"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN ALL DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"carotenoid biosynthesis"	"AraCyc"	"100"	"11"	""	""
"ORGAN DATA SET"	"quantDE"	"3.494663"	"maxDE"	"4.6508825"	"ORGAN DATA SET"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"60"	"4.19547448216784e-30"	"8"	"1.83484711316794e-06"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"39"	"1.35800059848731e-24"	"6"	"4.19942257538591e-06"
"Carotenoid biosynthesis"	"BioPath"	"28"	"9.89611660156888e-30"	"3"	"1.22532561355636e-05"
"carotenoid biosynthesis"	"AraCyc"	"28"	"4.50748325689144e-31"	"3"	"1.68079708841096e-05"
"carotenid biosynthesis"	"LitPath"	"28"	"3.53125553507298e-20"	"3"	"0.000467078451946911"
"Biosynthesis of prenyl diphosphates"	"BioPath"	"20"	"5.81146956056244e-08"	"3"	"0.00355357035390461"
"Folding, Sorting and Degradation"	"KEGG"	"19"	"3.69925153060645e-08"	"2"	"0.0652748591175048"
"Glutathione metabolism"	"KEGG"	"19"	"2.80894809073821e-14"	"2"	"0.00553896556276822"
"biogenesis of chloroplast"	"FunCat"	"18"	"7.69928477891112e-09"	"3"	"0.00397411546781343"
"C-compound and carbohydrate metabolism"	"FunCat"	"18"	"0.0374156861851659"	"5"	"0.0616442581802336"
"degradation "	"FunCat"	"17"	"6.59175256488107e-17"	"3"	"0.000149166200501049"
"protein degradation "	"FunCat"	"17"	"9.0931974591606e-20"	"3"	"4.08245999437539e-05"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"16"	"2.09057803702347e-05"	"2"	"0.0455900514149934"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"16"	"2.71586962539858e-10"	"2"	"0.00591909392389898"
"Shikimate pathway"	"LitPath"	"16"	"0.0172877908160661"	"2"	"0.192670067585079"
"Biosynthesis of steroids"	"KEGG"	"14"	"4.80683926993788e-07"	"2"	"0.00715211633945647"
"amino acid metabolism"	"FunCat"	"12"	"0.0143554999604294"	"2"	"0.100347517927026"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"10"	"0.00439890364834233"	"1"	"0.083628500085501"
"Delta-pH pathway"	"BioPath"	"10"	"2.97279581050332e-14"	"1"	"0.000626505358269512"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"10"	"5.77027925091463e-07"	"1"	"0.0148418037632467"
"aromatic amino acid family biosynthesis"	"TAIR-GO"	"10"	"2.89070803298287e-07"	"1"	"0.0149778418190421"
"aromatic amino acid family biosynthesis, shikimate pathway"	"TAIR-GO"	"10"	"3.57094688879358e-08"	"1"	"0.0110486763249923"
"carotene metabolism"	"TAIR-GO"	"10"	"3.29358917969969e-16"	"1"	"0.000182271097879579"
"chlorophyll catabolism"	"TAIR-GO"	"10"	"9.51870823082303e-14"	"1"	"0.000542165891857006"
"hypersensitive response"	"TAIR-GO"	"10"	"8.11745031402446e-11"	"1"	"0.00264239084042025"
"lipoic acid metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"photosystem I"	"TAIR-GO"	"10"	"3.18331302960967e-11"	"1"	"0.00366799367835416"
"photosystem II"	"TAIR-GO"	"10"	"9.75280926192894e-13"	"1"	"0.00177666242692962"
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	"10"	"1.45807792665819e-13"	"1"	"0.00107512234059143"
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xanthophyll cycle"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xanthophyll metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"phenylalanine degradation I"	"AraCyc"	"10"	"5.63569349006431e-06"	"2"	"0.0111670684836018"
"photorespiration"	"AraCyc"	"10"	"2.90925846917379e-06"	"4"	"0.000268745291674244"
"TCA cycle -- aerobic respiration"	"AraCyc"	"10"	"0.000448992811187086"	"2"	"0.0483347784392568"
"TCA cycle variation IV"	"AraCyc"	"10"	"0.000370391092893505"	"2"	"0.0433506746951039"
"TCA cycle variation VII"	"AraCyc"	"10"	"0.0136547788495008"	"2"	"0.123375681093889"
"TCA cycle variation VIII"	"AraCyc"	"10"	"0.000917052144874373"	"2"	"0.0535887370927172"
"xanthophyll cycle"	"AraCyc"	"10"	"1.57943725328012e-16"	"1"	"0.000303010227818522"
"Carbon fixation"	"KEGG"	"10"	"0.000299662269493067"	"2"	"0.0183883152905259"
"Protein export"	"KEGG"	"10"	"2.88648236585378e-08"	"1"	"0.0259430588003636"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"10"	"1.99140352892886e-11"	"1"	"0.00641327878430538"
"abscisic acid biosynthesis"	"LitPath"	"10"	"1.19714274673144e-06"	"2"	"0.00246354831728013"
