"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN THREE DATA SETS" "sum.of.scores" "sum.of.genes" "Cell Wall Carbohydrate Metabolism" "BioPath" 351.5 106 "pectin metabolism" "BioPath" 166.5 72 "Flavonoid and anthocyanin metabolism" "BioPath" 67 15 "proanthocyanidin biosynthesis" "TAIR-GO" 46 5 "proanthocyanidin biosynthesis" "TAIR-GO" 46 5 "flavonoid biosynthesis" "TAIR-GO" 26 5 "ORGAN DATA SET" "quantDE" 0 "maxDE" 0 "ORGAN DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" 26 0.000185617600290921 7 0.0278839809147571 "Phenylpropanoid Metabolism" "BioPath" 24 0.00000103022107205803 5 0.0109644843070079 "Flavonoid and anthocyanin metabolism" "BioPath" 20 4.29571784131868E-017 3 0.0030410411377319 "Gibberellin metabolism" "LitPath" 14 0.0000000013848387712051 3 0.000232262207341148 "giberelin biosynthesis" "LitPath" 14 0.00000000000762346476847109 3 0.0000732113208057403 "Stilbene, coumarine and lignin biosynthesis" "KEGG" 12 0.00000000285292237594839 2 0.0132829751150422 "Biosynthesis of prenyl diphosphates" "BioPath" 10 0.000123000857867766 1 0.0873316017820307 "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" 10 0.00251236693513774 1 0.158354112405542 "pectin metabolism" "BioPath" 10 0.00135967087332123 4 0.0238517301985789 "trehalose metabolism" "BioPath" 10 0.000000000000250850913543703 2 0.000346353840751022 "dolichol biosynthesis" "TAIR-GO" 10 1.34792909740237E-024 1 0.0000233363123655411 "proanthocyanidin biosynthesis" "TAIR-GO" 10 3.21957226969378E-022 1 0.0000233363123655411 "anthocyanin biosynthesis" "AraCyc" 10 6.59847830767172E-015 1 0.00140834039599093 "trehalose biosynthesis I" "AraCyc" 10 0.00000277127081661271 2 0.00688759528732089 "trehalose biosynthesis II" "AraCyc" 10 0.000000104535271993741 2 0.00261784780940418 "trehalose biosynthesis III" "AraCyc" 10 0.00000000056779925622461 2 0.000563955602150998 "energy" "FunCat" 10 6.55858050023862E-020 2 0.000000725346776204591 "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" 10 0 2 0 "Ascorbate and aldarate metabolism" "KEGG" 10 0.000000000144260087807641 1 0.00700908750483925 "Fluorene degradation" "KEGG" 10 0.000000000000681535082092387 1 0.00252986498628408 "gamma-Hexachlorocyclohexane degradation" "KEGG" 10 0.0000000000034626209207426 1 0.00325665095274107 "flavonoid, anthocyanin, and proanthocyanidin biosynthesis" "LitPath" 10 0.000000139273506215583 1 0.019541092976241 "polyprenyl diphosphate biosynthesis" "LitPath" 10 0.00000000000611631634360552 1 0.0103082776677287 "proanthocyanidin biosynthesis" "LitPath" 10 0.000000139273506215583 1 0.019541092976241 "IAA conjugate biosynthesis II" "AraCyc" 9 0 1 0 "flavonoid biosynthesis" "TAIR-GO" 8 0.0000000000000645145267380572 1 0.000162466979017529 "mRNA synthesis " "FunCat" 8 0.000000231333048231083 1 0.0254239965044784 "RNA synthesis " "FunCat" 8 0.000000231333048231083 1 0.0254239965044784 "transcription" "FunCat" 8 0.000000000225210224547497 1 0.00710251221540552 "transcriptional control" "FunCat" 8 0.00000000271599267039362 1 0.00521103097176477 "Miscellaneous acyl lipid metabolism" "AcylLipid" 8 0 4 0 "STRESS DATA SET" "quantDE" 0 "maxDE" 0.3561792 "STRESS DATA SET" "HORMONE DATA SET" "quantDE" 0 "maxDE" 0.9445452 "HORMONE DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" 96 4.84761917343278E-026 33 0.00000000685516926025094 "pectin metabolism" "BioPath" 64 5.32569700860373E-038 26 0.00000000000061073708004837 "Ribosome" "KEGG" 36 0.0265756426737681 6 0.487526525540558 "Intermediary Carbon Metabolism" "BioPath" 26 0.0106535387687123 6 0.360014801678532 "nucleotide metabolism" "FunCat" 22 0 5 0 "mono-/sesqui-/di-terpene biosynthesis" "LitPath" 22 0.0000000750325468468371 4 0.0154200537830681 "terpenoid metabolism" "LitPath" 22 0.0000000834790101564221 4 0.0176197371870551 "(deoxy)ribose phosphate degradation" "AraCyc" 20 1.39988128268047E-022 4 0.00000127447955048052 "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" 20 0.000000000000864581259335866 2 0.0161087940059506 "pyrimidine nucleotide metabolism" "FunCat" 20 6.10955759045837E-016 4 0.000272174436850541 "Nucleotide Metabolism" "KEGG" 20 0.00000905746788774788 4 0.0460815584387754 "Pyrimidine metabolism" "KEGG" 20 0.0000000000569529822642304 4 0.00340496362201484 "Miscellaneous acyl lipid metabolism" "AcylLipid" 20 0.00222765575560216 8 0.0592716104865411 "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" 19 0.000000417782921064675 6 0.00445260120491433 "Flavonoid and anthocyanin metabolism" "BioPath" 18 0.0000000307559189138656 4 0.0502909148230535 "biogenesis of cell wall" "FunCat" 16 0.00185725698983009 6 0.00845249104801169 "Glycolysis / Gluconeogenesis" "KEGG" 16 0.00292015084865823 4 0.0483037254932924 "gibberellin biosynthesis" "AraCyc" 14 0.0000000000276729401250266 2 0.00155063035032126 "C-compound, carbohydrate catabolism" "FunCat" 14 0.0000163113349295516 3 0.062476880051458 "plant / fungal specific systemic sensing and response " "FunCat" 14 0.00000121891800304434 2 0.0308281872077177 "plant hormonal regulation" "FunCat" 14 0.00000121891800304434 2 0.0308281872077177 "transport " "FunCat" 14 2.48698430873319E-021 4 0 "transport facilitation" "FunCat" 14 0 4 0 "Ligand-Receptor Interaction" "KEGG" 14 0.000000161550251796367 6 0.000291308136346454 "Starch and sucrose metabolism" "KEGG" 14 0.0198461369971883 5 0.0124658528944739 "Nitrogen metabolism" "KEGG" 13 0.000431626827556514 2 0.048814059530345 "abscisic acid biosynthesis" "AraCyc" 12 1.46342893334994E-015 2 0.0000781279476669904 "acetate fermentation" "AraCyc" 12 0.00179161801703638 3 0.048079542070833 "fructose degradation (anaerobic)" "AraCyc" 12 0.00106003074149273 3 0.0379155030220382 "glycerol degradation II" "AraCyc" 12 0.0000698676252705826 3 0.0124596576289229 "glycolysis IV" "AraCyc" 12 0.00113481827319392 3 0.0398382409725634 "mixed acid fermentation" "AraCyc" 12 0.00000862212426634584 3 0.00510181039171128 "non-phosphorylated glucose degradation" "AraCyc" 12 0.0000000280598266662533 3 0.00366887748508046 "sorbitol fermentation" "AraCyc" 12 0.00190702699573427 3 0.0438488216389086 "TCA cycle -- aerobic respiration" "AraCyc" 12 0.000198636477310324 2 0.0689460853699098 "TCA cycle variation IV" "AraCyc" 12 0.000158677899897088 2 0.0620755807674414 "TCA cycle variation VII" "AraCyc" 12 0.0103253637283466 2 0.168573486822826 "TCA cycle variation VIII" "AraCyc" 12 0.000456461641298419 2 0.0761475721177074 "Carbon fixation" "KEGG" 12 0.0238012901925353 3 0.0869275067164483 "Citrate cycle (TCA cycle)" "KEGG" 12 0.000467956871129982 2 0.0889636084849014 "Ion channels" "KEGG" 12 0.00000397454281250209 5 0.00148789177921539 "Purine metabolism" "KEGG" 12 0.00838123745572219 3 0.0689326477470474 "abscisic acid biosynthesis" "LitPath" 12 0.0000000151027587692028 2 0.00541794307096234 "Carotenoid and abscisic acid metabolism" "LitPath" 12 0.00397869845058315 2 0.0822139033584262 "flavonoid biosynthesis" "AraCyc" 11 0.00000223931214231376 3 0.00193364399098313 "C-compound, carbohydrate anabolism" "FunCat" 11 0.00000409110694737868 3 0.00444095232928936 "cellulose biosynthesis" "BioPath" 10 0.0143513610267634 3 0.0823394361602368 "gibberellic acid biosynthesis" "TAIR-GO" 10 0.00000000525475063189499 1 0.00620540432521812 "gibberellic acid mediated signaling" "TAIR-GO" 10 0.00000000000213408301784368 1 0.00117527101360827 "glucosinolate biosynthesis" "TAIR-GO" 10 0.000000000462012922379162 1 0.00322421676476631 "monoterpenoid biosynthesis" "TAIR-GO" 10 0.000000000000105295555728691 1 0.000709985386030034 "oxygen binding" "TAIR-GO" 10 1.24326547399093E-017 1 0.000119956192621604 "response to wounding" "TAIR-GO" 10 0.00000175983546028991 1 0.0241908783187665 "glucosinolate biosynthesis from phenylalanine" "AraCyc" 10 0.0000000000774515034030654 1 0.00237523467199712 "monoterpene biosynthesis" "AraCyc" 10 0.00000000000138280556831385 1 0.00120347524445839 "Diterpenoid biosynthesis" "KEGG" 10 0.0000229266681115688 1 0.0371348078380798 "Fructose and mannose metabolism" "KEGG" 10 0.0137477513846174 2 0.115699438099633 "Galactose metabolism" "KEGG" 10 0.00106211935493206 2 0.0450612468775851 "diterpene biosynthesis" "LitPath" 10 0.000000000014929684750068 1 0.00243721245454664 "Gibberellin metabolism" "LitPath" 10 0.009668388877025 1 0.20727498491185 "monoterpene biosynthesis" "LitPath" 10 0.00000102377688183031 1 0.0221464166036944 "gibberellic acid catabolism" "TAIR-GO" 9 0.00000000003186882361126 1 0.00117527101360827 "proanthocyanidin biosynthesis" "TAIR-GO" 8 0.00000000000240160853156951 1 0.00035742174068742 "biosynthesis of proto- and siroheme" "AraCyc" 8 0.0120252119169954 2 0.0493698516326678 "cellulose biosynthesis" "AraCyc" 8 0.0155322214158988 2 0.0587678525582068 "transport ATPases" "FunCat" 8 0.0315420827679407 2 0.112114710960657 "ATP synthesis" "KEGG" 8 0.0142760213602418 2 0.0839701359058463 "Flavonoid biosynthesis" "KEGG" 8 0.0000686371651883104 2 0.00742420583990335 "flavonoid biosynthesis" "TAIR-GO" 7 0.000000100830321490644 1 0.00243467688870357 "iron-sulfur cluster assembly" "TAIR-GO" 7 0 1 0 "pentacyclic triterpenoid biosynthesis" "TAIR-GO" 7 0.00000028765540625665 1 0.00322421676476631 "C-compound and carbohydrate utilization " "FunCat" 7 0.000000000827737077515057 2 0 "triterpene biosynthesis" "LitPath" 7 0.0034633582085313 1 0.0851282632557043 "MUTANT DATA SET" "quantDE" 0 "maxDE" 10.226626353 "HORMONE DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" 229.5 2.53426730415769E-021 66 0.000000253056248723955 "C-compound and carbohydrate metabolism" "FunCat" 123 0.000160536239992006 31 0.0268104135984019 "Phenylpropanoid Metabolism" "BioPath" 97 0.0350426103151527 19 0.46511542171289 "pectin metabolism" "BioPath" 92.5 6.61748168959088E-018 42 0.000000000857602484947956 "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" 58 0.000874021672521217 10 0.087187188682497 "mono-/sesqui-/di-terpene biosynthesis" "LitPath" 58 0.0000000000000178078317981204 10 0.00318718901068668 "terpenoid metabolism" "LitPath" 58 0.0000000000000237467952371141 10 0.0042489410448423 "glycolysis and gluconeogenesis" "FunCat" 56 0.0192403129677789 13 0.131568811174532 "Nucleotide Metabolism" "KEGG" 53 0.0000000095491844810617 10 0.038713803446411 "Starch and sucrose metabolism" "KEGG" 51 0.00000922719987267859 12 0.0060230117691266 "Purine metabolism" "KEGG" 43 0.00000112343662180964 8 0.0481727205347953 "Pyruvate metabolism" "KEGG" 43 0.000811325597444129 8 0.120719658715224 "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" 42 0.00199121662428168 5 0.592240983496664 "cellulose biosynthesis" "BioPath" 42 0.0000045219654237284 8 0.0574600114278512 "Biosynthesis of prenyl diphosphates" "BioPath" 40 0.00496386824468356 7 0.111378398623949 "transport " "FunCat" 40 0 11 0 "biogenesis of cell wall" "FunCat" 38 0.0000496257763485585 13 0.000867768162845111 "trans-zeatin biosynthesis" "AraCyc" 36 2.58146595376946E-036 7 0.00000000323744772252806 "transport facilitation" "FunCat" 36 0 10 0 "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" 36 0.0000221468373883631 4 0.261349192493577 "Translation factors" "KEGG" 36 0.000747416997328646 12 0.0185944711687835 "acetate fermentation" "AraCyc" 34 0.00338129899064142 9 0.0701321789006209 "nucleotide metabolism" "FunCat" 34 0 7 0 "brassinosteroid biosynthesis" "LitPath" 33 0.00202046812845533 4 0.195436269087242 "fructose degradation (anaerobic)" "AraCyc" 32 0.00435415544911704 9 0.0453367680411006 "glycolysis IV" "AraCyc" 32 0.00488535922135644 9 0.0497334981276935 "sorbitol fermentation" "AraCyc" 32 0.0114320496725691 9 0.0593619710811098 "Pyrimidine metabolism" "KEGG" 32 0.0000000654104818211112 7 0.0125977000931351 "lactose degradation IV" "AraCyc" 31 0 8 0 "aromatic amino acid family biosynthesis" "TAIR-GO" 30 3.76145264013858E-017 3 0.00302665477253089 "Flavonoid and anthocyanin metabolism" "BioPath" 29 0.0012919087855112 8 0.155199154196052 "intracellular signalling" "FunCat" 28.5 0.000343503339861363 7 0.098513838719552 "triacylglycerol degradation" "AraCyc" 28 0.0000000511456651739694 13 0.000123124721545114 "C-compound, carbohydrate catabolism" "FunCat" 28 0.000000858911414144303 7 0.0219328974853844 "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" 