"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN TWO DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"70"	"12"	""	""
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"50"	"8"	""	""
"Benzoate degradation via CoA ligation"	"KEGG"	"39"	"15"	""	""
"Inositol phosphate metabolism"	"KEGG"	"39"	"15"	""	""
"Nicotinate and nicotinamide metabolism"	"KEGG"	"39"	"15"	""	""
"nucleotide metabolism"	"FunCat"	"24"	"3"	""	""
"methionine biosynthesis II"	"AraCyc"	"19"	"2"	""	""
"ORGAN DATA SET"	"quantDE"	"0"	"maxDE"	"1.6886013"	"ORGAN DATA SET"
"STRESS DATA SET"	"quantDE"	"0.4979923"	"maxDE"	"2.471802"	"STRESS DATA SET"
"HORMONE DATA SET"	"quantDE"	"1.417409"	"maxDE"	"4.0276718"	"HORMONE DATA SET"
"C-compound and carbohydrate metabolism"	"FunCat"	"20"	"0.000284140563470624"	"4"	"0.0540154128288128"
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"18"	"1.93338826466672e-08"	"4"	"0.00162506871010857"
"Benzoate degradation via CoA ligation"	"KEGG"	"18"	"3.85364945570019e-12"	"8"	"6.24641821452435e-07"
"Inositol phosphate metabolism"	"KEGG"	"18"	"2.11315842545481e-11"	"8"	"1.30988757286008e-06"
"Nicotinate and nicotinamide metabolism"	"KEGG"	"18"	"3.18957769296977e-13"	"8"	"3.06078867234433e-07"
"Intermediary Carbon Metabolism"	"BioPath"	"16"	"2.64490642724197e-08"	"3"	"0.00965319931560632"
"Glycolysis / Gluconeogenesis"	"KEGG"	"16"	"3.05717844919191e-09"	"3"	"0.0123150191283519"
"nucleotide metabolism"	"FunCat"	"15"	"0"	"2"	"0"
"purine nucleotide metabolism"	"FunCat"	"15"	"1.59565989842476e-16"	"2"	"0.000551884622488628"
"allantoin degradation"	"AraCyc"	"12"	"1.09510463866521e-25"	"2"	"1.67031446053808e-07"
"isoleucine biosynthesis I"	"AraCyc"	"12"	"2.02978781855987e-16"	"2"	"8.9069309565197e-05"
"leucine biosynthesis"	"AraCyc"	"12"	"2.02978781855987e-16"	"2"	"8.9069309565197e-05"
"trans-zeatin biosynthesis"	"AraCyc"	"12"	"2.87539440978090e-19"	"2"	"9.17927330993542e-06"
"valine biosynthesis"	"AraCyc"	"12"	"2.02978781855987e-16"	"2"	"8.9069309565197e-05"
"fermentation"	"FunCat"	"12"	"2.12670495221524e-15"	"2"	"0.000123822943831806"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"10"	"3.6815648666041e-10"	"2"	"0.000542644528532991"
"methionine biosynthesis II"	"AraCyc"	"9"	"7.8781205262563e-11"	"1"	"0.00238225997181173"
"threonine biosynthesis from homoserine"	"AraCyc"	"9"	"1.11415965242877e-14"	"1"	"0.000314111200168713"
"amino acid metabolism"	"FunCat"	"9"	"0.0253523650621607"	"1"	"0.199306631678926"
"pyrimidine nucleotide metabolism"	"FunCat"	"9"	"1.77601635035526e-10"	"1"	"0.00780845228256221"
"Glutathione metabolism"	"BioPath"	"8"	"5.31307379117395e-05"	"2"	"0.00612987130021652"
"glycolysis and gluconeogenesis"	"FunCat"	"8"	"0.0321657676004158"	"2"	"0.0650852046445849"
"MUTANT DATA SET"	"quantDE"	"0.338549"	"maxDE"	"5.918807712"	"MUTANT DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	"68"	"1.99833036824540e-15"	"10"	"0.00196907194743812"
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"52"	"2.8475342609787e-07"	"8"	"0.0150134010503240"
"Shikimate pathway"	"LitPath"	"48"	"1.11262524300051e-16"	"7"	"0.000332983151172446"
"Phenylpropanoid pathway"	"LitPath"	"46"	"5.92342241741937e-09"	"8"	"0.00922536979881373"
"tryptophan biosynthesis"	"TAIR-GO"	"44"	"9.68434736195348e-40"	"6"	"1.63889953200986e-07"
"tryptophan biosynthesis"	"AraCyc"	"44"	"2.08539122557232e-37"	"6"	"1.35860162890871e-06"
"Trp biosyntesis"	"LitPath"	"44"	"1.15641969930689e-28"	"6"	"4.59452313923391e-06"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"42"	"1.99774427455896e-19"	"6"	"0.000251880291494975"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"40"	"8.51138537263189e-27"	"6"	"4.03360140084004e-06"