"chlorophyll catabolism"	"LitPath"	"10"	"3.30615565128435e-09"	"1"	"0.00413568958323511"
"chorismate biosynthesis"	"LitPath"	"10"	"0.000548481787292295"	"1"	"0.0967413208900772"
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"10"	"0.0252394455270103"	"2"	"0.036857107793616"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"10"	"2.40082186140204e-05"	"2"	"0.00360131207328339"
"polyprenyl diphosphate biosynthesis"	"LitPath"	"10"	"5.64698465818493e-08"	"1"	"0.0342735266622046"
"Protein folding and associated processing"	"KEGG"	"9"	"1.38246288565702e-07"	"1"	"0.0211081165014555"
"Chloroplastic protein turnover"	"BioPath"	"8"	"4.36384864589179e-07"	"2"	"0.000590558615716768"
"ClpP protease complex "	"BioPath"	"8"	"3.8845718556461e-09"	"2"	"0.000232504058273267"
"ATP-dependent proteolysis"	"TAIR-GO"	"8"	"2.02559355834056e-08"	"2"	"0.000356150581717203"
"carotene biosynthesis"	"TAIR-GO"	"8"	"7.22441243673412e-11"	"1"	"0.000542165891857006"
"response to ethylene stimulus"	"TAIR-GO"	"8"	"2.90567873259609e-08"	"2"	"0.000764283421103395"
"glycine biosynthesis I"	"AraCyc"	"8"	"0.000290507276796551"	"3"	"0.00638671516341175"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"8"	"2.04788496981437e-06"	"3"	"0.000499297716729858"
"Methane metabolism"	"KEGG"	"8"	"0.000106406251083311"	"2"	"0.0326821477169495"
"STRESS DATA SET"	"quantDE"	"1.478466"	"maxDE"	"3.699538"	"STRESS DATA SET"
"transport "	"FunCat"	"19"	"0"	"2"	"1.11164256889593e-07"
"Transcription (chloroplast)"	"BioPath"	"18"	"8.5254916230127e-27"	"2"	"6.21973607768164e-06"
"transcription initiation"	"TAIR-GO"	"18"	"2.36569270393022e-27"	"2"	"7.22879748026484e-06"
"Folding, Sorting and Degradation"	"KEGG"	"17"	"6.95831634359928e-14"	"3"	"0.000153458482450651"
"Chloroplastic protein import via envelope membrane"	"BioPath"	"13"	"7.88364007751275e-15"	"2"	"0.000164740642236435"
"Chloroplastic protein turnover"	"BioPath"	"10"	"4.90498913821301e-13"	"1"	"0.00217500448236470"
"FtsH protease (many homologues / subcellular localization ambiguous)"	"BioPath"	"10"	"0"	"1"	"0"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"10"	"2.09009716121907e-12"	"1"	"0.000704349630120598"
"cytochrome b6f complex"	"TAIR-GO"	"10"	"1.33820041838325e-15"	"1"	"0.000423195781294186"
"cytochrome b6f complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"photosynthesis"	"TAIR-GO"	"10"	"1.09768854282998e-09"	"1"	"0.00513538510547807"
"photosynthesis, dark reaction"	"TAIR-GO"	"10"	"0"	"1"	"0"
"electron transport and membrane-associated energy conservation "	"FunCat"	"10"	"2.70500672120934e-13"	"1"	"0.000871638829442314"
"energy"	"FunCat"	"10"	"8.02961880576244e-19"	"1"	"7.3955992047833e-05"
"mRNA synthesis "	"FunCat"	"10"	"1.20884408554458e-08"	"1"	"0.00805242530797991"
"RNA synthesis "	"FunCat"	"10"	"1.20884408554458e-08"	"1"	"0.00805242530797991"
"transcription"	"FunCat"	"10"	"2.26146720798304e-12"	"1"	"0.00217052797487652"
"transcriptional control"	"FunCat"	"10"	"5.00202008907137e-11"	"1"	"0.00158369451302939"
"RNA polymerase"	"KEGG"	"10"	"1.96419885475678e-11"	"1"	"0.00534027051288256"
"Transcription"	"KEGG"	"10"	"4.71474309686799e-09"	"1"	"0.0189213568238171"
"Toc apparatus"	"BioPath"	"9"	"3.1527546453686e-11"	"1"	"0.00181890057669479"
"protein-chloroplast targeting"	"TAIR-GO"	"9"	"2.65272195529197e-14"	"1"	"0.000282996388864412"
"chloroplast transport "	"FunCat"	"9"	"7.75313595880455e-11"	"1"	"0.00108628605134688"
"degradation "	"FunCat"	"9"	"1.11258219259409e-07"	"1"	"0.00747828732699695"
"protein degradation "	"FunCat"	"9"	"3.80326927762265e-09"	"1"	"0.0040180435539375"
"protein targeting, sorting and translocation"	"FunCat"	"9"	"1.20946739864588e-11"	"1"	"0.000871638829442314"
"transport routes "	"FunCat"	"9"	"6.84070608062522e-09"	"1"	"0.00360587510969513"
"Protein folding and associated processing"	"KEGG"	"9"	"1.03858594802551e-11"	"1"	"0.00227370500359425"
"additional photosystem II components"	"BioPath"	"8"	"0.000195869681913311"	"1"	"0.0222086987990209"
"Early light-inducible proteins"	"BioPath"	"8"	"8.38520994437214e-11"	"1"	"0.000704349630120598"