28 0.0117498717762197 6 0.195816967631064 "prenyl diphosphate (GPP,FPP, GGPP) biosynthesis" "LitPath" 28 0.000124292432720271 4 0.0599196818188745 "lipases pathway" "AraCyc" 27 0.00000190229240732623 5 0.0221291578595931 "dTDP-rhamnose biosynthesis" "AraCyc" 26 0.000313351942830386 5 0.170316624761338 "Citrate cycle (TCA cycle)" "KEGG" 26 0.00154830505552501 4 0.230375765666352 "Fructose and mannose metabolism" "KEGG" 26 0.0123945788166052 4 0.309405638511631 "Nitrogen metabolism" "KEGG" 26 0.00755567300510227 3 0.253519898761862 "UDP-N-acetylglucosamine biosynthesis" "AraCyc" 25 2.44536232682792E-017 4 0.0000911522410363223 "Cyanoamino acid metabolism" "KEGG" 25 0.000000015357070068467 6 0.00274615502962108 "sterol biosynthesis" "BioPath" 24 0.0410440949398238 3 0.331292955453999 "alanine biosynthesis II" "AraCyc" 24 0.00000127200945969816 4 0.061978439851855 "phenylalanine biosynthesis II" "AraCyc" 24 0.0000000280529899798004 4 0.0380758731533656 "TCA cycle -- aerobic respiration" "AraCyc" 24 0.0363463305740793 6 0.112567643182187 "TCA cycle variation IV" "AraCyc" 24 0.0286493394580689 6 0.0941001671275569 "sterol and brassinosteroid biosynthesis" "LitPath" 24 0.0100729952528285 3 0.175949136180352 "gibberellin biosynthesis" "AraCyc" 23 0.0000000148232184251968 5 0.000254548351740635 "lipid, fatty acid and isoprenoid degradation" "FunCat" 23 0.0000164347278447367 3 0.201586424006717 "transcription" "FunCat" 23 0.000000000000100136616439651 5 0.000661959477306588 "aspartate/ornithin cycle / nitric oxid from glutamate" "BioPath" 22 0.00000000149146834636427 3 0.0622807333411638 "de novo biosynthesis of purine nucleotides II" "AraCyc" 22 0.000039869824219415 5 0.0805747822535063 "sucrose degradation III" "AraCyc" 22 0.0000000338210207924948 5 0.00162835680039306 "degradation " "FunCat" 22 0.00000827041001473181 4 0.068485567038762 "starch metabolism" "BioPath" 21 0.0497289698832151 3 0.437741251039413 "RNA synthesis " "FunCat" 21 0.0000403956451786337 4 0.0783720619872838 "ascorbic acid biosynthesis" "BioPath" 20 0.00218642388591786 3 0.202147285322432 "Chloroplastic protein import via envelope membrane" "BioPath" 20 0.0000367349397219514 5 0.014357223334846 "GDP-carbohydrate biosynthesis" "BioPath" 20 0.0000000137549398710421 3 0.0187089000059342 "hemicellulose biosynthesis" "BioPath" 20 0.000368001860910169 2 0.263163417140736 "aromatic amino acid family biosynthesis, shikimate pathway" "TAIR-GO" 20 0.000000000240352506678541 2 0.0156382661791999 "(deoxy)ribose phosphate degradation" "AraCyc" 20 0.000000000534953247008289 4 0.00148999242755377 "mixed acid fermentation" "AraCyc" 20 0.0150034165390266 5 0.0805747822535063 "sucrose biosynthesis" "AraCyc" 20 0.0000901579829337125 4 0.0258927571652111 "tryptophan biosynthesis" "AraCyc" 20 0.00246333750665632 4 0.0714663641357269 "tyrosine biosynthesis I" "AraCyc" 20 0.0000000000285763283483413 2 0.0376262017074731 "pyrimidine nucleotide metabolism" "FunCat" 20 0.0000000470662705425996 4 0.0121991271886148 "brassinosteroid