"response to pathogenic bacteria"	"TAIR-GO"	"34"	"3.6029742265909e-52"	"5"	"0"
"Lipid signaling"	"AcylLipid"	"34"	"0.00183005503769757"	"11"	"0.0187323691828824"
"lignin biosynthesis"	"AraCyc"	"30"	"2.41411287569459e-13"	"5"	"0.000469443205162821"
"core phenylpropanoid metabolism"	"BioPath"	"26"	"2.95571052898651e-09"	"4"	"0.00378638419019137"
"secondary metabolism"	"FunCat"	"26"	"5.69522138543196e-14"	"5"	"0.00171229913809052"
"Propanoate metabolism"	"KEGG"	"26"	"3.11118094055939e-16"	"4"	"0.00103432866764704"
"biosynthesis of proto- and siroheme"	"AraCyc"	"24"	"8.19160338774438e-11"	"3"	"0.0144611546193513"
"biogenesis of chloroplast"	"FunCat"	"24"	"2.3810326769853e-08"	"3"	"0.0426675393009716"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"22"	"8.4830994150629e-08"	"3"	"0.0266998023743958"
"Benzoate degradation via CoA ligation"	"KEGG"	"21"	"2.12149785042996e-05"	"7"	"0.00233171149175335"
"Inositol phosphate metabolism"	"KEGG"	"21"	"9.14435732605107e-05"	"7"	"0.00400135210836004"
"Nicotinate and nicotinamide metabolism"	"KEGG"	"21"	"2.26731039996498e-06"	"7"	"0.00137290841070211"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"20"	"4.38447358274348e-06"	"2"	"0.0420186238034071"
"ethylene biosynthesis"	"TAIR-GO"	"20"	"2.90291873146576e-20"	"3"	"3.82565640236654e-05"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"20"	"6.70478216960655e-09"	"2"	"0.0340327014752497"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"20"	"0.0294359330799777"	"2"	"0.211973646058214"
"gibberellic acid catabolism"	"TAIR-GO"	"19"	"1.70911904243809e-20"	"2"	"0.000211377981005940"
"triacylglycerol degradation"	"AraCyc"	"18"	"3.11385879173125e-10"	"5"	"0.00129015364928631"
"Nucleotide sugars metabolism"	"KEGG"	"18"	"1.24422515476130e-13"	"5"	"6.43743668511686e-06"
"phospholipid biosynthesis II"	"AraCyc"	"16"	"1.04214503015127e-08"	"3"	"0.00146258012572897"
"C-compound and carbohydrate utilization "	"FunCat"	"16"	"0"	"3"	"0"
"defense response"	"TAIR-GO"	"15"	"2.01840015755179e-06"	"3"	"0.00204921908927526"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"15"	"0.00614664203676977"	"4"	"0.123714737357980"
"chlorophyll biosynthesis"	"AraCyc"	"14"	"0.00318012160047155"	"2"	"0.119709831029861"
"fructose degradation (anaerobic)"	"AraCyc"	"14"	"0.00318012160047155"	"3"	"0.0579329587560662"
"sorbitol fermentation"	"AraCyc"	"14"	"0.00581162143692233"	"3"	"0.0665530443088636"
"energy"	"FunCat"	"14"	"2.86056471051489e-24"	"3"	"0"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"14"	"0"	"3"	"0"
"toxin catabolism"	"TAIR-GO"	"12"	"2.58643614989366e-05"	"6"	"0.000205379858530382"
"colanic acid building blocks biosynthesis"	"AraCyc"	"12"	"0.00725524411785201"	"2"	"0.140775498284739"
"flavonoid biosynthesis"	"AraCyc"	"12"	"1.43298336689177e-05"	"2"	"0.0238817000141633"
"intracellular signalling"	"FunCat"	"12"	"6.95391618133417e-05"	"5"	"0.00108015751408654"
"Alanine and aspartate metabolism"	"KEGG"	"12"	"0.000231632408646755"	"2"	"0.048461873631509"
"beta-Alanine metabolism"	"KEGG"	"12"	"2.89502978254777e-06"	"2"	"0.0151713536563060"
"Butanoate metabolism"	"KEGG"	"12"	"2.61310501964571e-05"	"2"	"0.0278044997939909"
"Glutamate metabolism"	"KEGG"	"12"	"0.0136948893766289"	"2"	"0.106126308796340"
"Taurine and hypotaurine metabolism"	"KEGG"	"12"	"9.52293949860444e-14"	"2"	"0.000178189058653179"
"response to auxin stimulus"	"TAIR-GO"	"11"	"2.17481968280868e-08"	"2"	"0.00163632688522559"
"aging"	"TAIR-GO"	"10"	"1.82033468426114e-07"	"1"	"0.0200469780810606"
"jasmonic acid biosynthesis"	"TAIR-GO"	"10"	"0.000498181023029883"	"2"	"0.0154132544150949"
"lignin biosynthesis"	"TAIR-GO"	"10"	"7.38270007711205e-06"	"1"	"0.0253071641370135"
"lipid metabolism"	"TAIR-GO"	"10"	"5.58343242557662e-11"	"1"	"0.00235508078323903"
