"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN ALL DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"C-compound and carbohydrate metabolism"	"FunCat"	"208"	"32"	""	""
"chlorophyll biosynthesis"	"TAIR-GO"	"189"	"23"	""	""
"chlorophyll biosynthesis"	"AraCyc"	"188"	"24"	""	""
"chlorophyll biosynthesis"	"LitPath"	"183"	"22"	""	""
"photosynthesis"	"FunCat"	"114"	"16"	""	""
"ORGAN DATA SET"	"quantDE"	"4.130723"	"maxDE"	"4.9977887"	"ORGAN DATA SET"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"45"	"9.25341754980214e-08"	"7"	"0.00218485758868645"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	"44"	"5.34722301806211e-17"	"11"	"0.00038973657131004"
"C-compound and carbohydrate metabolism"	"FunCat"	"42"	"0.00089870707454605"	"6"	"0.0800899707527307"
"Photosystems "	"BioPath"	"38"	"0.000150274382392128"	"5"	"0.0806555123974569"
"Gluconeogenesis from lipids in seeds"	"BioPath"	"32"	"8.94824231696199e-08"	"4"	"0.0433645444172131"
"additional photosystem II components"	"BioPath"	"26"	"9.93129564473345e-08"	"3"	"0.0239809397755182"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"23"	"2.85054762711211e-06"	"4"	"0.0021447404989402"
"Flavonoid and anthocyanin metabolism"	"BioPath"	"23"	"9.70800377379187e-09"	"4"	"0.0192709866701597"
"flavonoid biosynthesis"	"AraCyc"	"22"	"1.09335523985385e-16"	"3"	"0.00079885342695387"
"Pentose phosphate pathway"	"KEGG"	"22"	"3.13658251040147e-16"	"3"	"0.000736054395040279"
"Flavonoid biosynthesis"	"KEGG"	"21"	"6.17039257827297e-23"	"3"	"1.59219721976854e-05"
"flavonoid biosynthesis"	"TAIR-GO"	"20"	"7.78359157435075e-19"	"2"	"0.000569740154083131"
"pentose-phosphate shunt"	"TAIR-GO"	"20"	"1.17903712166337e-15"	"2"	"0.00325950023520255"
"fatty acid oxidation pathway"	"AraCyc"	"20"	"1.28592982338252e-13"	"2"	"0.00316871579850719"
"octane oxidation"	"AraCyc"	"20"	"1.02677545805297e-16"	"2"	"0.000435034598956292"
"biosynthesis of phenylpropanoids"	"FunCat"	"20"	"9.70272524548898e-11"	"2"	"0.0123239457654968"
"biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine"	"FunCat"	"20"	"9.70272524548898e-11"	"2"	"0.0123239457654968"
"energy"	"FunCat"	"20"	"0"	"2"	"2.81682286654164e-06"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"20"	"0"	"2"	"0"
"pentose-phosphate pathway "	"FunCat"	"20"	"4.00328106490223e-14"	"2"	"0.00312178723339051"
"flavonoid, anthocyanin, and proanthocyanidin biosynthesis"	"LitPath"	"20"	"1.69033075877816e-15"	"2"	"0.00190565916998297"
"proanthocyanidin biosynthesis"	"LitPath"	"20"	"1.69033075877816e-15"	"2"	"0.00190565916998297"
"secondary metabolism"	"FunCat"	"19"	"3.67704368692032e-07"	"2"	"0.0543989163957516"
"glycolysis and gluconeogenesis"	"FunCat"	"18"	"0.0477095509115722"	"3"	"0.0864524482380145"
"Photosynthesis"	"KEGG"	"18"	"1.12958492591544e-12"	"2"	"0.00442969750178434"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"17"	"5.5755974028951e-19"	"2"	"6.89106408635897e-05"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"17"	"3.86908312047907e-11"	"3"	"0.000141499730889553"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"17"	"0.000107577221952738"	"3"	"0.00704722163911669"
"Chlorophyll a/b binding proteins"	"BioPath"	"16"	"4.49676341858438e-06"	"2"	"0.0157521657278915"
"photosystem II type II  chlorophyll a /b binding protein"	"BioPath"	"16"	"4.46389719032448e-18"	"2"	"8.86885005628525e-05"
"fatty acid biosynthesis"	"TAIR-GO"	"16"	"4.59248677997065e-08"	"2"	"0.00637240734215027"
"photosynthesis"	"FunCat"	"16"	"4.5479952554524e-05"	"2"	"0.0246798126075165"
"chlorophyll biosynthesis"	"TAIR-GO"	"15"	"8.68961376247088e-07"	"2"	"0.0051943486263626"
"acetate fermentation"	"AraCyc"	"14"	"0.000325438716310132"	"3"	"0.0227320732006446"
"chlorophyll biosynthesis"	"AraCyc"	"14"	"0.000173225433314545"	"3"	"0.00913721170425074"
"photosystem I"	"TAIR-GO"	"12"	"3.23211338678804e-10"	"2"	"0.000569740154083131"
"Calvin cycle"	"AraCyc"	"12"	"3.44088165979695e-05"	"2"	"0.0222325428972431"
"fructose degradation (anaerobic)"	"AraCyc"	"12"	"0.00172081414605108"	"2"	"0.0791273698684142"
"glycolysis IV"	"AraCyc"	"12"	"0.00183893502192443"	"2"	"0.0821043479211003"