biosynthesis" "TAIR-GO" 19 0.0000000318999775089825 2 0.0156382661791999 "steroid biosynthesis" "TAIR-GO" 19 0.0000000318999775089825 2 0.0156382661791999 "Phosphatidylinositol signaling system" "KEGG" 19 0.0115024000758166 4 0.132998021848739 "Protein export" "KEGG" 19 0.000542800832314522 5 0.0251417879867324 "Signal Transduction" "KEGG" 19 0.0171165522835621 4 0.145595027455446 "proanthocyanidin biosynthesis" "TAIR-GO" 18 6.68596902842264E-021 2 0.000096511043667328 "abscisic acid biosynthesis" "AraCyc" 18 0.0000000000000155225665048068 3 0.000270392759614838 "ascorbate glutathione cycle" "AraCyc" 18 0.000100652028010116 3 0.0453010067604576 "non-phosphorylated glucose degradation" "AraCyc" 18 0.000204421993508763 5 0.0559803322176001 "trehalose biosynthesis III" "AraCyc" 18 0.0130038065365613 5 0.0559803322176001 "Terpenoid biosynthesis" "KEGG" 18 0.00271496071515866 3 0.094849352866622 "abscisic acid biosynthesis" "LitPath" 18 0.00000187578157915031 3 0.0207512239614941 "galactose degradation I" "AraCyc" 17 0.0000000000000527912427740103 4 0.0000911522410363223 "peptidoglycan biosynthesis" "AraCyc" 17 0.0000000000108112496160598 4 0.000225620240135721 "plant / fungal specific systemic sensing and response " "FunCat" 17 0.00275019520646322 3 0.0757312440516867 "plant hormonal regulation" "FunCat" 17 0.00275019520646322 3 0.0757312440516867 "cytokinin biosynthesis" "TAIR-GO" 16 1.09545660040292E-015 2 0.000373044727971263 "tryptophan biosynthesis" "TAIR-GO" 16 0.000069325654891362 2 0.0408870529710997 "biosynthesis of pyrimidine ribonucleotides" "AraCyc" 16 0.000782013788061267 3 0.136690285290916 "de novo biosynthesis of pyrimidine ribonucleotides" "AraCyc" 16 0.000605998659796626 3 0.12079339954461 "Ascorbate and aldarate metabolism" "KEGG" 16 0.0470899621929442 2 0.325928646100992 "DNA polymerase" "KEGG" 16 0.00000000650803353395397 4 0.0067716210392475 "Ligand-Receptor Interaction" "KEGG" 16 0.0139963970520774 8 0.0186609695830597 "Prolin/Hydroxyproline from glutamate" "BioPath" 14 0.000039875908062938 3 0.0187089000059342 "jasmonic acid biosynthesis" "TAIR-GO" 14 0.000974118004112077 2 0.0545201026978258 "jasmonic acid biosynthesis" "AraCyc" 14 0.0485808580924123 2 0.20528617113139 "C-compound and carbohydrate utilization " "FunCat" 14 0 4 0 "detoxification" "FunCat" 14 0 5 0 "purine nucleotide metabolism" "FunCat" 14 0.016458983031492 3 0.10222764621407 "Folate biosynthesis" "KEGG" 14 0.000151493604427064 3 0.0343982481938404 "Ion channels" "KEGG" 14 0.0429422719429664 7 0.0394337946857867 "brassinosteroid modulation" "LitPath" 14 0.000000983523010040444 6 0.00112357728890743 "gibberellic acid biosynthesis" "TAIR-GO" 13 0.000121219267150859 2 0.0121306540259501 "cell growth / morphogenesis " "FunCat" 13 0.00000000158174665897472 2 0.00563967707876393 "second messenger mediated signal transduction" "FunCat" 13 0.00000000000743574703685597 2 0.002410242896288 "tRNA synthesis " "FunCat" 13 0.0000000362908253305885 2 0.0173071542368711 "Basal transcription factors" "KEGG" 13 0.0203999504629516 