438589658"
"Selenoamino acid metabolism"	"KEGG"	"30"	"5.65705803501538e-21"	"3"	"0.000195532371887527"
"Sulfur metabolism"	"KEGG"	"30"	"2.36457092130847e-23"	"3"	"5.52912606546305e-05"
"alanine biosynthesis II"	"AraCyc"	"26"	"9.51666131025532e-19"	"3"	"0.00124807367164746"
"dissimilatory sulfate reduction"	"AraCyc"	"26"	"1.07933744799009e-26"	"3"	"4.51347715252998e-06"
"phenylalanine biosynthesis II"	"AraCyc"	"26"	"4.8767731120865e-21"	"3"	"0.000754535090864144"
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	"20"	"0.0109472889926438"	"2"	"0.119192160754898"
"indoleacetic acid biosynthesis"	"TAIR-GO"	"20"	"6.827838732601e-20"	"2"	"0.000287046850505178"
"sulfate assimilation"	"TAIR-GO"	"20"	"1.00554981908066e-14"	"2"	"0.00150138683401657"
"glucosinolate biosynthesis from phenylalanine"	"AraCyc"	"20"	"3.11516857948311e-23"	"2"	"2.82957494389539e-05"
"glucosinolate biosynthesis from tryptophan"	"AraCyc"	"20"	"4.32415096041857e-27"	"2"	"7.17508994352881e-06"
"nitrogen and sulfur utilization "	"FunCat"	"20"	"2.05829016640779e-26"	"2"	"4.20740894353730e-05"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"20"	"5.1308522924983e-16"	"2"	"0.000573806053499231"
"phenylalanine degradation I"	"AraCyc"	"18"	"3.03015771137012e-09"	"3"	"0.00168099073295897"
"defense response"	"TAIR-GO"	"17"	"1.72931465460736e-05"	"3"	"0.00299148415993968"
"response to jasmonic acid stimulus"	"TAIR-GO"	"16"	"3.55838954666783e-12"	"2"	"0.0009599391206821"
"tyrosine degradation"	"AraCyc"	"16"	"1.88094751167344e-15"	"2"	"0.000779730910868619"
"Alkaloid biosynthesis I"	"KEGG"	"16"	"1.66320912312255e-10"	"2"	"0.00125521419560460"
"Novobiocin biosynthesis"	"KEGG"	"16"	"9.52038876265865e-15"	"2"	"0.000248133032989201"
"Phenylalanine metabolism"	"KEGG"	"16"	"8.35751196367687e-06"	"2"	"0.0553116001426973"
"Tyrosine metabolism"	"KEGG"	"16"	"1.78048128775402e-07"	"2"	"0.00711084237224633"
"Flavonoid and anthocyanin metabolism"	"BioPath"	"14"	"0.000253355367369055"	"3"	"0.0201082867469351"
"lignin biosynthesis"	"AraCyc"	"14"	"0.00239933902240425"	"3"	"0.0101211307835014"
"amino acid metabolism"	"FunCat"	"14"	"0.000286916174935827"	"2"	"0.0302669790126775"
"flavonoid biosynthesis"	"AraCyc"	"12"	"2.02255587897189e-05"	"2"	"0.0149729291102164"
"nucleotide metabolism"	"FunCat"	"12"	"0"	"2"	"0"
"sterol biosynthesis"	"BioPath"	"10"	"0.0204688969891290"	"1"	"0.0879289522932454"
"anthranilate synthase complex"	"TAIR-GO"	"10"	"1.31833028773600e-11"	"1"	"0.00098197904869027"
"aromatic amino acid family biosynthesis"	"TAIR-GO"	"10"	"0.00185942392454382"	"1"	"0.0699999583922555"
"aromatic amino acid family biosynthesis, anthranilate pathway"	"TAIR-GO"	"10"	"0"	"1"	"0"
"aromatic amino acid family biosynthesis, shikimate pathway"	"TAIR-GO"	"10"	"0.000342965045466272"	"1"	"0.0528524416473494"
"chlorophyll catabolism"	"TAIR-GO"	"10"	"3.10116684485399e-09"	"1"	"0.00288584663824683"
"chloroplast envelope"	"TAIR-GO"	"10"	"0"	"1"	"0"
"galactolipid biosynthesis"	"TAIR-GO"	"10"	"1.11136481568805e-06"	"1"	"0.00923234465170401"
"glucosinolate biosynthesis"	"TAIR-GO"	"10"	"0.000118906276799012"	"1"	"0.024314383822509"
"glycolipid biosynthesis"	"TAIR-GO"	"10"	"5.2738184255753e-08"	"1"	"0.00565422553122448"
"indole glucosinolate biosynthesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"lipid biosynthesis"	"TAIR-GO"	"10"	"1.11136481568805e-06"	"1"	"0.00923234465170401"