"mannitol degradation"	"AraCyc"	"12"	"3.65491087921724e-08"	"2"	"0.00702377449535425"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"12"	"1.81095017833395e-11"	"2"	"0.00100173692920439"
"sorbitol degradation"	"AraCyc"	"12"	"5.9774181330705e-08"	"2"	"0.00785008407803265"
"sorbitol fermentation"	"AraCyc"	"12"	"0.00304659233646914"	"2"	"0.0882025149115895"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"12"	"0.00226119629805016"	"2"	"0.0204685373076416"
"Fructose and mannose metabolism"	"KEGG"	"12"	"1.71813873092241e-05"	"2"	"0.0112404095224194"
"mRNA synthesis "	"FunCat"	"11"	"7.7642706661752e-06"	"2"	"0.00646279598690803"
"RNA synthesis "	"FunCat"	"11"	"7.7642706661752e-06"	"2"	"0.00646279598690803"
"transcription"	"FunCat"	"11"	"1.19554123549573e-09"	"2"	"0.000917022534057824"
"transcriptional control"	"FunCat"	"11"	"3.03961369501668e-08"	"2"	"0.000565585809627886"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"10"	"0.000224103066907601"	"1"	"0.0515437937294881"
"Plastocyanin"	"BioPath"	"10"	"2.37429390474840e-12"	"1"	"0.000810758682372058"
"Regulatory enzymes"	"BioPath"	"10"	"5.86326901010212e-10"	"1"	"0.00238699593957238"
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	"10"	"7.82635760222309e-07"	"1"	"0.0112834489373921"
"trehalose metabolism"	"BioPath"	"10"	"1.47889788692309e-07"	"1"	"0.0515437937294881"
"chalcone biosynthesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"1.93377973345051e-10"	"1"	"0.00203062540695103"
"cutin biosynthesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"embryonic development"	"TAIR-GO"	"10"	"0.0017249617826406"	"1"	"0.0883587695019469"
"enzyme binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glucose metabolism"	"TAIR-GO"	"10"	"1.12743453568668e-08"	"1"	"0.00654120080837004"
"pentose-phosphate shunt, oxidative branch"	"TAIR-GO"	"10"	"1.12743453568668e-08"	"1"	"0.00654120080837004"
"sugar mediated signaling"	"TAIR-GO"	"10"	"1.53162259428564e-07"	"1"	"0.00964591613792358"
"tetrapyrrole binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"trehalose metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"biosynthesis of proto- and siroheme"	"AraCyc"	"10"	"0.00190651719167851"	"3"	"0.00389740730580092"
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	"10"	"4.28011491841134e-10"	"1"	"0.00363971559311911"
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	"10"	"1.95607159537834e-13"	"1"	"0.00245178359673599"
"thiamine biosynthesis"	"AraCyc"	"10"	"3.86611960571064e-12"	"1"	"0.00363971559311911"
"trehalose biosynthesis I"	"AraCyc"	"10"	"0.0473339917162013"	"1"	"0.345247130240215"
"trehalose biosynthesis II"	"AraCyc"	"10"	"0.00522426576520713"	"1"	"0.214136408158233"
"trehalose biosynthesis III"	"AraCyc"	"10"	"8.50620601406719e-05"	"1"	"0.0922910237316394"
"biogenesis of cell wall"	"FunCat"	"10"	"0.0329104109923391"	"1"	"0.235835284970375"
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"Biosynthesis of steroids"	"KEGG"	"10"	"0.00377257163469576"	"1"	"0.0802676851782224"
"Carbon fixation"	"KEGG"	"10"	"0.00410609871259674"	"1"	"0.143116831234323"
"Fatty acid metabolism"	"KEGG"	"10"	"0.0001840138010633"	"1"	"0.0469635973766702"
"Glutathione metabolism"	"KEGG"	"10"	"0.000165077333556579"	"1"	"0.0684917197227076"
"Glycolysis / Gluconeogenesis"	"KEGG"	"10"	"0.0107846430155099"	"1"	"0.186836717607434"
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"10"	"0.00136049262322248"	"1"	"0.0860462267914784"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"10"	"4.9903583673074e-07"	"1"	"0.0191708223427874"
"adenine salvage"	"TAIR-GO"	"9"	"0"	"1"	"0"
"nucleotide metabolism"	"FunCat"	"9"	"0"	"1"	"0"
"purine nucleotide metabolism"	"FunCat"	"9"	"0.000135018324694225"	"1"	"0.0359885308505608"
"Nucleotide Metabolism"	"KEGG"	"9"	"0.0121208150067423"	"1"	"0.183115201973008"
"Purine metabolism"	"KEGG"	"9"	"0.00452338635014089"	"1"	"0.125662622095101"
"chlorophyll biosynthesis"	"LitPath"	"9"	"5.4589375124321e-05"	"1"	"0.0191708223427874"
"photosystem I reaction center"	"BioPath"	"8"	"5.61105882244373e-06"	"1"	"0.0256112581460749"
"calmodulin binding"	"TAIR-GO"	"8"	"0.000201121947924991"	"1"	"0.0445549732618511"
"electron transport"	"TAIR-GO"	"8"	"0.0119894203238364"	"1"	"0.096560614555022"
