"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN THREE DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"80"	"15"	""	""
"Biosynthesis of steroids"	"KEGG"	"72"	"11"	""	""
"triterpene biosynthesis"	"LitPath"	"54"	"8"	""	""
"isoprenoid biosynthesis "	"FunCat"	"47"	"10"	""	""
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"47"	"10"	""	""
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"42"	"6"	""	""
"secondary metabolism"	"FunCat"	"41"	"9"	""	""
"ORGAN DATA SET"	"quantDE"	"4.148669"	"maxDE"	"5.6556746"	"ORGAN DATA SET"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"54"	"1.40374575606096e-36"	"21"	"9.73929046804066e-15"
"Methane metabolism"	"KEGG"	"48"	"1.11638249800404e-40"	"21"	"9.45998303805026e-17"
"Phenylalanine metabolism"	"KEGG"	"44"	"2.52305889451837e-29"	"20"	"7.08355622983438e-15"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"44"	"3.48971209171462e-45"	"20"	"9.29676484853108e-18"
"Phenylpropanoid Metabolism"	"BioPath"	"30"	"1.82465986318025e-11"	"7"	"0.000269458056747490"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"27"	"7.96490576622013e-13"	"4"	"0.00562967897814609"
"terpenoid metabolism"	"LitPath"	"27"	"9.20486551661922e-13"	"4"	"0.00648895374397726"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"26"	"0.000115734754722574"	"6"	"0.0118982909590950"
"detoxification"	"FunCat"	"23"	"0"	"8"	"0"
"isoprenoid biosynthesis "	"FunCat"	"22"	"1.15856822994663e-10"	"5"	"0.000545060058626588"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"22"	"7.78349136431011e-12"	"5"	"0.000250663316925363"
"Glucosyltransferases for benzoic acids"	"BioPath"	"20"	"5.90597338147222e-22"	"2"	"0.000281065449073199"
"Biosynthesis of steroids"	"KEGG"	"20"	"1.25366273179793e-06"	"3"	"0.0396538160623453"
"triterpene biosynthesis"	"LitPath"	"20"	"8.6621939517077e-16"	"3"	"0.000355670038567166"
"monoterpenoid biosynthesis"	"TAIR-GO"	"19"	"1.46541320457145e-29"	"2"	"8.18933316232412e-06"
"monoterpene biosynthesis"	"LitPath"	"19"	"5.39175545188744e-18"	"2"	"0.00053352539197007"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"18"	"0.0261887331976760"	"4"	"0.272338395894589"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"18"	"3.69987259168084e-07"	"3"	"0.0512830150717842"
"Lipid signaling"	"AcylLipid"	"18"	"0.0121931560589067"	"3"	"0.414241199473822"
"secondary metabolism"	"FunCat"	"17"	"4.52325947057693e-09"	"4"	"0.00343135652523995"
"lactose degradation IV"	"AraCyc"	"16"	"3.68730916808381e-26"	"3"	"5.75124387105001e-07"
"flavonol biosynthesis"	"AraCyc"	"15"	"4.77613759110798e-16"	"3"	"7.11473080898499e-05"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"14"	"3.34881377319059e-16"	"2"	"0.000110669300346979"
"toxin catabolism"	"TAIR-GO"	"12"	"3.40363969684207e-09"	"6"	"9.77007397239093e-07"
"colanic acid building blocks biosynthesis"	"AraCyc"	"12"	"7.75580888193276e-06"	"2"	"0.0274178477289638"
"dTDP-rhamnose biosynthesis"	"AraCyc"	"12"	"2.23456708222724e-07"	"2"	"0.0135716693370896"
"galactose degradation I"	"AraCyc"	"12"	"3.43701075759486e-18"	"2"	"5.17779740046897e-05"