"response to biotic stimulus"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to red light"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to stress"	"TAIR-GO"	"10"	"7.11209576251112e-08"	"1"	"0.00565422553122448"
"shade avoidance"	"TAIR-GO"	"10"	"0"	"1"	"0"
"sterol biosynthesis"	"TAIR-GO"	"10"	"0.0291862735294412"	"1"	"0.129699246254584"
"sulfate reduction"	"TAIR-GO"	"10"	"1.31833028773600e-11"	"1"	"0.00098197904869027"
"sulfate reduction, APS pathway"	"TAIR-GO"	"10"	"0"	"1"	"0"
"tryptophan catabolism"	"TAIR-GO"	"10"	"1.31833028773600e-11"	"1"	"0.00098197904869027"
"cysteine biosynthesis I"	"AraCyc"	"10"	"0.00917079185466125"	"1"	"0.176246800466954"
"glycosylglyceride biosynthesis"	"AraCyc"	"10"	"1.38178990154239e-06"	"1"	"0.00742421575094063"
"histidine biosynthesis"	"AraCyc"	"10"	"1.14965031084169e-05"	"1"	"0.0378727495616143"
"histidine biosynthesis I"	"AraCyc"	"10"	"3.74505462126889e-06"	"1"	"0.0335566185996374"
"IAA biosynthesis"	"AraCyc"	"10"	"3.05561926176323e-05"	"1"	"0.0219034416389065"
"IAA biosynthesis I"	"AraCyc"	"10"	"1.01473856618767e-06"	"1"	"0.0124086425727844"
"sterol biosynthesis"	"AraCyc"	"10"	"0.00243229800666798"	"1"	"0.0570439329911803"
"tyrosine biosynthesis I"	"AraCyc"	"10"	"5.14445258783032e-08"	"1"	"0.0124086425727844"
"biogenesis of chloroplast"	"FunCat"	"10"	"0.000271770747559768"	"1"	"0.0623844608142481"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"10"	"4.8102158876199e-06"	"1"	"0.0302928932532187"
"Ascorbate and aldarate metabolism"	"KEGG"	"10"	"0.000109600823571035"	"1"	"0.0253758235574957"
"Fatty acid metabolism"	"KEGG"	"10"	"0.00254110407715798"	"1"	"0.0448566186245196"
"Fluorene degradation"	"KEGG"	"10"	"1.06365458186759e-06"	"1"	"0.00945817228140386"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"10"	"0.0298884835675584"	"1"	"0.261091236189996"
"Tryptophan metabolism"	"KEGG"	"10"	"4.65694645178663e-05"	"1"	"0.0448566186245196"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"10"	"0.00262811195469571"	"1"	"0.0591459754036076"
"chlorophyll catabolism"	"LitPath"	"10"	"1.1554961566022e-06"	"1"	"0.00883754462651147"
"oxylipin pathway"	"LitPath"	"10"	"6.36214676819025e-09"	"1"	"0.00305411828083117"
"Phe/Tyr biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"Tyr biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"Glutathione metabolism"	"KEGG"	"9"	"0.0069541096123048"	"1"	"0.0655043626224597"
"hemicellulose biosynthesis"	"BioPath"	"8"	"0.00268044103678653"	"1"	"0.0366407648958448"
"biogenesis of cell wall"	"FunCat"	"8"	"0.000395142750081473"	"1"	"0.0679047297642434"
"salicylic acid biosynthesis"	"TAIR-GO"	"7"	"4.48537081877807e-08"	"1"	"0.00098197904869027"
"transport "	"FunCat"	"7"	"5.60233140694675e-13"	"1"	"0.000129284030762596"
"transport ATPases"	"FunCat"	"7"	"4.04144972334502e-05"	"1"	"0.0190013921448736"
"transport facilitation"	"FunCat"	"7"	"0"	"1"	"0.000129284030762596"
"MUTANT DATA SET"	"quantDE"	"1.817516"	"maxDE"	"10.336627171"	"MUTANT DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	"74"	"4.99284355450026e-22"	"10"	"0.000207140738424154"
"Shikimate pathway"	"LitPath"	"58"	"1.44124962057948e-25"	"8"	"1.04311851491449e-05"
"tryptophan biosynthesis"	"TAIR-GO"	"54"	"6.40570049323775e-54"	"7"	"1.71666033624225e-09"
"tryptophan biosynthesis"	"AraCyc"	"54"	"2.20107187366178e-61"	"7"	"6.1843020753843e-10"