"photosynthetic electron transport"	"TAIR-GO"	"8"	"1.95431009179855e-06"	"1"	"0.00964591613792358"
"photosynthetic electron transport in photosystem I"	"TAIR-GO"	"8"	"1.09578271847428e-08"	"1"	"0.00203062540695103"
"photosystem I (sensu Viridiplantae)"	"TAIR-GO"	"8"	"0"	"1"	"0"
"porphyrin biosynthesis"	"TAIR-GO"	"8"	"0.000789277170548576"	"2"	"0.00415854271490238"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"8"	"0.00037985197617765"	"2"	"0.00401096268103352"
"auxin metabolism"	"TAIR-GO"	"7"	"2.24459244307005e-06"	"1"	"0.00654120080837004"
"gibberellic acid biosynthesis"	"TAIR-GO"	"7"	"0.00613258060499043"	"1"	"0.0324933648667752"
"photomorphogenesis"	"TAIR-GO"	"7"	"1.01454027142793e-08"	"1"	"0.00203062540695103"
"regulation of transcription"	"TAIR-GO"	"7"	"2.59241043737535e-12"	"1"	"0"
"regulation of transcription, DNA-dependent"	"TAIR-GO"	"7"	"0"	"1"	"0"
"signal sequence binding"	"TAIR-GO"	"7"	"0"	"1"	"0"
"chloroplast transport "	"FunCat"	"7"	"2.07372192024667e-05"	"1"	"0.00852697422388699"
"protein targeting, sorting and translocation"	"FunCat"	"7"	"5.41070788752532e-06"	"1"	"0.00688454335496184"
"transport "	"FunCat"	"7"	"1.28127061039056e-09"	"1"	"0.000606337498900218"
"transport routes "	"FunCat"	"7"	"0.000485514787801945"	"1"	"0.0269457730846634"
"Protein export"	"KEGG"	"7"	"0.00024081431747041"	"1"	"0.0350945653770748"
"STRESS DATA SET"	"quantDE"	"1.980893"	"maxDE"	"3.814483"	"STRESS DATA SET"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"77"	"2.16339190528166e-26"	"10"	"3.3148974010057e-05"
"C-compound and carbohydrate metabolism"	"FunCat"	"76"	"5.51018212070668e-14"	"13"	"0.00293553340457106"
"Intermediary Carbon Metabolism"	"BioPath"	"46"	"1.57234068450629e-05"	"6"	"0.209043526470115"
"Biosynthesis of steroids"	"KEGG"	"34"	"1.98850137032565e-16"	"4"	"0.000835955134336558"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"32"	"1.66371286805484e-15"	"4"	"0.00125765240829284"
"Photosystems "	"BioPath"	"30"	"0.0167990379849741"	"5"	"0.106946819112932"
"Glycolysis / Gluconeogenesis"	"KEGG"	"30"	"1.38228604979877e-11"	"4"	"0.00815457684451648"
"chlorophyll biosynthesis"	"TAIR-GO"	"29"	"2.98702685273395e-19"	"3"	"0.00030929458075564"
"chlorophyll biosynthesis"	"LitPath"	"29"	"3.25459792036283e-20"	"3"	"0.000293308251440443"
"Carotenoid biosynthesis"	"BioPath"	"28"	"7.10173240499474e-22"	"3"	"0.000237616830790924"
"carotenoid biosynthesis"	"AraCyc"	"28"	"5.72557076291084e-26"	"3"	"3.31570219471509e-05"
"glycolysis and gluconeogenesis"	"FunCat"	"28"	"0.000473592620491658"	"5"	"0.057359468696358"
"photosynthesis"	"FunCat"	"28"	"2.06311435015939e-11"	"4"	"0.00347780386921151"
"carotenid biosynthesis"	"LitPath"	"28"	"2.39259449943731e-18"	"3"	"0.000723358910134624"
"regulation of transcription"	"TAIR-GO"	"27"	"0"	"3"	"0"
"energy"	"FunCat"	"26"	"0"	"3"	"0"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"26"	"0"	"3"	"0"
"pentose-phosphate pathway "	"FunCat"	"26"	"6.51581480441276e-19"	"3"	"0.00129166358354672"
"Pentose phosphate pathway"	"KEGG"	"26"	"2.97566177997750e-16"	"3"	"0.00426462486630125"
"mRNA processing in chloroplast"	"BioPath"	"24"	"3.11371857751601e-23"	"5"	"5.79919882381118e-07"
"Transcriptional regulators (chloroplast)"	"BioPath"	"20"	"0"	"2"	"0"
"carotene biosynthesis"	"TAIR-GO"	"20"	"8.94182572806029e-28"	"2"	"1.5570782037944e-05"
"pentose-phosphate shunt"	"TAIR-GO"	"20"	"1.17903712166337e-15"	"2"	"0.00291095534791966"
"positive regulation of transcription"	"TAIR-GO"	"20"	"3.16117567256979e-27"	"2"	"1.5570782037944e-05"
"secondary metabolism"	"FunCat"	"20"	"1.33654161596273e-06"	"3"	"0.0526074895711971"
"Carbon fixation"	"KEGG"	"20"	"2.08330282458682e-06"	"3"	"0.0212718965750412"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"19"	"0.000203588250989971"	"2"	"0.0799844553270961"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"19"	"3.94326759443836e-06"	"2"	"0.0720627799002782"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"19"	"0.0112112667190659"	"2"	"0.161614381254897"
"additional photosystem II components"	"BioPath"	"18"	"0.00071949702892592"	"3"	"0.0307009556524853"
"Chlorophyll a/b binding proteins"	"BioPath"	"18"	"1.80452047496319e-07"	"2"	"0.0193113843680705"