"Protein export"	"KEGG"	"8"	"6.67594417796071e-10"	"2"	"5.89431184152988e-05"
"HORMONE DATA SET"	"quantDE"	"0.9324054"	"maxDE"	"2.8284748"	"HORMONE DATA SET"
"proteasome regulatory particle, base subcomplex (sensu Eukaryota)"	"TAIR-GO"	"14"	"1.50434211120069e-23"	"2"	"3.30097811098447e-06"
"protein catabolism"	"TAIR-GO"	"14"	"1.50001763569327e-14"	"2"	"0.000448672435932086"
"ubiquitin-dependent protein catabolism"	"TAIR-GO"	"14"	"2.53710382582940e-15"	"2"	"0.000279548064842175"
"Folding, Sorting and Degradation"	"KEGG"	"14"	"2.82423121842436e-14"	"2"	"0.000652084362146843"
"Proteasome"	"KEGG"	"14"	"1.19315829930439e-18"	"2"	"7.57903971087622e-05"
"Carotenoid biosynthesis"	"BioPath"	"10"	"3.89931731954527e-15"	"1"	"0.000324867771002748"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"10"	"3.42553369519726e-06"	"1"	"0.0183498655214534"
"carotene metabolism"	"TAIR-GO"	"10"	"9.93896212138282e-23"	"1"	"1.09051084201458e-05"
"carotenoid biosynthesis"	"AraCyc"	"10"	"3.73471053069119e-19"	"1"	"0.000156828865374881"
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"10"	"0"	"1"	"0"
"carotenid biosynthesis"	"LitPath"	"10"	"3.25292269531763e-13"	"1"	"0.00140835526514272"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"10"	"8.05330574996763e-11"	"1"	"0.0052711631577342"
"additional photosystem II components"	"BioPath"	"8"	"1.40535225741648e-07"	"1"	"0.00422487356433915"
"Early light-inducible proteins"	"BioPath"	"8"	"2.53769407148353e-14"	"1"	"0.000124667003369862"
"Photosystems "	"BioPath"	"8"	"0.000220619184271266"	"1"	"0.0291422550721012"
"MUTANT DATA SET"	"quantDE"	"1.360741"	"maxDE"	"8.244038392"	"MUTANT DATA SET"
"C-compound and carbohydrate metabolism"	"FunCat"	"176"	"2.30647786433782e-05"	"33"	"0.0520650178046213"
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"146"	"0.00659976693943742"	"19"	"0.307331880249809"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"143"	"2.9820934232452e-14"	"18"	"0.000793581692421151"
"transport "	"FunCat"	"111"	"0"	"20"	"0"
"Pyruvate metabolism"	"KEGG"	"94"	"6.10509726697384e-07"	"14"	"0.0310957681817587"
"Oxidative phosphorylation"	"KEGG"	"85"	"9.42482038626474e-13"	"21"	"4.93376942533419e-05"
"transport facilitation"	"FunCat"	"69"	"0"	"12"	"0"
"development"	"TAIR-GO"	"59"	"5.62781879070629e-06"	"7"	"0.0820246864960991"
"Sulfur metabolism"	"KEGG"	"59"	"8.21730922101294e-12"	"8"	"0.000792274301781104"
"Selenoamino acid metabolism"	"KEGG"	"58"	"5.20879241693462e-08"	"7"	"0.0277298826869205"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"56"	"2.00347393218072e-11"	"6"	"0.0338748062722133"
"biogenesis of chloroplast"	"FunCat"	"56"	"0.00586636670257126"	"11"	"0.0136209989783813"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"55"	"4.64968488193635e-17"	"8"	"0.000168159650863737"
"Valine, leucine and isoleucine degradation"	"KEGG"	"53"	"1.99036149051535e-07"	"8"	"0.0252746788400221"
"Cysteine metabolism"	"KEGG"	"51"	"4.29568502072738e-08"	"7"	"0.0147402093543718"
"Glycine, serine and threonine metabolism"	"KEGG"	"47"	"0.000141802364927504"	"8"	"0.0300877963740955"
"leucine degradation I"	"AraCyc"	"46"	"6.86332207431294e-14"	"6"	"0.00764515935546356"
"leucine degradation II"	"AraCyc"	"46"	"2.26193481709723e-30"	"6"	"5.12110881485726e-05"
"Citrate cycle (TCA cycle)"	"KEGG"	"46"	"0.00356916706260781"	"7"	"0.134205740654981"
"Carotenoid biosynthesis"	"BioPath"	"44"	"5.03371467304212e-18"	"5"	"0.000399275602929054"
"carotenoid biosynthesis"	"AraCyc"	"44"	"2.71605250843272e-20"	"5"	"0.000150347037915743"
"sulfate assimilation III"	"AraCyc"	"44"	"4.4114401077795e-05"	"6"	"0.0428290362067492"
"carotenid biosynthesis"	"LitPath"	"44"	"1.9847975823574e-19"	"5"	"0.000476029299535333"
"Ascorbate and aldarate metabolism"	"KEGG"	"43"	"2.81162620159114e-05"	"6"	"0.0299446459216041"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"43"	"5.04047110147568e-11"	"5"	"0.0166754189414860"
"TCA cycle -- aerobic respiration"	"AraCyc"	"42"	"7.39974726662281e-05"	"8"	"0.0422598806799862"
"TCA cycle variation VIII"	"AraCyc"	"42"	"0.000527769219924041"	"8"	"0.0533225402187978"