"methionine biosynthesis"	"TAIR-GO"	"10"	"5.3864428761706e-10"	"1"	"0.00462386186890874"
"phenylpropanoid metabolism"	"TAIR-GO"	"10"	"1.51934381876347e-07"	"1"	"0.0111411771926140"
"phospholipid metabolism"	"TAIR-GO"	"10"	"2.13621146777821e-13"	"1"	"0.000799707950810691"
"porphyrin biosynthesis"	"TAIR-GO"	"10"	"1.15111481088954e-05"	"1"	"0.0509802621142702"
"sulfate assimilation"	"TAIR-GO"	"10"	"6.8415709409633e-07"	"1"	"0.0200469780810606"
"dissimilatory sulfate reduction"	"AraCyc"	"10"	"3.81422172394415e-07"	"1"	"0.0104437351046405"
"jasmonic acid biosynthesis"	"AraCyc"	"10"	"0.000270447751161242"	"2"	"0.0077453997256082"
"lipoxygenase pathway"	"AraCyc"	"10"	"5.22221668357758e-06"	"2"	"0.00231063951098671"
"methionine biosynthesis II"	"AraCyc"	"10"	"5.22221668357758e-06"	"1"	"0.0354283197009991"
"sulfate assimilation III"	"AraCyc"	"10"	"0.033469083702879"	"1"	"0.178584229649692"
"triacylglycerol biosynthesis"	"AraCyc"	"10"	"5.69260435275802e-08"	"1"	"0.0075741363883563"
"aerobic respiration"	"FunCat"	"10"	"3.36302660888503e-06"	"1"	"0.0410336790241345"
"nitrogen and sulfur utilization "	"FunCat"	"10"	"2.05068396269012e-07"	"1"	"0.0227310909120328"
"respiration"	"FunCat"	"10"	"3.36302660888503e-06"	"1"	"0.0410336790241345"
"Cysteine metabolism"	"KEGG"	"10"	"0.00192972387697625"	"2"	"0.0340327014752497"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"9.31034158578166e-05"	"1"	"0.0391835025844827"
"Ion channels"	"KEGG"	"10"	"0.000390031841420406"	"5"	"0.00173125274868745"
"Ligand-Receptor Interaction"	"KEGG"	"10"	"0.000495781876347874"	"5"	"0.00213550297442646"
"Methionine metabolism"	"KEGG"	"10"	"0.000191527266338042"	"1"	"0.0983566468953868"
"Selenoamino acid metabolism"	"KEGG"	"10"	"0.0076336444698458"	"1"	"0.190405034860052"
"Sulfur metabolism"	"KEGG"	"10"	"0.00202103561285171"	"1"	"0.115598586808994"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"10"	"0.00528528055043398"	"1"	"0.144786621585702"
"giberelin catabolism"	"LitPath"	"10"	"3.88086213004537e-10"	"1"	"0.00229384701604389"
"phytochromobilin biosynthesis"	"LitPath"	"10"	"0.000247932117754632"	"1"	"0.0412911881655008"
"arabinose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"9"	"0.000379604914646262"	"1"	"0.0913772446881747"
"N-terminal protein myristoylation"	"TAIR-GO"	"9"	"4.02927296257282e-05"	"1"	"0.0372780764261555"
"nucleotide metabolism"	"TAIR-GO"	"9"	"1.81499836398270e-11"	"1"	"0.00235508078323903"
"IAA conjugate biosynthesis II"	"AraCyc"	"9"	"0"	"1"	"0"
"Galactose metabolism"	"KEGG"	"9"	"0.0101659572188024"	"1"	"0.200194218393055"
"Leaf Glycerolipid Biosynthesis in cytosol / ER"	"BioPath"	"8"	"0.0469239664922616"	"2"	"0.0328721470504863"
"response to wounding"	"TAIR-GO"	"8"	"0.0287451595997364"	"2"	"0.0230608776247483"
"alanine biosynthesis II"	"AraCyc"	"8"	"0.00229033571188531"	"2"	"0.0194155009008992"
"phenylalanine biosynthesis II"	"AraCyc"	"8"	"0.000620988654083385"	"2"	"0.0136685688427348"
"trehalose biosynthesis III"	"AraCyc"	"8"	"0.0101410975480564"	"2"	"0.0372699428244850"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"8"	"0.0041773345431797"	"3"	"0.0944042848215385"
"indole phytoalexin biosynthesis"	"TAIR-GO"	"7"	"0"	"1"	"0"
"salicylic acid biosynthesis"	"TAIR-GO"	"7"	"2.31525018073908e-09"	"1"	"0.000799707950810691"
"camalexin biosynthesis"	"AraCyc"	"7"	"0"	"1"	"0"
"Ascorbate and aldarate metabolism"	"KEGG"	"7"	"0.0379037184391582"	"1"	"0.142733341133830"
"Fluorene degradation"	"KEGG"	"7"	"0.00240622670067842"	"1"	"0.0591981407717906"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"7"	"0.00585765502690225"	"1"	"0.0740934861053514"
"camalexin biosynthesis"	"LitPath"	"7"	"0"	"1"	"0"