"Gluconeogenesis from lipids in seeds"	"BioPath"	"18"	"0.0241681175793375"	"3"	"0.156825044869714"
"acetate fermentation"	"AraCyc"	"18"	"1.52145410329767e-05"	"3"	"0.0517932552941375"
"fructose degradation (anaerobic)"	"AraCyc"	"18"	"6.61828569672432e-06"	"3"	"0.0409203302190393"
"glycolysis I"	"AraCyc"	"18"	"0.0268965078910836"	"3"	"0.275128125461444"
"glycolysis IV"	"AraCyc"	"18"	"7.37252551478333e-06"	"3"	"0.0429793640586208"
"mannitol degradation"	"AraCyc"	"18"	"2.86930703841404e-13"	"3"	"0.00157422496515742"
"sorbitol degradation"	"AraCyc"	"18"	"6.18118573923158e-13"	"3"	"0.00183127649524673"
"sorbitol fermentation"	"AraCyc"	"18"	"1.68024098750944e-05"	"3"	"0.0472708802478182"
"sugar mediated signaling"	"TAIR-GO"	"16"	"2.54096601827571e-14"	"2"	"0.000294927110732644"
"Calvin cycle"	"AraCyc"	"16"	"3.77918183387342e-07"	"2"	"0.0433560023876893"
"Fructose and mannose metabolism"	"KEGG"	"16"	"5.04143750971014e-06"	"2"	"0.038963778770679"
"Transcription (chloroplast)"	"BioPath"	"14"	"1.76023574257471e-10"	"2"	"0.000912020830842764"
"transcription initiation"	"TAIR-GO"	"14"	"1.66437291093214e-10"	"2"	"0.000796443784952423"
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	"14"	"1.28820513237657e-14"	"2"	"0.000165619190754151"
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	"14"	"1.09292048583270e-19"	"2"	"8.40717578143492e-05"
"thiamine biosynthesis"	"AraCyc"	"14"	"1.14994705471665e-17"	"2"	"0.000165619190754151"
"Pyruvate metabolism"	"KEGG"	"14"	"0.00711028559574498"	"2"	"0.113847839445236"
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"14"	"0.00205911279992851"	"2"	"0.0489379463011016"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"14"	"7.00428377663375e-08"	"2"	"0.00495907788755636"
"starch degradation"	"AraCyc"	"13"	"3.71286621991575e-09"	"2"	"0.00329016068656004"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"13"	"9.52535843527028e-09"	"4"	"4.93907362402918e-06"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"12"	"1.09039028543517e-10"	"2"	"0.00213115775195651"
"Glycine, serine and threonine metabolism"	"KEGG"	"12"	"6.50979588624456e-05"	"2"	"0.0205695538721473"
"light harvesting complex"	"BioPath"	"10"	"1.30080181293982e-07"	"1"	"0.0130680590374077"
"Regulatory enzymes"	"BioPath"	"10"	"5.12398866427424e-10"	"1"	"0.00277720032579778"
"trehalose metabolism"	"BioPath"	"10"	"1.30080181293982e-07"	"1"	"0.0590779741265328"
"embryonic development"	"TAIR-GO"	"10"	"0.0017249617826406"	"1"	"0.0825621783345742"
"glucose metabolism"	"TAIR-GO"	"10"	"1.12743453568668e-08"	"1"	"0.00605546324930736"
"glucosinolate biosynthesis"	"TAIR-GO"	"10"	"1.08550456797674e-05"	"1"	"0.0161442235815537"
"pentose-phosphate shunt, oxidative branch"	"TAIR-GO"	"10"	"1.12743453568668e-08"	"1"	"0.00605546324930736"
"photosynthesis"	"TAIR-GO"	"10"	"0.00145111387157624"	"1"	"0.0902839649138963"
"photosynthesis light harvesting"	"TAIR-GO"	"10"	"4.04618995866885e-07"	"1"	"0.0161442235815537"
"response to light"	"TAIR-GO"	"10"	"0.012594269963598"	"1"	"0.242473737118489"
"trehalose metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"chlorophyll biosynthesis"	"AraCyc"	"10"	"0.0324059052372458"	"1"	"0.294410836212186"
"glucosinolate biosynthesis from homomethionine"	"AraCyc"	"10"	"8.47592783976367e-09"	"1"	"0.00409902438206036"
"trehalose biosynthesis II"	"AraCyc"	"10"	"0.0144610942210611"	"1"	"0.309899312423791"
"trehalose biosynthesis III"	"AraCyc"	"10"	"0.000298877174873330"	"1"	"0.142068063544985"
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"Citrate cycle (TCA cycle)"	"KEGG"	"10"	"0.00238886580162174"	"1"	"0.145255487173836"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"1.02907202925960e-05"	"1"	"0.0157931874098881"
"Glutathione metabolism"	"KEGG"	"10"	"0.00418992851141010"	"1"	"0.150975449695784"
"Glycan Biosynthesis and Metabolism"	"KEGG"	"10"	"0.0215203592525433"	"2"	"0.0839299046959743"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"10"	"3.55097957723309e-06"	"1"	"0.0643683726178581"
"Gibberellin metabolism"	"LitPath"	"10"	"0.0251492312516999"	"1"	"0.161256607317524"
"giberelin biosynthesis"	"LitPath"	"10"	"0.00182793318083899"	"1"	"0.102658468837345"