"glucose conversion"	"AraCyc"	"12"	"8.26897419649453e-08"	"2"	"0.0111352955102058"
"UDP-glucose conversion"	"AraCyc"	"12"	"6.10445026167241e-08"	"2"	"0.0103848547985393"
"detoxification involving cytochrome P450 "	"FunCat"	"11"	"1.11998662581935e-15"	"2"	"0.000969417199997472"
"GDP-carbohydrate biosynthesis"	"BioPath"	"10"	"1.83272929627833e-12"	"1"	"0.00459192398012145"
"cell death"	"TAIR-GO"	"10"	"4.08981780913775e-13"	"1"	"0.000996165829667815"
"fatty acid alpha-oxidation"	"TAIR-GO"	"10"	"0"	"1"	"0"
"fatty acid metabolism"	"TAIR-GO"	"10"	"6.75871430992909e-06"	"1"	"0.0419939968995081"
"jasmonic acid biosynthesis"	"AraCyc"	"10"	"3.32263083110870e-07"	"1"	"0.0184047923301412"
"lipoxygenase pathway"	"AraCyc"	"10"	"3.90433129986903e-09"	"1"	"0.008303366541694"
"Ascorbate and aldarate metabolism"	"KEGG"	"10"	"0.000181975977341497"	"1"	"0.156154229216785"
"Fluorene degradation"	"KEGG"	"10"	"1.87092489555989e-06"	"1"	"0.0653895857712381"
"Fructose and mannose metabolism"	"KEGG"	"10"	"0.00650844397704406"	"1"	"0.375187569873928"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"10"	"7.82122705158469e-06"	"1"	"0.081682362437648"
"fatty acid modulation"	"LitPath"	"10"	"3.63534180148645e-12"	"1"	"0.00152488693680191"
"defense response"	"TAIR-GO"	"9"	"1.28456207735602e-05"	"1"	"0.0276928174499891"
"defense response to fungi"	"TAIR-GO"	"9"	"0"	"1"	"0"
"ethylene mediated signaling pathway"	"TAIR-GO"	"9"	"6.20841771744138e-18"	"1"	"0.000168769535073685"
"jasmonic acid and ethylene-dependent systemic resistance"	"TAIR-GO"	"9"	"9.05622785923011e-16"	"1"	"0.000168769535073685"
"jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway"	"TAIR-GO"	"9"	"0"	"1"	"0"
"monoterpene biosynthesis"	"AraCyc"	"9"	"1.08691742015973e-12"	"1"	"0.000403840821006485"
"plant monoterpene biosynthesis"	"AraCyc"	"9"	"5.58349563419449e-15"	"1"	"0.000135633149594958"
"Aminosugars metabolism"	"KEGG"	"9"	"1.58655723104525e-06"	"1"	"0.117375223535970"
"Flavonoid and anthocyanin metabolism"	"BioPath"	"8"	"3.10312541443252e-05"	"4"	"0.000218081145772803"
"pectin metabolism"	"BioPath"	"8"	"0.00734933778468487"	"3"	"0.0685151529687111"
"storage protein"	"FunCat"	"8"	"1.26505860836306e-12"	"2"	"4.80356134492442e-05"
"cation transport (Na, K, Ca , NH4, etc.) "	"FunCat"	"7"	"2.84394317158781e-10"	"1"	"0.000874728907597622"
"heavy metal ion transport (Cu, Fe, etc.)"	"FunCat"	"7"	"1.50716720667642e-11"	"1"	"0.000294858824232409"
"ion transport "	"FunCat"	"7"	"0"	"1"	"0"
"transport "	"FunCat"	"7"	"2.68294193374267e-11"	"1"	"0.000874728907597622"
"transport facilitation"	"FunCat"	"7"	"0"	"1"	"0.000874728907597622"
"transported compounds (substrates)"	"FunCat"	"7"	"0"	"1"	"0"
"STRESS DATA SET"	"quantDE"	"1.346198"	"maxDE"	"4.873971"	"STRESS DATA SET"
"HORMONE DATA SET"	"quantDE"	"2.266257"	"maxDE"	"5.5835929"	"HORMONE DATA SET"
"Biosynthesis of steroids"	"KEGG"	"28"	"3.6211989539324e-28"	"4"	"7.31068754478677e-07"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"28"	"2.46460982201362e-10"	"4"	"0.00555693409603672"