"Trp biosyntesis"	"LitPath"	"54"	"7.03710172956394e-42"	"7"	"5.51365675614608e-08"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"52"	"6.42366079214313e-31"	"7"	"4.75144742217836e-06"
"Lipid signaling"	"AcylLipid"	"50"	"2.72841523068789e-12"	"11"	"0.000734989089799466"
"response to pathogenic bacteria"	"TAIR-GO"	"44"	"0"	"6"	"0"
"Phenylpropanoid pathway"	"LitPath"	"40"	"9.38496992030198e-07"	"6"	"0.0343798654863695"
"response to wounding"	"TAIR-GO"	"34"	"4.73248934320842e-22"	"5"	"9.75931755353235e-06"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"32"	"6.80463738603004e-20"	"4"	"0.000921620248592247"
"Benzoate degradation via CoA ligation"	"KEGG"	"29"	"4.96506608320887e-14"	"10"	"3.4214343481023e-07"
"Inositol phosphate metabolism"	"KEGG"	"29"	"6.39258910809435e-13"	"10"	"8.31962315337491e-07"
"Nicotinate and nicotinamide metabolism"	"KEGG"	"29"	"1.12885497460434e-15"	"10"	"1.44862223039595e-07"
"lignin biosynthesis"	"AraCyc"	"28"	"2.24230385775456e-16"	"4"	"0.00022776629282929"
"jasmonic acid biosynthesis"	"TAIR-GO"	"26"	"3.11042025882435e-17"	"4"	"7.0432769565541e-05"
"jasmonic acid biosynthesis"	"AraCyc"	"26"	"8.40346797811907e-23"	"4"	"2.32141832452692e-06"
"core phenylpropanoid metabolism"	"BioPath"	"22"	"9.57717442603343e-08"	"3"	"0.0087872928937082"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"20"	"6.45310872127686e-07"	"2"	"0.0219235906655498"
"biosynthesis of proto- and siroheme"	"AraCyc"	"20"	"4.09616750213336e-11"	"2"	"0.0156774631068871"
"biogenesis of chloroplast"	"FunCat"	"20"	"5.6030890898502e-10"	"2"	"0.0277702101301345"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"20"	"6.98884536702764e-12"	"2"	"0.0119572048788356"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"20"	"0.0196445253298595"	"2"	"0.149693528902967"
"gibberellic acid catabolism"	"TAIR-GO"	"19"	"2.28430614962391e-20"	"2"	"0.000141260037868172"
"Glycerolipid metabolism"	"KEGG"	"18"	"1.01077987227161e-09"	"2"	"0.0206604869216514"
"defense response"	"TAIR-GO"	"17"	"9.6205064288284e-08"	"3"	"0.00123799748877473"
"lipoxygenase pathway"	"AraCyc"	"16"	"1.7240001329526e-14"	"3"	"1.17277860623184e-05"
"intracellular signalling"	"FunCat"	"16"	"3.86924567712773e-11"	"4"	"0.000268495870225876"
"Glycan Biosynthesis and Metabolism"	"KEGG"	"16"	"6.61241743127522e-06"	"5"	"0.000824508665048475"
"Purine metabolism"	"KEGG"	"16"	"8.93662281832464e-06"	"2"	"0.0922524254888079"
"nucleotide metabolism"	"TAIR-GO"	"15"	"2.55048212938943e-22"	"2"	"1.46365351156674e-05"
"de novo biosynthesis of purine nucleotides I"	"AraCyc"	"15"	"8.52352987390447e-05"	"2"	"0.103114119532390"
"Leaf Glycerolipid Biosynthesis in cytosol / ER"	"BioPath"	"14"	"1.96950902471538e-05"	"2"	"0.0169566504674327"
"triacylglycerol degradation"	"AraCyc"	"14"	"2.64374409348881e-09"	"3"	"0.00467763402867805"
"secondary metabolism"	"FunCat"	"14"	"5.71276370573518e-08"	"2"	"0.0265999103926433"
"cellulose biosynthesis"	"BioPath"	"12"	"0.00374812121122183"	"2"	"0.0488961354886891"
"flavonoid biosynthesis"	"AraCyc"	"12"	"1.55886000568958e-07"	"2"	"0.00488802881846837"
"phospholipid biosynthesis II"	"AraCyc"	"12"	"1.28354636260684e-07"	"2"	"0.00269423783115688"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"10"	"0.00360731746753017"	"1"	"0.104901244297824"
"aging"	"TAIR-GO"	"10"	"2.10685134122766e-07"	"1"	"0.0155303123896896"
"anthranilate synthase complex"	"TAIR-GO"	"10"	"2.50557256866217e-13"	"1"	"0.000610686071528164"