"acetate metabolism"	"TAIR-GO"	"9"	"0"	"1"	"0"
"glyoxylate cycle"	"TAIR-GO"	"9"	"0"	"1"	"0"
"phosphate transport"	"TAIR-GO"	"9"	"7.60226980144251e-10"	"1"	"0.00369334183374102"
"Membrane Transport"	"KEGG"	"9"	"4.10151892584696e-06"	"1"	"0.049768367498228"
"Other ion-coupled transporters"	"KEGG"	"9"	"7.64814629831722e-08"	"1"	"0.0157931874098881"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"9"	"0.00335823552669133"	"1"	"0.071790891742145"
"Early light-inducible proteins"	"BioPath"	"8"	"1.52458127984593e-05"	"1"	"0.0179304743200337"
"carotenoid biosynthesis"	"TAIR-GO"	"8"	"9.33842094421217e-05"	"1"	"0.0161442235815537"
"response to high light intensity"	"TAIR-GO"	"8"	"1.63565567048245e-08"	"1"	"0.00187725240944963"
"nucleotide metabolism"	"FunCat"	"8"	"0"	"2"	"0"
"N-Glycan biosynthesis"	"KEGG"	"8"	"1.50024551796980e-05"	"1"	"0.0343715482603719"
"auxin metabolism"	"TAIR-GO"	"7"	"2.24459244307005e-06"	"1"	"0.00605546324930736"
"fatty acid desaturation"	"TAIR-GO"	"7"	"2.11891341616155e-07"	"1"	"0.00187725240944963"
"gibberellic acid biosynthesis"	"TAIR-GO"	"7"	"0.00613258060499043"	"1"	"0.0302027662388403"
"photoinhibition"	"TAIR-GO"	"7"	"4.14521984400122e-07"	"1"	"0.00187725240944963"
"photomorphogenesis"	"TAIR-GO"	"7"	"1.01454027142793e-08"	"1"	"0.00187725240944963"
"regulation of transcription, DNA-dependent"	"TAIR-GO"	"7"	"0"	"1"	"0"
"glycosylglyceride desaturation pathway"	"AraCyc"	"7"	"1.09740870474215e-06"	"1"	"0.00249304333236196"
"C-compound, carbohydrate catabolism"	"FunCat"	"7"	"0.0331715814108705"	"3"	"0.0152814299255565"
"mRNA synthesis "	"FunCat"	"7"	"0.00984694207088816"	"1"	"0.133589703962454"
"RNA synthesis "	"FunCat"	"7"	"0.00984694207088816"	"1"	"0.133589703962454"
"transcription"	"FunCat"	"7"	"6.04177839779197e-05"	"1"	"0.0421081255093762"
"transcriptional control"	"FunCat"	"7"	"0.000411158834180452"	"1"	"0.0314855021381973"
"HORMONE DATA SET"	"quantDE"	"1.699271"	"maxDE"	"3.3989557"	"HORMONE DATA SET"
"Photosystems "	"BioPath"	"109"	"9.51302784528315e-24"	"18"	"2.43075537566381e-06"
"C-compound and carbohydrate metabolism"	"FunCat"	"82"	"3.92483413979546e-09"	"12"	"0.0656859313257637"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"71"	"3.22776677453969e-08"	"10"	"0.00476588718747181"
"Intermediary Carbon Metabolism"	"BioPath"	"62"	"0.0080431206749992"	"10"	"0.236238455447185"
"additional photosystem II components"	"BioPath"	"56"	"7.84517097411817e-18"	"8"	"0.000176266402744027"
"Photosynthesis"	"KEGG"	"53"	"1.06141289182302e-31"	"11"	"1.16941538412715e-10"
"Carbon fixation"	"KEGG"	"52"	"1.17611753505768e-16"	"7"	"0.000880668271758443"
"photosynthesis"	"FunCat"	"50"	"3.58390376315483e-24"	"7"	"4.99860037474808e-05"
"biogenesis of chloroplast"	"FunCat"	"47"	"8.98824955867432e-15"	"7"	"0.00053401269049788"
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	"45"	"1.90194848411861e-06"	"6"	"0.0335673521282461"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"43"	"2.08845519675677e-10"	"6"	"0.00162348236824551"
"chlorophyll biosynthesis"	"AraCyc"	"42"	"9.23625692219424e-14"	"7"	"0.00128252778634814"
"glycosylglyceride desaturation pathway"	"AraCyc"	"37"	"0"	"4"	"0"
"Nucleotide Metabolism"	"KEGG"	"37"	"5.26980916177419e-08"	"6"	"0.00950142021442425"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"37"	"8.15871108801827e-16"	"5"	"0.000151141923847768"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"37"	"8.77925832699063e-24"	"4"	"0.000199795282505471"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"37"	"2.48046835807307e-12"	"5"	"0.000594799658945319"
"Photosystem I"	"BioPath"	"35"	"0.000673824507744445"	"6"	"0.0335673521282461"
"chlorophyll biosynthesis"	"TAIR-GO"	"35"	"2.05734676796519e-21"	"4"	"9.55760071207668e-05"
"tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)"	"FunCat"	"32"	"0.000503471634160673"	"4"	"0.210301061308777"
"glycolysis and gluconeogenesis"	"FunCat"	"31"	"0.00901565126308094"	"5"	"0.160279895774944"
"Purine metabolism"	"KEGG"	"31"	"1.02491381815986e-06"	"5"	"0.0109278986353174"