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	"24"	"7.60552851007745e-15"	"3"	"0.000858027943452985"
"sterol biosynthesis"	"TAIR-GO"	"24"	"1.81584404126100e-33"	"3"	"5.35623528145889e-07"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"18"	"0.0162398310117501"	"2"	"0.435507804455243"
"Starch and sucrose metabolism"	"KEGG"	"18"	"1.16476235853004e-13"	"2"	"0.00321158119771446"
"sterol biosynthesis"	"BioPath"	"14"	"4.53012953561618e-11"	"2"	"0.000730920421576264"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"14"	"8.18584461504501e-23"	"2"	"2.46757005826013e-06"
"sterol biosynthesis"	"AraCyc"	"14"	"1.67440532570834e-17"	"2"	"1.26164202233251e-05"
"triterpene biosynthesis"	"LitPath"	"14"	"2.83474685497273e-12"	"2"	"0.000611011949915717"
"C-compound and carbohydrate metabolism"	"FunCat"	"12"	"0.0220191010492119"	"2"	"0.212364933481515"
"glycolysis and gluconeogenesis"	"FunCat"	"12"	"2.72795019543127e-05"	"2"	"0.0322302525549301"
"Biosynthesis of prenyl diphosphates"	"BioPath"	"10"	"3.36052243985901e-05"	"1"	"0.0384758413143651"
"sucrose metabolism"	"BioPath"	"10"	"2.81720446311946e-09"	"1"	"0.00773502929257943"
"isoprenoid biosynthesis"	"TAIR-GO"	"10"	"1.13308870705603e-16"	"1"	"0.000144513388046403"
"tryptophan catabolism"	"TAIR-GO"	"10"	"5.61220637908579e-22"	"1"	"1.45401445601944e-05"
"glucosinolate biosynthesis from tryptophan"	"AraCyc"	"10"	"5.39860504953812e-20"	"1"	"1.69158243969400e-05"
"IAA biosynthesis"	"AraCyc"	"10"	"5.00139851712448e-14"	"1"	"0.000367695690505532"
"IAA biosynthesis I"	"AraCyc"	"10"	"9.5439689640372e-16"	"1"	"0.000201367624084003"
"mevalonate pathway"	"AraCyc"	"10"	"3.6811422902852e-13"	"1"	"0.000943787873697611"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"10"	"1.33932817549056e-07"	"1"	"0.0250780183731976"
"Galactose metabolism"	"KEGG"	"10"	"1.34370468359944e-09"	"1"	"0.00687079944970723"
"Glucosinolate Metabolism"	"LitPath"	"10"	"0.00118251861128521"	"1"	"0.048173528550427"
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"10"	"0.000250746128291481"	"1"	"0.0529495801186961"
"mevalonate pathway, cytosol"	"LitPath"	"10"	"1.13104725739839e-06"	"1"	"0.0168992130638153"
"sterol biosynthesis"	"LitPath"	"10"	"7.69313598232610e-12"	"1"	"0.00198937964363037"
"secondary metabolism"	"FunCat"	"9"	"1.42912410488002e-06"	"2"	"0.00528197162577442"
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	"8"	"0.0028747286601883"	"2"	"0.00714620374217592"
"pectin metabolism"	"BioPath"	"8"	"0.00534406427882069"	"1"	"0.289698334527257"
"isoprenoid biosynthesis "	"FunCat"	"8"	"0.000134854260757331"	"2"	"0.00553377919619949"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"8"	"4.85926694624179e-05"	"2"	"0.00371490679037162"
"storage protein"	"FunCat"	"8"	"5.93813591735127e-16"	"2"	"1.90873752836352e-06"
"Pentose and glucuronate interconversions"	"KEGG"	"8"	"2.05774548211087e-10"	"1"	"0.00161210490544241"
"Lipid signaling"	"AcylLipid"	"8"	"0.00417559407257153"	"2"	"0.0499101663881048"