4 0.145595027455446 "Tic apparatus" "BioPath" 12 0.000000731354483861829 3 0.00748091017683039 "trehalose metabolism" "BioPath" 12 0.000114094605501763 3 0.0486323507205788 "abscisic acid biosynthesis" "TAIR-GO" 12 0.0000116298750290244 2 0.00912530237220972 "anthocyanin biosynthesis" "AraCyc" 12 0.000119686456019506 2 0.0648548755766605 "folate biosynthesis" "AraCyc" 12 0.000459788066205523 3 0.0286282014377689 "mannitol degradation" "AraCyc" 12 0.035296596007259 3 0.170787929905045 "sorbitol degradation" "AraCyc" 12 0.0466911231167092 3 0.188846396408557 "energy" "FunCat" 12 0.00000000000878030639906348 3 0 "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" 12 0 3 0 "nitrogen and sulfur utilization " "FunCat" 12 0.00590650083438763 2 0.0629643013081533 "Aminosugars metabolism" "KEGG" 12 0.00235642303823477 3 0.0825880469790404 "response to UV" "TAIR-GO" 11 0.00243868923112174 2 0.0196575474348664 "histidine biosynthesis" "AraCyc" 11 0.0272597713194018 2 0.159746923109422 "histidine biosynthesis I" "AraCyc" 11 0.011865362691526 2 0.138288313793991 "starch biosynthesis" "AraCyc" 11 0 2 0 "Ferredoxin" "BioPath" 10 0.000797809548188652 2 0.069977617460677 "Lysin from aspartate" "BioPath" 10 0.00000779886180427057 1 0.099453479434801 "SRP (signal recognition particle)-dependent pathway for integral membrane proteins" "BioPath" 10 0.00612874306747625 1 0.138437962289222 "Thylakoid biogenesis and photosystem assembly" "BioPath" 10 0.0252323147962665 1 0.180003730629695 "acyl-CoA binding" "TAIR-GO" 10 0.0000000000619749308048502 1 0.00212649614192843 "anther dehiscence" "TAIR-GO" 10 0 1 0 "anthranilate synthase complex" "TAIR-GO" 10 0.000000000132256168379918 1 0.00212649614192843 "aromatic amino acid family biosynthesis, anthranilate pathway" "TAIR-GO" 10 0 1 0 "glucosinolate biosynthesis" "TAIR-GO" 10 0.000741776746448079 1 0.04960067628774 "lipid transport" "TAIR-GO" 10 0.00000712176032814626 1 0.0383397554830623 "monoterpenoid biosynthesis" "TAIR-GO" 10 0.000000612606429189258 1 0.01199988794893 "oxygen binding" "TAIR-GO" 10 0.000000000132256168379918 1 0.00212649614192843 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" "TAIR-GO" 10 0.0000000000040445330571664 1 0.00212649614192843 "pollen maturation" "TAIR-GO" 10 0 1 0 "porphyrin biosynthesis" "TAIR-GO" 10 0.00198078780976766 2 0.0196575474348664 "response to biotic stimulus" "TAIR-GO" 10 0 1 0 "response to hypoxia" "TAIR-GO" 10 0.0000000000040445330571664 1 0.00212649614192843 "unidimensional cell growth" "TAIR-GO" 10 0.00703915002803339 1 0.119035200217974 "glucosinolate biosynthesis from phenylalanine" "AraCyc" 10 0.000158312492907079 1 0.0408073067946373 "lysine biosynthesis I" "AraCyc" 10 0.0462595974101031 1 0.446682601189308 "methylglyoxal degradation" "AraCyc" 10 0.00206656870081458 2 0.117913568138282 "monoterpene biosynthesis" "AraCyc" 10 0.00000522347334916593 1 0.0216528706319147 "plant monoterpene biosynthesis" "AraCyc" 10 0.0000000235221427968497 1 0.00766308474700465 "threonine degradation" "AraCyc" 10 