"phospholipid desaturation pathway"	"AraCyc"	"30"	"6.21199518853012e-30"	"3"	"1.46392556686164e-05"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio"	"KEGG"	"30"	"6.4879747967445e-29"	"3"	"0.000105781065699315"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation"	"KEGG"	"30"	"9.55334060568276e-34"	"3"	"1.35624078849844e-05"
"Androgen and estrogen metabolism"	"KEGG"	"30"	"8.72468693096236e-33"	"3"	"3.08722508687354e-05"
"Benzoate degradation via hydroxylation"	"KEGG"	"30"	"1.03958651696189e-23"	"3"	"0.000172004285822415"
"Glycolysis / Gluconeogenesis"	"KEGG"	"30"	"0.000510268591503135"	"4"	"0.0947528672592366"
"chlorophyll biosynthesis"	"LitPath"	"29"	"3.91829335436246e-21"	"3"	"0.000135270464655033"
"Photosystem II"	"BioPath"	"27"	"0.00135283185067203"	"4"	"0.0586113845401832"
"gluconeogenesis"	"AraCyc"	"26"	"2.3000520413262e-06"	"3"	"0.118934343396930"
"Citrate cycle (TCA cycle)"	"KEGG"	"26"	"3.11625738722744e-07"	"3"	"0.0390496948092649"
"Pyruvate metabolism"	"KEGG"	"26"	"0.00757543565753621"	"3"	"0.191724793153914"
"nucleotide metabolism"	"FunCat"	"25"	"0"	"4"	"0"
"Chlorophyll a/b binding proteins"	"BioPath"	"24"	"1.69709757526696e-06"	"3"	"0.0174643137392666"
"photosystem II type II  chlorophyll a /b binding protein"	"BioPath"	"24"	"1.06069157336586e-25"	"3"	"8.5910015319385e-06"
"formaldehyde assimilation I (serine pathway)"	"AraCyc"	"22"	"3.26161577464387e-07"	"3"	"0.0478304341286238"
"serine-isocitrate lyase pathway"	"AraCyc"	"22"	"0.000231175243892346"	"3"	"0.118934343396930"
"acetate fermentation"	"AraCyc"	"21"	"0.00633839117194555"	"4"	"0.156341297520052"
"fructose degradation (anaerobic)"	"AraCyc"	"21"	"0.0031811030607252"	"4"	"0.123962648357475"
"glycolysis IV"	"AraCyc"	"21"	"0.00348285493238102"	"4"	"0.130167563350820"
"mannitol degradation"	"AraCyc"	"21"	"1.51545632123500e-10"	"4"	"0.00332542107045766"
"sorbitol degradation"	"AraCyc"	"21"	"3.4872804242793e-10"	"4"	"0.00397940604053786"
"sorbitol fermentation"	"AraCyc"	"21"	"0.00687103360981921"	"4"	"0.142991034324979"
"purine nucleotide metabolism"	"FunCat"	"21"	"3.47932580109797e-11"	"3"	"0.00364817224688511"
"response to light"	"TAIR-GO"	"20"	"4.3661828983015e-06"	"3"	"0.0460030125656327"
"Calvin cycle"	"AraCyc"	"20"	"3.31773617871021e-05"	"3"	"0.0735324076161264"
"Fructose and mannose metabolism"	"KEGG"	"20"	"0.00189028250494755"	"3"	"0.0558534213860989"
"Pentose phosphate pathway"	"KEGG"	"20"	"5.47210958459123e-05"	"3"	"0.0390496948092649"
"monoterpenoid biosynthesis"	"TAIR-GO"	"19"	"5.49455465800741e-19"	"2"	"0.000192346937317573"
"starch biosynthesis"	"TAIR-GO"	"19"	"1.28043679474132e-13"	"2"	"0.00155175094076431"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"19"	"1.5482896906305e-05"	"2"	"0.090968136480971"
"monoterpene biosynthesis"	"LitPath"	"19"	"2.91199812205844e-16"	"2"	"0.000371707517306138"
"terpenoid metabolism"	"LitPath"	"19"	"1.68495644136008e-05"	"2"	"0.0980812662414452"
"Ferredoxin"	"BioPath"	"18"	"5.94494147376857e-13"	"4"	"4.81428160885303e-05"
"biosynthesis of proto- and siroheme"	"AraCyc"	"18"	"0.00173757728636190"	"5"	"0.00670078532217618"
"Glycine, serine and threonine metabolism"	"KEGG"	"18"	"0.000415743196184665"	"3"	"0.0256066326745496"
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	"18"	"2.41776418730324e-05"	"3"	"0.0107973384955042"
"photoinhibition"	"TAIR-GO"	"17"	"4.15433805399562e-20"	"2"	"4.94102224302023e-05"
"regulation of transcription"	"TAIR-GO"	"17"	"0"	"2"	"0"
"Alanine and aspartate metabolism"	"KEGG"	"17"	"0.00028910224652596"	"2"	"0.0728263016668179"
"Carotenoid biosynthesis"	"BioPath"	"16"	"1.80476090469847e-05"	"2"	"0.0191008985590978"
"Early light-inducible proteins"	"BioPath"	"16"	"8.84727338607227e-10"	"2"	"0.00476316765212814"
"carotenoid biosynthesis"	"TAIR-GO"	"16"	"2.64347833818731e-10"	"2"	"0.00241668415231223"
"fatty acid biosynthesis"	"TAIR-GO"	"16"	"2.99594586172694e-06"	"2"	"0.0162740785621945"
"magnesium chelatase complex"	"TAIR-GO"	"16"	"0"	"2"	"0"
"response to high light intensity"	"TAIR-GO"	"16"	"7.75380979181782e-19"	"2"	"4.94102224302023e-05"
"acetyl-CoA assimilation"	"AraCyc"	"16"	"0.00180241729963133"	"2"	"0.149630359518181"
"aspartate degradation I"	"AraCyc"	"16"	"0.000768890770796532"	"2"	"0.0937671148242542"
"aspartate degradation II"	"AraCyc"	"16"	"1.29450650779758e-06"	"2"	"0.0273550457936639"