"chlorophyll biosynthesis"	"TAIR-GO"	"40"	"1.58033472520071e-07"	"4"	"0.0255397430664085"
"photorespiration"	"AraCyc"	"40"	"4.24717413598166e-11"	"7"	"0.0173012569635214"
"Methionine metabolism"	"KEGG"	"40"	"3.58714109253553e-07"	"4"	"0.0960405409919656"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"40"	"0.0301869289734154"	"4"	"0.305518691043636"
"Synthesis of membrane lipids in endomembrane system"	"AcylLipid"	"39"	"0.00745055633270494"	"6"	"0.146977964418063"
"ATP-dependent proteolysis"	"TAIR-GO"	"38"	"3.63233174964451e-25"	"8"	"3.75089255476821e-07"
"Synthesis of fatty acids in plastids"	"AcylLipid"	"38"	"0.00102337172946582"	"6"	"0.0557379437653229"
"sterol biosynthesis"	"BioPath"	"36"	"0.00668747878210138"	"4"	"0.134801150271852"
"transported compounds (substrates)"	"FunCat"	"35"	"0"	"5"	"0"
"Protein folding and associated processing"	"KEGG"	"35"	"1.78498996268986e-05"	"6"	"0.0366982090964520"
"Chloroplastic protein turnover"	"BioPath"	"34"	"7.06830444874835e-18"	"7"	"5.02877136694315e-06"
"Protein folding / chaperonins (chloroplast)"	"BioPath"	"34"	"1.73433373001171e-12"	"5"	"0.00196588766848485"
"leucine biosynthesis"	"AraCyc"	"34"	"1.5583014767607e-17"	"6"	"0.000515883900418013"
"serine-isocitrate lyase pathway"	"AraCyc"	"34"	"0.0215540009333121"	"6"	"0.162762848986630"
"Propanoate metabolism"	"KEGG"	"34"	"0.00523748769095941"	"5"	"0.166342615097866"
"Bile acid biosynthesis"	"KEGG"	"33"	"2.01916354066054e-07"	"5"	"0.0100578386344889"
"Tryptophan metabolism"	"KEGG"	"33"	"0.00449245040720223"	"6"	"0.125702613233165"
"ascorbic acid biosynthesis"	"BioPath"	"32"	"1.01807017422449e-05"	"4"	"0.0641779984095082"
"growth"	"TAIR-GO"	"32"	"0.0241277170966127"	"4"	"0.188007665185061"
"electron transport"	"TAIR-GO"	"31"	"0.000658641512006547"	"5"	"0.0348398048473942"
"threonine degradation"	"AraCyc"	"31"	"5.27856380781982e-14"	"9"	"1.24743529794757e-05"
"stress response"	"FunCat"	"31"	"0"	"4"	"0"
"sterol biosynthesis"	"TAIR-GO"	"30"	"0.0200027367665808"	"3"	"0.251565317430110"
"aerobic respiration -- electron donors reaction list"	"AraCyc"	"30"	"7.01407817969547e-10"	"9"	"2.0833073813672e-05"
"chlorophyll biosynthesis"	"LitPath"	"30"	"2.17033193348900e-09"	"3"	"0.0118196521385459"
"hypersensitive response"	"TAIR-GO"	"29"	"5.42955201590811e-14"	"3"	"0.00327297219466645"
"Calvin cycle"	"AraCyc"	"29"	"0.00684853773370081"	"7"	"0.0326666507147023"
"degradation "	"FunCat"	"29"	"2.67139444165728e-06"	"6"	"0.0104610041867976"
"protein degradation "	"FunCat"	"29"	"4.09595552038433e-10"	"6"	"0.00146324120967597"
"Cyanoamino acid metabolism"	"KEGG"	"29"	"0.00048165537759185"	"4"	"0.197505825828897"
"Branched-chain amino acids from aspartate"	"BioPath"	"28"	"0.00889114668115866"	"4"	"0.118603303559043"
"Chloroplastic protein import via envelope membrane"	"BioPath"	"28"	"1.13610139773832e-06"	"6"	"0.00232660736759928"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"28"	"2.85324541419493e-06"	"4"	"0.00822293841645324"
"fatty acid biosynthesis"	"TAIR-GO"	"28"	"0.00143876399668421"	"4"	"0.034386058690646"
"photorespiration"	"TAIR-GO"	"28"	"4.24955426929222e-21"	"4"	"3.43515814494794e-05"
"acetyl-CoA assimilation"	"AraCyc"	"28"	"0.0105335742784955"	"5"	"0.0968424733964503"
"glyoxylate cycle"	"AraCyc"	"28"	"0.000420090162448302"	"5"	"0.0231955146450043"
"plant / fungal specific systemic sensing and response "	"FunCat"	"28"	"1.91569193024985e-05"	"3"	"0.108711184324655"
"plant hormonal regulation"	"FunCat"	"28"	"1.91569193024985e-05"	"3"	"0.108711184324655"
"Butanoate metabolism"	"KEGG"	"28"	"0.0323213573829111"	"5"	"0.0840290814502002"
"Ligand-Receptor Interaction"	"KEGG"	"28"	"0.0351051909524224"	"7"	"0.306618803739053"
"regulation of transcription"	"TAIR-GO"	"27"	"0"	"3"	"0"
"isoleucine degradation I"	"AraCyc"	"27"	"0.000456607947194173"	"4"	"0.0871421180550925"
"isoleucine degradation III"	"AraCyc"	"27"	"6.73344165348886e-11"	"4"	"0.00443706910543284"
"calmodulin binding"	"TAIR-GO"	"26"	"5.04061611711723e-07"	"3"	"0.0749989202082298"
"biosynthesis of phenylpropanoids"	"FunCat"	"26"	"0.0260371688064729"	"5"	"0.109909986694299"
"biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine"	"FunCat"	"26"	"0.0260371688064729"	"5"	"0.109909986694299"
"Reductive carboxylate cycle (CO2 fixation)"	"KEGG"	"26"	"0.00668388540153496"	"4"	"0.0960405409919656"
"beta-Alanine metabolism"	"KEGG"	"25"	"0.0140387689076451"	"4"	"0.0960405409919656"
"Pantothenate and CoA biosynthesis"	"KEGG"	"25"	"0.00179738857781598"	"3"	"0.23704426439061"
"ClpP protease complex "	"BioPath"	"24"	"9.46648085626818e-16"	"6"	"4.27650181099955e-06"
"Delta-pH pathway"	"BioPath"	"24"	"0"	"3"	"0"
"ascorbate glutathione cycle"	"AraCyc"	"24"	"1.37443594271886e-05"	"4"	"0.0174284760822913"
"energy"	"FunCat"	"24"	"0"	"6"	"0"
"Histidine metabolism"	"KEGG"	"24"	"0.000465661249795481"	"5"	"0.024553125649751"
"N-Glycan biosynthesis"	"KEGG"	"24"	"0.000111636529729845"	"4"	"0.0653330433839884"
"response to UV"	"TAIR-GO"	"23"	"0.00548040037692425"	"3"	"0.0749989202082298"
"protein folding"	"TAIR-GO"	"22"	"0"	"3"	"0"
"glycine biosynthesis I"	"AraCyc"	"22"	"0.0332058821536987"	"4"	"0.440921236701776"
"homocysteine and cysteine interconversion"	"AraCyc"	"22"	"1.18543025893142e-08"	"3"	"0.0130939221816641"
"methionine biosynthesis II"	"AraCyc"	"22"	"6.13398338185239e-06"	"3"	"0.0349439003796029"
"phenylalanine degradation I"	"AraCyc"	"22"	"0.0182128515989447"	"5"	"0.0482861350294675"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"22"	"3.82329820895525e-06"	"4"	"0.0636597338930775"
"sterol and brassinosteroid biosynthesis"	"LitPath"	"22"	"0.0161045571327484"	"3"	"0.0759380161382208"
"fatty acid beta oxidation complex"	"BioPath"	"21"	"0.0240052396259301"	"3"	"0.199910714436537"
"Phytic acid biosynthesis"	"BioPath"	"21"	"0.0200883415986329"	"4"	"0.089224936405409"
"proteasome regulatory particle, base subcomplex (sensu Eukaryota)"	"TAIR-GO"	"21"	"3.91239299197300e-05"	"3"	"0.0300513007579701"
"Fluorene degradation"	"KEGG"	"21"	"0.0308652332642149"	"3"	"0.108892181587718"
"Cytochrome b6/f complex"	"BioPath"	"20"	"4.72031488633863e-07"	"2"	"0.0614971907438437"
"Other cell wall metabolism related enzymes"	"BioPath"	"20"	"0"	"2"	"0"
"chloroplastic endopeptidase Clp complex"	"TAIR-GO"	"20"	"1.59148698113731e-13"	"5"	"2.71618581684291e-05"
"methionine biosynthesis"	"TAIR-GO"	"20"	"2.56990287254431e-10"	"2"	"0.00766457451794487"
"phenylpropanoid metabolism"	"TAIR-GO"	"20"	"1.12609871307476e-05"	"2"	"0.0314082188869378"
"protein biosynthesis"	"TAIR-GO"	"20"	"0"	"4"	"0"
"isoleucine biosynthesis I"	"AraCyc"	"20"	"2.59692793740592e-06"	"4"	"0.0174284760822913"
"methionine degradation I"	"AraCyc"	"20"	"8.17678129778053e-07"	"2"	"0.0715569150648103"
"valine biosynthesis"	"AraCyc"	"20"	"2.59692793740592e-06"	"4"	"0.0174284760822913"
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"20"	"0.00306885291338745"	"2"	"0.176791019002662"
"channel / pore class transport"	"FunCat"	"20"	"2.94729368101413e-07"	"3"	"0.0520919847996062"
"transport routes "	"FunCat"	"20"	"0.000233279186645905"	"3"	"0.0926456426022744"
"Benzoate degradation via hydroxylation"	"KEGG"	"20"	"0.00187702757748141"	"2"	"0.120604622374492"
"flower development"	"TAIR-GO"	"19"	"7.14444024496301e-08"	"2"	"0.0173405955408021"
"leucine catabolism"	"TAIR-GO"	"19"	"7.85812926732732e-12"	"2"	"0.00211883865376191"
"response to pathogenic bacteria"	"TAIR-GO"	"19"	"2.50014773980779e-08"	"2"	"0.0173405955408021"
"flavonoid biosynthesis"	"AraCyc"	"19"	"0.0356753624298753"	"3"	"0.287582594122833"
"methylglyoxal degradation"	"AraCyc"	"19"	"1.99206439940024e-07"	"4"	"0.00946059665976727"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"19"	"2.84860908402133e-07"	"5"	"0.00094244124154801"
"valine degradation II"	"AraCyc"	"19"	"1.02553842607602e-05"	"4"	"0.022696459367644"
"detoxification"	"FunCat"	"19"	"0"	"4"	"0"
"transcription"	"FunCat"	"19"	"3.77286168221005e-07"	"4"	"0.00839174192384127"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"18"	"0.000243609040351022"	"2"	"0.0300769751614899"
"carotene biosynthesis"	"TAIR-GO"	"18"	"4.13300461334371e-11"	"2"	"0.00211883865376191"
"carotenoid biosynthesis"	"TAIR-GO"	"18"	"0.00102565314819914"	"2"	"0.0722886663566441"