0.0160213439884734 2 0.277906856798087 "biosynthesis of derivatives of dehydroquinic acid, shikimic acid and chorismic acid" "FunCat" 10 0.0000000000190636092658764 1 0.0399102398211579 "biosynthesis of lysine" "FunCat" 10 0.000000167471559434679 1 0.0627572816494204 "biosynthesis of vitamins, cofactors, and prosthetic groups" "FunCat" 10 0.0246699734481789 2 0.114764766801019 "metabolism of the aspartate family" "FunCat" 10 0.00011617915043868 1 0.147986525904064 "Lysine biosynthesis" "KEGG" 10 0.00221541110915398 1 0.250451916811506 "Membrane Transport" "KEGG" 10 0.0296256974233207 4 0.0274121704849228 "Phe/Tyr biosynthesis" "LitPath" 10 0 1 0 "sequiterpene biosynthesis" "LitPath" 10 0.00000396920133150222 1 0.02237804162811 "Tyr biosynthesis" "LitPath" 10 0 1 0 "cellular response to sulfate starvation" "TAIR-GO" 9 0.00000000167867496418322 1 0.00212649614192843 "glucosinolate catabolism" "TAIR-GO" 9 0.00000000167867496418322 1 0.00212649614192843 "histidine biosynthesis" "TAIR-GO" 9 0.0000000466805190982872 1 0.00618646633845063 "methylglyoxal catabolism" "TAIR-GO" 9 0.000000000827780209773552 1 0.00212649614192843 "pollen germination" "TAIR-GO" 9 0.000000111189961042484 1 0.00618646633845063 "IAA biosynthesis I" "AraCyc" 9 0.0291185429603661 1 0.183215579752061 "Thiamine metabolism" "KEGG" 9 0.000128917174960388 1 0.130695878966892 "Sequestration of phenylpropanoids (cytosol --> vacuole)" "BioPath" 8 0.00000132987513963866 1 0.012504459172753 "chloroplast organization and biogenesis" "TAIR-GO" 8 0.00000194465878377355 2 0.00174207237964787 "fatty acid elongation" "TAIR-GO" 8 0.000127425214309402 1 0.0383397554830623 "maintenance of dormancy" "TAIR-GO" 8 0 1 0 "very-long-chain fatty acid metabolism" "TAIR-GO" 8 0.0164863006697506 1 0.151087765708182 "wax biosynthesis" "TAIR-GO" 8 0.000617291037487678 1 0.0383397554830623 "ureide biosynthesis" "AraCyc" 8 0.00040065576735083 2 0.0376262017074731 "amino acid detoxification" "FunCat" 8 0 1 0 "general transcription activities" "FunCat" 8 0.0166493195166461 2 0.114764766801019 "protein folding and stabilization " "FunCat" 8 0.00000144044741872401 2 0.00563967707876393 "sugar, glucoside, polyol and carboxylate catabolism " "FunCat" 8 0.0339132926157551 2 0.134704592833701 "transported compounds (substrates)" "FunCat" 8 0 2 0 "calcium-mediated signaling" "TAIR-GO" 7 0.000000406100651264491 1 0.00618646633845063 "histone acetylation" "TAIR-GO" 7 0 1 0 "iron-sulfur cluster assembly" "TAIR-GO" 7 0 1 0 "photoreactive repair" "TAIR-GO" 7 0.0000000326233624875695 1 0.00212649614192843 "polysaccharide biosynthesis" "TAIR-GO" 7 0 1 0 "secondary metabolism" "TAIR-GO" 7 0 1 0 "transcription factor TFIID complex" "TAIR-GO" 7 0 1 0 "mannosyl-chito-dolichol biosynthesis" "AraCyc" 7 0.00000903324151712482 1 0.0216528706319147 "cytoskeleton" "FunCat" 7 0 1 0 "directional cell growth (morphogenesis)" "FunCat" 7 0.000000101484991972952 1 0.0211602413587229 "RNA modification " "FunCat" 7 0.00000151531276056957 1 0.00748273808665264 "tRNA modification " "FunCat" 7 0 1 0