"carotenoid biosynthesis"	"AraCyc"	"16"	"4.40688688828509e-07"	"2"	"0.00705563260545018"
"glyoxylate cycle"	"AraCyc"	"16"	"0.000162538997603213"	"2"	"0.0699038867741177"
"mixed acid fermentation"	"AraCyc"	"16"	"0.00088301616112772"	"2"	"0.180770018741444"
"phenylalanine degradation I"	"AraCyc"	"16"	"0.000104319194371244"	"2"	"0.102376052353989"
"TCA cycle -- aerobic respiration"	"AraCyc"	"16"	"0.018472379138588"	"2"	"0.316939363410568"
"TCA cycle variation II"	"AraCyc"	"16"	"1.10980228642582e-07"	"2"	"0.0322139112070483"
"TCA cycle variation IV"	"AraCyc"	"16"	"0.0150924429047054"	"2"	"0.293569621558881"
"TCA cycle variation VIII"	"AraCyc"	"16"	"0.0380491638194827"	"2"	"0.340345652613460"
"biogenesis of cell wall"	"FunCat"	"16"	"0.0159376254790327"	"2"	"0.326768621457786"
"Cyanoamino acid metabolism"	"KEGG"	"16"	"2.68324948890371e-06"	"2"	"0.0426607923205149"
"carotenid biosynthesis"	"LitPath"	"16"	"9.12096849862675e-08"	"2"	"0.00532574424974056"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"16"	"9.39807634372408e-05"	"2"	"0.0339643866697044"
"Oxygen-evolving enhancer protein"	"BioPath"	"14"	"1.15086299246506e-10"	"2"	"0.00147652497099633"
"photorespiration"	"AraCyc"	"14"	"0.000487267483528062"	"4"	"0.0128367097759634"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"14"	"0.0246177366709008"	"3"	"0.0382753238380735"
"Methionine metabolism"	"KEGG"	"14"	"0.000214255570201456"	"3"	"0.00310435145791559"
"phosphate transport"	"TAIR-GO"	"13"	"4.69718435671792e-14"	"2"	"0.000192346937317573"
"formylTHF biosynthesis"	"AraCyc"	"12"	"8.99777042095597e-05"	"2"	"0.0374921022455617"
"Pyrimidine metabolism"	"KEGG"	"12"	"0.0290450720961642"	"2"	"0.131022747408711"
"systemic acquired resistance"	"TAIR-GO"	"11"	"5.31628755203895e-08"	"2"	"0.00155175094076431"
"mRNA synthesis "	"FunCat"	"11"	"0.000832854274924146"	"2"	"0.0511163226909788"
"RNA synthesis "	"FunCat"	"11"	"0.000832854274924146"	"2"	"0.0511163226909788"
"transcription"	"FunCat"	"11"	"2.844254297983e-07"	"2"	"0.00853360061765761"
"transcriptional control"	"FunCat"	"11"	"5.84086979112146e-06"	"2"	"0.00539888550355443"
"aspartate/ornithin cycle / nitric oxid from glutamate"	"BioPath"	"10"	"0.00108889746859774"	"1"	"0.176065654007288"
"mRNA processing in chloroplast"	"BioPath"	"10"	"0.000348440519876105"	"3"	"0.00300787317027961"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"10"	"0.0254811604104584"	"1"	"0.156251601598645"
"Plastocyanin"	"BioPath"	"10"	"1.85503596021544e-09"	"1"	"0.00296993706805764"
"Regulatory enzymes"	"BioPath"	"10"	"3.57588340766157e-07"	"1"	"0.00858928214701652"
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	"10"	"0.000252639928925627"	"1"	"0.0385142120870608"
"Transcriptional regulators (chloroplast)"	"BioPath"	"10"	"1.85503596021544e-09"	"1"	"0.00296993706805764"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"10"	"5.56359541368906e-08"	"1"	"0.00779819072385965"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"4.49585533583971e-09"	"1"	"0.00399526883058861"
"enzyme binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"pentose-phosphate shunt"	"TAIR-GO"	"10"	"0.000128837491662467"	"2"	"0.00852600844599016"
"photosynthesis"	"TAIR-GO"	"10"	"0.013239675732969"	"2"	"0.035703365958806"
"positive regulation of transcription"	"TAIR-GO"	"10"	"2.94461959723721e-09"	"1"	"0.00399526883058861"
"response to temperature"	"TAIR-GO"	"10"	"2.94461959723721e-09"	"1"	"0.00399526883058861"
"tetrapyrrole binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"methionine degradation I"	"AraCyc"	"10"	"7.01914051693293e-05"	"2"	"0.00705563260545018"
"starch biosynthesis"	"AraCyc"	"10"	"0"	"1"	"0"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"10"	"0.000568662873934023"	"3"	"0.0122102969397794"
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	"10"	"4.38070458670219e-06"	"1"	"0.0321449752450133"
"biosynthesis of phenylpropanoids"	"FunCat"	"10"	"0.0375950602843780"	"1"	"0.290177648948468"
"biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine"	"FunCat"	"10"	"0.0375950602843780"	"1"	"0.290177648948468"
"biosynthesis of vitamins, cofactors, and prosthetic groups"	"FunCat"	"10"	"7.12100896623825e-05"	"2"	"0.00853360061765761"