"chloroplast organization and biogenesis"	"TAIR-GO"	"18"	"4.13300461334371e-11"	"3"	"0.00327297219466645"
"indoleacetic acid biosynthesis"	"TAIR-GO"	"18"	"4.17046330986431e-07"	"2"	"0.0173405955408021"
"formylTHF biosynthesis"	"AraCyc"	"18"	"0.00150283207531117"	"3"	"0.100351074928354"
"IAA biosynthesis"	"AraCyc"	"18"	"0.00385138627500151"	"2"	"0.112962014844946"
"IAA biosynthesis I"	"AraCyc"	"18"	"3.77936522895913e-05"	"2"	"0.0540180171998664"
"TCA cycle variation II"	"AraCyc"	"18"	"0.00111729231491956"	"4"	"0.022696459367644"
"lipid transport "	"FunCat"	"18"	"4.8113528945363e-12"	"2"	"0.0361283216987481"
"nucleotide metabolism"	"FunCat"	"18"	"0"	"5"	"0"
"Tetracycline biosynthesis"	"KEGG"	"18"	"6.62398048523908e-08"	"2"	"0.00714611967904532"
"lactose degradation IV"	"AraCyc"	"17"	"1.31402554690884e-11"	"5"	"6.54306630679166e-06"
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	"17"	"6.39009163396828e-06"	"4"	"0.00662121152036086"
"biosynthesis of secondary products derived from primary amino acids"	"FunCat"	"17"	"1.18823805842385e-07"	"4"	"0.00391530596575398"
"electron / hydrogen transport "	"FunCat"	"17"	"2.0394934351123e-09"	"3"	"0.00116627178899440"
"light harvesting complex"	"BioPath"	"16"	"1.86600069089225e-05"	"2"	"0.0186343613769374"
"Toc apparatus"	"BioPath"	"16"	"0.000956521121394116"	"3"	"0.0225566688951606"
"4-hydroxyproline degradation"	"AraCyc"	"16"	"5.8376141429423e-05"	"3"	"0.0189651742914453"
"chloroplast transport "	"FunCat"	"16"	"4.32202942680173e-05"	"2"	"0.0668281521276004"
"response to abiotic stimulus"	"TAIR-GO"	"15"	"0"	"2"	"0"
"response to oxidative stress"	"TAIR-GO"	"15"	"2.65817456738642e-08"	"3"	"0.00121389383604004"
"response to water deprivation"	"TAIR-GO"	"15"	"0"	"3"	"0"
"1- and 2-Methylnaphthalene degradation"	"KEGG"	"15"	"0.00435851207980359"	"3"	"0.0533457389767255"
"response to ethylene stimulus"	"TAIR-GO"	"14"	"0.00238651628164879"	"4"	"0.0255397430664085"
"biosynthesis of nonprotein amino acids"	"FunCat"	"14"	"1.88758654044055e-10"	"2"	"0.00348064969217569"
"C-compound and carbohydrate glyoxylate cycle "	"FunCat"	"14"	"2.11111678894968e-11"	"2"	"0.000938686865783845"
"electron transport and membrane-associated energy conservation "	"FunCat"	"14"	"4.78306417093252e-05"	"4"	"0.000799107457833003"
"glyoxylate cycle"	"FunCat"	"14"	"2.11111678894968e-11"	"2"	"0.000938686865783845"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio"	"KEGG"	"14"	"0.0107101738381570"	"2"	"0.0927442964402681"
"Fatty acid biosynthesis (path 2)"	"KEGG"	"14"	"0.0201559165986395"	"2"	"0.120604622374492"
"Replication complex"	"KEGG"	"14"	"0.000460620800314998"	"3"	"0.0393602862095353"
"polyprenyl diphosphate biosynthesis"	"LitPath"	"14"	"5.75547591646921e-06"	"2"	"0.0498961305600093"
"galactose degradation I"	"AraCyc"	"13"	"2.16151403957490e-07"	"4"	"0.000180798236511926"
"superpathway of gluconate degradation"	"AraCyc"	"13"	"1.86133240876423e-05"	"4"	"0.0174284760822913"
"cytoplasmic and nuclear protein degradation"	"FunCat"	"13"	"6.0869691148172e-08"	"2"	"0.00348064969217569"
"Tic apparatus"	"BioPath"	"12"	"3.36686851350579e-05"	"3"	"0.00619385361142577"
"response to osmotic stress"	"TAIR-GO"	"12"	"7.29624202151104e-06"	"2"	"0.00766457451794487"
"arginine degradation IX"	"AraCyc"	"12"	"0.00598920353725378"	"2"	"0.112962014844946"
"proline degradation II"	"AraCyc"	"12"	"0.00433783673364922"	"2"	"0.0912788178548221"
"C-compound and carbohydrate utilization "	"FunCat"	"12"	"2.60611211041903e-12"	"3"	"0"
"1,2-Dichloroethane degradation"	"KEGG"	"12"	"4.50610203552852e-08"	"2"	"0.00714611967904532"
"Limonene and pinene degradation"	"KEGG"	"12"	"5.61629262439403e-06"	"2"	"0.0294097074755882"
"systemic acquired resistance"	"TAIR-GO"	"11"	"0.0122227794774072"	"2"	"0.0498140183645977"
"ribose degradation"	"AraCyc"	"11"	"0.00039242760262969"	"3"	"0.0262292268844515"
"ion channels"	"FunCat"	"11"	"0.0279862723071982"	"2"	"0.340794043788072"
"Glycosphingolipid metabolism"	"KEGG"	"11"	"0.00250213193045959"	"2"	"0.0679759182603037"
"brassinosteroid biosynthesis"	"BioPath"	"10"	"0.000394818936680453"	"1"	"0.0314319080415764"