"Synthesis of fatty acids in plastids"	"AcylLipid"	"8"	"4.52968608716548e-06"	"2"	"0.00167477741111167"
"MUTANT DATA SET"	"quantDE"	"4.68637"	"maxDE"	"6.745729"	"MUTANT DATA SET"
"Ribosome"	"KEGG"	"40"	"9.5397225225107e-07"	"7"	"0.00856872836941427"
"Intermediary Carbon Metabolism"	"BioPath"	"34"	"2.22908993843490e-10"	"5"	"0.00708700774897932"
"glycolysis and gluconeogenesis"	"FunCat"	"34"	"1.34559925500061e-08"	"5"	"0.00675467516037008"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"26"	"9.1421059219708e-13"	"5"	"0.000426641742035412"
"Biosynthesis of steroids"	"KEGG"	"24"	"1.35462254465335e-11"	"4"	"0.000176100167464699"
"Gluconeogenesis from lipids in seeds"	"BioPath"	"22"	"7.5441047798122e-10"	"3"	"0.00655559696074758"
"Photosystems "	"BioPath"	"22"	"2.30578810822919e-05"	"3"	"0.0296753550779494"
"acetate fermentation"	"AraCyc"	"22"	"1.07267449240310e-11"	"3"	"0.0030068211924599"
"fructose degradation (anaerobic)"	"AraCyc"	"22"	"3.20580175324224e-12"	"3"	"0.00227087628569727"
"glycerol degradation II"	"AraCyc"	"22"	"7.94123946807815e-15"	"3"	"0.000637537737788535"
"glycolysis I"	"AraCyc"	"22"	"1.87329938435971e-06"	"3"	"0.0268538775955711"
"glycolysis IV"	"AraCyc"	"22"	"3.74609394736265e-12"	"3"	"0.00240679412620496"
"sorbitol fermentation"	"AraCyc"	"22"	"1.24014284961332e-11"	"3"	"0.0026953117982443"
"Glycolysis / Gluconeogenesis"	"KEGG"	"22"	"7.83597678395003e-09"	"3"	"0.0123150191283519"
"triterpene biosynthesis"	"LitPath"	"20"	"1.25109581769627e-23"	"3"	"1.11821284216368e-05"
"isoprenoid biosynthesis "	"FunCat"	"17"	"0.000219506508210545"	"3"	"0.0117436142226915"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"17"	"4.0459140733943e-05"	"3"	"0.00717991829100965"
"additional photosystem II components"	"BioPath"	"16"	"9.09886540268246e-08"	"2"	"0.00907514375671053"
"ATP synthase components"	"BioPath"	"16"	"1.24918727422498e-17"	"2"	"0.000148701647890608"
"ATP synthesis coupled proton transport"	"TAIR-GO"	"16"	"8.70522790746139e-19"	"2"	"6.52352565117074e-05"
"proton transport"	"TAIR-GO"	"16"	"8.70522790746139e-19"	"2"	"6.52352565117074e-05"
"Calvin cycle"	"AraCyc"	"16"	"4.9229135037357e-10"	"2"	"0.00457296507140365"
"gluconeogenesis"	"AraCyc"	"16"	"2.03472381684811e-08"	"2"	"0.00736708324335527"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"16"	"1.30618694128240e-13"	"2"	"0.00105332910286794"
"Carbon fixation"	"KEGG"	"16"	"7.25501427596868e-06"	"2"	"0.0405187066637318"
"secondary metabolism"	"FunCat"	"15"	"5.08753085364804e-05"	"3"	"0.0110917391728707"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"14"	"1.34754034450383e-12"	"2"	"0.000350856772365076"
"Phenylalanine metabolism"	"KEGG"	"12"	"0.000174523674454746"	"2"	"0.0823158154086857"
"core phenylpropanoid metabolism"	"BioPath"	"10"	"0.00108639901654015"	"1"	"0.0907673720719375"
"starch metabolism"	"BioPath"	"10"	"1.99688424868314e-05"	"1"	"0.0442376709639316"
"Transporters required for plastid development"	"BioPath"	"10"	"0"	"1"	"0"
"defense response"	"TAIR-GO"	"10"	"0.00032248050589185"	"1"	"0.0556987867357807"