"transport "	"FunCat"	"10"	"1.90111861365404e-12"	"3"	"0"
"transport facilitation"	"FunCat"	"10"	"0"	"3"	"0"
"Reductive carboxylate cycle (CO2 fixation)"	"KEGG"	"10"	"0.00706627483621681"	"1"	"0.13011969321824"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"10"	"0.0170381008936937"	"1"	"0.192541651924491"
"abscisic acid biosynthesis"	"TAIR-GO"	"9"	"0.00026202836374701"	"1"	"0.0506041779804173"
"adenosine salvage"	"TAIR-GO"	"9"	"1.44188457189268e-10"	"1"	"0.00136469642514967"
"carbohydrate biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"sucrose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"monoterpene biosynthesis"	"AraCyc"	"9"	"2.31636894116416e-07"	"1"	"0.00513386532184297"
"plant monoterpene biosynthesis"	"AraCyc"	"9"	"1.59372115828508e-09"	"1"	"0.00176009419289368"
"Membrane Transport"	"KEGG"	"9"	"0.00277737508789149"	"1"	"0.152012007733427"
"Other ion-coupled transporters"	"KEGG"	"9"	"9.45735592527059e-05"	"1"	"0.0531372814203838"
"photosystem I reaction center"	"BioPath"	"8"	"0.000668334839897999"	"2"	"0.0105410054635046"
"chlorophyll binding"	"TAIR-GO"	"8"	"0.0146493167414047"	"1"	"0.0816666596916768"
"porphyrin biosynthesis"	"TAIR-GO"	"8"	"0.00590295491896641"	"2"	"0.0107909007429998"
"carbon monoxide dehydrogenase pathway"	"AraCyc"	"8"	"0.00639397342314661"	"2"	"0.111286888782271"
"methionine and S-adenosylmethionine synthesis"	"AraCyc"	"8"	"2.95251674423831e-05"	"2"	"0.00133236839456964"
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"8"	"0.0103725095872778"	"1"	"0.0788165276786028"
"secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"8"	"0"	"1"	"0"
"N-Glycan biosynthesis"	"KEGG"	"8"	"0.00516016639132318"	"1"	"0.109069274555082"
"One carbon pool by folate"	"KEGG"	"8"	"0.000698020675335263"	"2"	"0.00868163411129446"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"8"	"0.00965511830735367"	"2"	"0.0109500498104907"
"auxin metabolism"	"TAIR-GO"	"7"	"2.0013852700176e-05"	"1"	"0.0126849809464193"
"brassinosteroid mediated signaling"	"TAIR-GO"	"7"	"8.0513995732446e-09"	"1"	"0.00136469642514967"
"fatty acid desaturation"	"TAIR-GO"	"7"	"2.02346019771636e-06"	"1"	"0.00399526883058861"
"gibberellic acid biosynthesis"	"TAIR-GO"	"7"	"0.0314384855267577"	"1"	"0.0603899153880781"
"photomorphogenesis"	"TAIR-GO"	"7"	"1.02912591989764e-07"	"1"	"0.00399526883058861"
"photosystem I"	"TAIR-GO"	"7"	"0.000334429961748468"	"1"	"0.025380051811014"
"photosystem II"	"TAIR-GO"	"7"	"3.95660664176147e-05"	"1"	"0.0126849809464193"
"photosystem II assembly"	"TAIR-GO"	"7"	"4.33842745776041e-07"	"1"	"0.00399526883058861"
"photosystem II stabilization"	"TAIR-GO"	"7"	"5.90764233801625e-08"	"1"	"0.00136469642514967"
"regulation of transcription, DNA-dependent"	"TAIR-GO"	"7"	"0"	"1"	"0"
"systemic acquired resistance, salicylic acid mediated signaling pathway"	"TAIR-GO"	"7"	"5.90764233801625e-08"	"1"	"0.00399526883058861"
"starch degradation"	"AraCyc"	"7"	"0.0306692426415454"	"1"	"0.129211939049092"
"degradation "	"FunCat"	"7"	"0.047450804951198"	"1"	"0.196161514444752"
"protein degradation "	"FunCat"	"7"	"0.00724341226848668"	"1"	"0.118483174234266"
"Novobiocin biosynthesis"	"KEGG"	"7"	"0.0129770997753792"	"1"	"0.0615294244402717"
"MUTANT DATA SET"	"quantDE"	"1.779535"	"maxDE"	"3.141699815"	"MUTANT DATA SET"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"12"	"0.000160727592535999"	"2"	"0.0295679135883546"
"pectin metabolism"	"BioPath"	"12"	"1.05127076734192e-10"	"2"	"0.00306697544904293"
"core phenylpropanoid metabolism"	"BioPath"	"10"	"2.89876784283625e-10"	"1"	"0.00404491802603490"
"Phenylpropanoid Metabolism"	"BioPath"	"10"	"6.25391130075601e-05"	"1"	"0.0527624176370645"
"biogenesis of cell wall"	"FunCat"	"10"	"3.85839326143549e-10"	"1"	"0.00590737232155983"
"biosynthesis of phenylpropanoids"	"FunCat"	"10"	"2.39266403844250e-12"	"1"	"0.00168693304112518"
"biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine"	"FunCat"	"10"	"2.39266403844250e-12"	"1"	"0.00168693304112518"
"Phenylpropanoid pathway"	"LitPath"	"10"	"0"	"1"	"0"
"C-compound and carbohydrate metabolism"	"FunCat"	"8"	"0.0102455687292055"	"1"	"0.0848244674123214"
"Ribosome"	"KEGG"	"8"	"0"	"2"	"0"