"ERD1 protease (ClpC-like)"	"BioPath"	"10"	"0"	"1"	"0"
"Plastoquinone biosynthesis"	"BioPath"	"10"	"6.65407318633635e-10"	"1"	"0.0112712525453555"
"Regulatory enzymes"	"BioPath"	"10"	"0.000394818936680453"	"1"	"0.0314319080415764"
"Tocopherol biosynthesis"	"BioPath"	"10"	"0.029503394588772"	"1"	"0.0907228282196185"
"Transcriptional regulators (chloroplast)"	"BioPath"	"10"	"3.74882796170419e-06"	"1"	"0.0112712525453555"
"biotin binding"	"TAIR-GO"	"10"	"1.15479391878667e-05"	"1"	"0.0165539545817813"
"carotenoid biosynthesis/TAS"	"TAIR-GO"	"10"	"0"	"1"	"0"
"cell communication"	"TAIR-GO"	"10"	"0"	"1"	"0"
"cell death"	"TAIR-GO"	"10"	"0.0127415552519965"	"1"	"0.0831837983576953"
"chlorophyll catabolism"	"TAIR-GO"	"10"	"0.00105412154359140"	"1"	"0.0454241864378201"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"10"	"0.00684868171336135"	"1"	"0.0831837983576953"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"0.00105412154359140"	"1"	"0.0454241864378201"
"cysteine biosynthesis"	"TAIR-GO"	"10"	"0.00105412154359140"	"1"	"0.0454241864378201"
"D-xylose metabolism"	"TAIR-GO"	"10"	"0.000533579500355699"	"1"	"0.0831837983576953"
"defense response to pathogenic bacteria, incompatible interaction"	"TAIR-GO"	"10"	"0.0127415552519965"	"1"	"0.127079266902291"
"etioplast organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glutathione biosynthesis"	"TAIR-GO"	"10"	"1.15479391878667e-05"	"1"	"0.0165539545817813"
"glutathione metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glycine catabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glyoxysome organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"methionine biosynthesis from L-homoserine via cystathione"	"TAIR-GO"	"10"	"0"	"1"	"0"
"methylation-dependent chromatin silencing"	"TAIR-GO"	"10"	"0"	"1"	"0"
"pectin biosynthesis"	"TAIR-GO"	"10"	"1.24939841986321e-06"	"1"	"0.0454241864378201"
"phytochromobilin biosynthesis"	"TAIR-GO"	"10"	"0.00105412154359140"	"1"	"0.0454241864378201"
"plastid organization and biogenesis"	"TAIR-GO"	"10"	"0.000247365822483500"	"1"	"0.0831837983576953"
"plastoquinone biosynthesis"	"TAIR-GO"	"10"	"1.15479391878667e-05"	"1"	"0.0165539545817813"
"positive regulation of transcription"	"TAIR-GO"	"10"	"0.000757506979076136"	"1"	"0.0454241864378201"
"posttranscriptional gene silencing"	"TAIR-GO"	"10"	"0"	"1"	"0"
"protein binding"	"TAIR-GO"	"10"	"0.00255926102350982"	"1"	"0.127079266902291"
"protein complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"protein-chloroplast targeting"	"TAIR-GO"	"10"	"0.00850772273286192"	"2"	"0.0173405955408021"
"response to bacteria"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to cadmium ion"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to gravity"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to pathogenic fungi"	"TAIR-GO"	"10"	"0.000367706217693293"	"1"	"0.0454241864378201"
"response to salicylic acid stimulus"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to toxin"	"TAIR-GO"	"10"	"0"	"1"	"0"
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"vitamin E biosynthesis"	"TAIR-GO"	"10"	"0.0127415552519965"	"1"	"0.0831837983576953"
"xenobiotic catabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"ascorbate biosynthesis"	"AraCyc"	"10"	"0.00535324204942166"	"1"	"0.228269810451578"
"brassinosteroid biosynthesis II"	"AraCyc"	"10"	"0.0319902199550086"	"1"	"0.345323695907187"
"glutathione biosynthesis"	"AraCyc"	"10"	"1.30128783989604e-06"	"1"	"0.0101634523743204"
"methionine and S-adenosylmethionine synthesis"	"AraCyc"	"10"	"0.00152435950642783"	"1"	"0.115970628887922"
"phospholipid desaturation pathway"	"AraCyc"	"10"	"0.0144300741782614"	"1"	"0.0827055031554767"
"plastoquinone biosynthesis"	"AraCyc"	"10"	"7.41060519372013e-05"	"1"	"0.0531183670705053"
"proline biosynthesis I"	"AraCyc"	"10"	"0.000154150497926163"	"3"	"0.00514265957305802"
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	"10"	"0.00903903388748575"	"1"	"0.151873936901932"
"vitamin E biosynthesis"	"AraCyc"	"10"	"0.0402742109322488"	"1"	"0.151873936901932"
"detoxification by modification"	"FunCat"	"10"	"2.90543834303023e-07"	"1"	"0.0269687206768293"