"glycolysis"	"TAIR-GO"	"10"	"8.46802935635565e-15"	"1"	"0.000365061486636309"
"iron ion homeostasis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"phenylpropanoid biosynthesis"	"TAIR-GO"	"10"	"2.44667907686862e-09"	"1"	"0.00351836584697992"
"proton-transporting ATP synthase, catalytic core (sensu Eukaryota)"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to heat"	"TAIR-GO"	"10"	"5.27641834797951e-07"	"1"	"0.0213165658661275"
"response to oxidative stress"	"TAIR-GO"	"10"	"1.27164904797095e-12"	"1"	"0.00351836584697992"
"response to stress"	"TAIR-GO"	"10"	"1.32800041230041e-10"	"1"	"0.00213711361079263"
"response to sucrose stimulus"	"TAIR-GO"	"10"	"3.22002200021154e-10"	"1"	"0.00521318632575415"
"response to wounding"	"TAIR-GO"	"10"	"0.000685207773308125"	"1"	"0.0661076549868259"
"starch catabolism"	"TAIR-GO"	"10"	"1.41338341932868e-13"	"1"	"0.00108178087651381"
"lignin biosynthesis"	"AraCyc"	"10"	"0.000783195593510583"	"1"	"0.0590262413890293"
"phenylpropanoid pathway, initial reactions"	"AraCyc"	"10"	"7.33667482639641e-11"	"1"	"0.000777076679963126"
"salicylic acid biosynthesis"	"AraCyc"	"10"	"1.78966832823048e-10"	"1"	"0.00115900545788388"
"starch degradation"	"AraCyc"	"10"	"2.40012093455353e-08"	"1"	"0.00770932377778317"
"suberin biosynthesis"	"AraCyc"	"10"	"2.30090361697584e-06"	"1"	"0.0110446883335940"
"biosynthesis of phenylpropanoids"	"FunCat"	"10"	"0.000770352087978544"	"1"	"0.0887892393103055"
"biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine"	"FunCat"	"10"	"0.000770352087978544"	"1"	"0.0887892393103055"
"C-compound and carbohydrate utilization "	"FunCat"	"10"	"6.35905620233722e-17"	"1"	"0.000213262671614635"
"cation transport (Na, K, Ca , NH4, etc.) "	"FunCat"	"10"	"2.00947670093649e-13"	"1"	"0.000633761324059678"
"energy"	"FunCat"	"10"	"5.17411556422349e-15"	"1"	"0.000633761324059678"
"heavy metal ion transport (Cu, Fe, etc.)"	"FunCat"	"10"	"2.04862906305169e-15"	"1"	"0.000213262671614635"
"ion transport "	"FunCat"	"10"	"0"	"1"	"0"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"metabolism of the cysteine - aromatic group"	"FunCat"	"10"	"5.60812620680515e-07"	"1"	"0.00889928156762443"
"photosynthesis"	"FunCat"	"10"	"0.0182533367478033"	"1"	"0.136680803559673"
"transport "	"FunCat"	"10"	"5.17411556422349e-15"	"1"	"0.000633761324059678"
"transport facilitation"	"FunCat"	"10"	"0"	"1"	"0.000633761324059678"
"transported compounds (substrates)"	"FunCat"	"10"	"0"	"1"	"0"
"Alkaloid biosynthesis I"	"KEGG"	"10"	"3.01054729823628e-06"	"1"	"0.0271568403312096"
"Alkaloid biosynthesis II"	"KEGG"	"10"	"3.49135254481974e-10"	"1"	"0.00365586444682613"
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	"10"	"1.16505797455961e-05"	"1"	"0.0424999437792813"
"Nitrogen metabolism"	"KEGG"	"10"	"0.000599804806895342"	"1"	"0.0541399608019284"
"Starch and sucrose metabolism"	"KEGG"	"10"	"0.0285174733952749"	"1"	"0.221758077346006"
"Tyrosine metabolism"	"KEGG"	"10"	"0.000209831787596770"	"1"	"0.0802676851782224"
"Phenylpropanoid pathway"	"LitPath"	"10"	"0.0261131034560003"	"1"	"0.416137912191018"