"growth"	"TAIR-GO"	"10"	"0.00441806816962377"	"2"	"0.0204665795576847"
"lignin biosynthesis"	"TAIR-GO"	"10"	"8.47191042354503e-06"	"1"	"0.0196517043530754"
"lipid metabolism"	"TAIR-GO"	"10"	"6.5269851914358e-11"	"1"	"0.00180278514435316"
"methionine biosynthesis"	"TAIR-GO"	"10"	"6.28412092006588e-10"	"1"	"0.00354805467979771"
"phenylpropanoid metabolism"	"TAIR-GO"	"10"	"1.75906683513012e-07"	"1"	"0.00859009915028024"
"phospholipid metabolism"	"TAIR-GO"	"10"	"2.50557256866217e-13"	"1"	"0.000610686071528164"
"porphyrin biosynthesis"	"TAIR-GO"	"10"	"1.31921696622934e-05"	"1"	"0.0399591060247198"
"sulfate assimilation"	"TAIR-GO"	"10"	"7.89752886307702e-07"	"1"	"0.0155303123896896"
"chlorophyll biosynthesis"	"AraCyc"	"10"	"0.00537509527638162"	"1"	"0.146408167965040"
"dissimilatory sulfate reduction"	"AraCyc"	"10"	"6.00261100466524e-09"	"1"	"0.00335059670735618"
"methionine biosynthesis II"	"AraCyc"	"10"	"9.45779287530795e-08"	"1"	"0.0118382183762812"
"sulfate assimilation III"	"AraCyc"	"10"	"0.00189360270857200"	"1"	"0.0679696088030326"
"triacylglycerol biosynthesis"	"AraCyc"	"10"	"8.28355984458719e-10"	"1"	"0.00241337002051605"
"aerobic respiration"	"FunCat"	"10"	"1.61244656793665e-08"	"1"	"0.0111035630510637"
"energy"	"FunCat"	"10"	"3.32638985123385e-18"	"2"	"1.18786948790593e-06"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"2"	"0"
"nitrogen and sulfur utilization "	"FunCat"	"10"	"8.2573665814442e-10"	"1"	"0.00597720579443091"
"respiration"	"FunCat"	"10"	"1.61244656793665e-08"	"1"	"0.0111035630510637"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"2.89542698771966e-06"	"1"	"0.0187256147350319"
"Methionine metabolism"	"KEGG"	"10"	"6.35626901603411e-06"	"1"	"0.0491648030627225"
"Phosphatidylinositol signaling system"	"KEGG"	"10"	"0.000108059399736361"	"1"	"0.123867568360788"
"Selenoamino acid metabolism"	"KEGG"	"10"	"0.000409205504743056"	"1"	"0.100468189977483"
"Signal Transduction"	"KEGG"	"10"	"0.000152881677074598"	"1"	"0.129910335544357"
"Sulfur metabolism"	"KEGG"	"10"	"8.78951354231209e-05"	"1"	"0.058423017310461"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"10"	"0.0448298258586987"	"1"	"0.167262870267281"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"10"	"0.00387785530180697"	"1"	"0.109906334575223"
"giberelin catabolism"	"LitPath"	"10"	"2.49317429655045e-10"	"1"	"0.00164218593194052"
"phytochromobilin biosynthesis"	"LitPath"	"10"	"0.000172914365057455"	"1"	"0.0303091983377888"
"N-terminal protein myristoylation"	"TAIR-GO"	"9"	"4.55617904086931e-05"	"1"	"0.0290835726493639"
"IAA conjugate biosynthesis II"	"AraCyc"	"9"	"0"	"1"	"0"
"ascorbic acid biosynthesis"	"BioPath"	"8"	"0.00211877713394304"	"2"	"0.00624026664833163"
"hemicellulose biosynthesis"	"BioPath"	"8"	"0.000829342008355609"	"1"	"0.0340330193037966"
"isoprenoid biosynthesis "	"FunCat"	"8"	"0.0100606650237016"	"2"	"0.0277702101301345"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"8"	"0.00433718791200022"	"2"	"0.0191755422004245"
"Fructose and mannose metabolism"	"KEGG"	"8"	"0.0220842649377472"	"1"	"0.199988538527689"
"Ion channels"	"KEGG"	"8"	"0.000384639637730316"	"4"	"0.00167955325168029"
"Ligand-Receptor Interaction"	"KEGG"	"8"	"0.000472813293817457"	"4"	"0.00201231871461190"
"response to auxin stimulus"	"TAIR-GO"	"7"	"0.000121706485169931"	"1"	"0.0196517043530754"
"salicylic acid biosynthesis"	"TAIR-GO"	"7"	"2.59673070028795e-09"	"1"	"0.000610686071528164"