Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP51A2 (At1g11680) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.







Pathway Source Sum of scores Sum of genes







sterol biosynthesis BioPath 200 20







sterol biosynthesis TAIR-GO 200 20







sterol biosynthesis AraCyc 200 20







Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 90 9
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.








triterpene, sterol, and brassinosteroid metabolism LitPath 82 9









brassinosteroid biosynthesis LitPath 72 8









sterol and brassinosteroid biosynthesis LitPath 72 8
For more information on how these pathway maps were generated please read the methods page
























































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP51A2 (At1g11680)







max. difference between log2-ratios: 2.6











max. difference between log2-ratios excluding lowest and highest 5%: 1.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 10 0.000 1 0.008


sterol biosynthesis BioPath 10 0.000 1 0.001

sterol biosynthesis TAIR-GO 10 0.000 1 0.000










sterol biosynthesis AraCyc 10 0.000 1 0.000










Fatty acid metabolism KEGG 10 0.000 1 0.000










gamma-Hexachlorocyclohexane degradation KEGG 10 0.000 1 0.000










Tryptophan metabolism KEGG 10 0.000 1 0.000










brassinosteroid biosynthesis LitPath 10 0.000 1 0.009










sterol and brassinosteroid biosynthesis LitPath 10 0.000 1 0.004










triterpene, sterol, and brassinosteroid metabolism LitPath 10 0.000 1 0.079












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP51A2 (At1g11680)







max. difference between log2-ratios: 2.3











max. difference between log2-ratios excluding lowest and highest 5%: 0.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 10 0.000 1 0.001
sterol biosynthesis BioPath 10 0.000 1 0.000










sterol biosynthesis TAIR-GO 10 0.000 1 0.000










sterol biosynthesis AraCyc 10 0.000 1 0.000










Fatty acid metabolism KEGG 10 0.000 1 0.000










gamma-Hexachlorocyclohexane degradation KEGG 10 0.000 1 0.000










Tryptophan metabolism KEGG 10 0.000 1 0.000










brassinosteroid biosynthesis LitPath 10 0.000 1 0.003










sterol and brassinosteroid biosynthesis LitPath 10 0.000 1 0.001










triterpene, sterol, and brassinosteroid metabolism LitPath 10 0.000 1 0.027












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP51A2 (At1g11680)







max. difference between log2-ratios: 2.5











max. difference between log2-ratios excluding lowest and highest 5%: 1.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 20 0.000 2 0.000





Biosynthesis of prenyl diphosphates BioPath 10 0.000 1 0.002




sterol biosynthesis BioPath 10 0.000 1 0.001




jasmonic acid biosynthesis TAIR-GO 10 0.000 1 0.001










response to jasmonic acid stimulus TAIR-GO 10 0.000 1 0.000










response to wounding TAIR-GO 10 0.000 1 0.001










sterol biosynthesis TAIR-GO 10 0.000 1 0.001










jasmonic acid biosynthesis AraCyc 10 0.000 1 0.000










lipoxygenase pathway AraCyc 10 0.000 1 0.000










sterol biosynthesis AraCyc 10 0.000 1 0.000










Fatty acid metabolism KEGG 10 0.000 1 0.000










gamma-Hexachlorocyclohexane degradation KEGG 10 0.000 1 0.000










Tryptophan metabolism KEGG 10 0.000 1 0.000










Lipid signaling AcylLipid 10 0.000 1 0.062










brassinosteroid biosynthesis LitPath 10 0.000 1 0.009










oxylipin pathway LitPath 10 0.000 1 0.000










prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 10 0.000 1 0.004










sterol and brassinosteroid biosynthesis LitPath 10 0.000 1 0.004










triterpene, sterol, and brassinosteroid metabolism LitPath 10 0.003 1 0.079





























































Pathways co-expressed in the Mutant data set (with more than 30 annotation points)
CYP51A2 (At1g11680)







max. difference between log2-ratios: 2.8











max. difference between log2-ratios excluding lowest and highest 5%: 1.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Leaf Glycerolipid Biosynthesis BioPath 100 0.000 14 0.025



C-compound and carbohydrate metabolism FunCat 89 0.000 13 0.228


Folding, Sorting and Degradation KEGG 86 0.000 17 0.000


Leaf Glycerolipid Biosynthesis in Plastid BioPath 80 0.000 12 0.000


Synthesis of fatty acids in plastids AcylLipid 80 0.000 14 0.000


Pyruvate metabolism KEGG 75 0.000 11 0.002


Intermediary Carbon Metabolism BioPath 66 0.002 12 0.048


transport FunCat 63 0.000 12 0.000


Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 59 0.000 7 0.054


biogenesis of chloroplast FunCat 56 0.000 9 0.000


triterpene, sterol, and brassinosteroid metabolism LitPath 52 0.000 6 0.015


Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 50 0.000 5 0.093


sterol biosynthesis BioPath 50 0.000 5 0.001


sterol biosynthesis AraCyc 50 0.000 5 0.000










protein catabolism TAIR-GO 48 0.000 9 0.001










ubiquitin-dependent protein catabolism TAIR-GO 48 0.000 9 0.000










Proteasome KEGG 48 0.000 9 0.001










Glycolysis / Gluconeogenesis KEGG 47 0.002 8 0.051










Fatty acid biosynthesis (path 1) KEGG 46 0.000 9 0.000










Carbon fixation KEGG 45 0.000 7 0.049










brassinosteroid biosynthesis LitPath 42 0.000 5 0.000










sterol and brassinosteroid biosynthesis LitPath 42 0.000 5 0.000










tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) FunCat 40 0.002 6 0.138










Biosynthesis of steroids KEGG 40 0.005 4 0.160










proteasome core complex (sensu Eukaryota) TAIR-GO 36 0.000 6 0.000










Citrate cycle (TCA cycle) KEGG 36 0.000 5 0.041










growth TAIR-GO 34 0.000 4 0.020










transport facilitation FunCat 34 0.000 6 0.000










Oxidative phosphorylation KEGG 34 0.003 9 0.015










metabolism of acyl-lipids in mitochondria AcylLipid 34 0.000 4 0.032










Glycan Biosynthesis and Metabolism KEGG 33 0.016 6 0.098



























page created by Juergen Ehlting 04/07/06