"ionic homeostasis "	"FunCat"	"10"	"0"	"1"	"0"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation"	"KEGG"	"10"	"0.0429533300861673"	"1"	"0.167760010612825"
"Biosynthesis of vancomycin group antibiotics"	"KEGG"	"10"	"1.25052635684425e-07"	"1"	"0.0157496695388909"
"Polyketide sugar unit biosynthesis"	"KEGG"	"10"	"1.25052635684425e-07"	"1"	"0.0157496695388909"
"abscisic acid biosynthesis"	"LitPath"	"10"	"0.0196838578271236"	"2"	"0.0498961305600093"
"chlorophyll catabolism"	"LitPath"	"10"	"0.000227433481221169"	"1"	"0.0344379299940423"
"diterpene biosynthesis"	"LitPath"	"10"	"1.99520121370695e-06"	"1"	"0.0123815605979642"
"Tyr biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"abscisic acid mediated signaling"	"TAIR-GO"	"9"	"0.0130697850307178"	"1"	"0.0831837983576953"
"acetate metabolism"	"TAIR-GO"	"9"	"0"	"1"	"0"
"DNA methylation"	"TAIR-GO"	"9"	"0"	"1"	"0"
"glyoxylate cycle"	"TAIR-GO"	"9"	"0"	"1"	"0"
"induced systemic resistance, jasmonic acid mediated signaling pathway"	"TAIR-GO"	"9"	"0"	"1"	"0"
"jasmonic acid and ethylene-dependent systemic resistance"	"TAIR-GO"	"9"	"2.61325742042018e-05"	"1"	"0.0165539545817813"
"jasmonic acid mediated signaling pathway"	"TAIR-GO"	"9"	"0"	"1"	"0"
"methylglyoxal catabolism"	"TAIR-GO"	"9"	"2.61325742042018e-05"	"1"	"0.0165539545817813"
"negative regulation of signal transduction"	"TAIR-GO"	"9"	"0"	"1"	"0"
"negative regulation of transcription"	"TAIR-GO"	"9"	"0"	"1"	"0"
"nuclear heterochromatin"	"TAIR-GO"	"9"	"0"	"1"	"0"
"nuclear ubiquitin ligase complex"	"TAIR-GO"	"9"	"0"	"1"	"0"
"phosphoinositide-mediated signaling"	"TAIR-GO"	"9"	"0"	"1"	"0"
"photomorphogenesis"	"TAIR-GO"	"9"	"2.61325742042018e-05"	"1"	"0.0454241864378201"
"pollen germination"	"TAIR-GO"	"9"	"0.00162231958330516"	"1"	"0.0454241864378201"
"pollen tube growth"	"TAIR-GO"	"9"	"0.000363381816607892"	"1"	"0.0831837983576953"
"protein amino acid adenylylation"	"TAIR-GO"	"9"	"0"	"1"	"0"
"red, far-red light phototransduction"	"TAIR-GO"	"9"	"0"	"1"	"0"
"RNA interference, production of siRNA"	"TAIR-GO"	"9"	"0"	"1"	"0"
"seed germination"	"TAIR-GO"	"9"	"1.65421039329767e-09"	"1"	"0"
"signal transduction"	"TAIR-GO"	"9"	"0"	"1"	"0"
"sphingosine biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"sulfur metabolism"	"TAIR-GO"	"9"	"0"	"1"	"0"
"alanine degradation III"	"AraCyc"	"9"	"6.8094414236457e-06"	"1"	"0.0284479895949720"
"oxidation of fatty acids "	"FunCat"	"9"	"1.75044004326596e-09"	"1"	"0.00961536480279899"
"chloroplast stroma protein import"	"TAIR-GO"	"8"	"1.88527997528553e-06"	"2"	"0.00211883865376191"
"nonphotochemical quenching"	"TAIR-GO"	"8"	"0.000196139545515358"	"1"	"0.0165539545817813"
"photosystem I antenna complex"	"TAIR-GO"	"8"	"0"	"1"	"0"
"PSII associated light-harvesting complex II"	"TAIR-GO"	"8"	"5.92794074732924e-05"	"1"	"0.0165539545817813"
"xanthophyll biosynthesis "	"TAIR-GO"	"8"	"0"	"1"	"0"
"xanthophyll cycle"	"AraCyc"	"8"	"3.41427242225707e-05"	"1"	"0.0101634523743204"
"accessory proteins of photosynthetic electron transport "	"FunCat"	"8"	"2.7199628191075e-07"	"1"	"0.00961536480279899"
"energy conversion and regeneration "	"FunCat"	"8"	"2.0287452988703e-06"	"1"	"0.0269687206768293"
"auxin biosynthesis"	"TAIR-GO"	"7"	"0.0375440562109466"	"1"	"0.0831837983576953"
"cell wall organization and biogenesis (sensu Magnoliophyta)"	"TAIR-GO"	"7"	"0.00183351335879075"	"1"	"0.0454241864378201"
"DNA-directed RNA polymerase II, holoenzyme"	"TAIR-GO"	"7"	"0"	"1"	"0"
"isopentenyl diphosphate biosynthesis, mevalonate-independent pathway"	"TAIR-GO"	"7"	"0"	"1"	"0"
"photoreactive repair"	"TAIR-GO"	"7"	"0.000134837445612237"	"1"	"0.0165539545817813"
"protein amino acid glycosylation"	"TAIR-GO"	"7"	"0"	"1"	"0"
"protein amino acid N-linked glycosylation via asparagine"	"TAIR-GO"	"7"	"0"	"1"	"0"
"systemic acquired resistance, salicylic acid mediated signaling pathway"	"TAIR-GO"	"7"	"0.000753839729150603"	"1"	"0.0454241864378201"
"rRNA synthesis "	"FunCat"	"7"	"1.24282701279572e-05"	"1"	"0.00961536480279899"
"tRNA synthesis "	"FunCat"	"7"	"0.0231763552053080"	"1"	"0.145092745994664"