| _________________________________________ |
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| sterol biosynthesis |
BioPath |
200 |
20 |
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| sterol biosynthesis |
TAIR-GO |
200 |
20 |
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| sterol biosynthesis |
AraCyc |
200 |
20 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
90 |
9 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
82 |
9 |
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| brassinosteroid biosynthesis |
LitPath |
72 |
8 |
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| sterol and brassinosteroid biosynthesis |
LitPath |
72 |
8 |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) |
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CYP51A2 (At1g11680) |
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| max. difference between log2-ratios: |
2.6 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
1.0 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
10 |
0.000 |
1 |
0.008 |
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| sterol biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.001 |
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| sterol biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| sterol biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| Fatty acid metabolism |
KEGG |
10 |
0.000 |
1 |
0.000 |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.000 |
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| Tryptophan metabolism |
KEGG |
10 |
0.000 |
1 |
0.000 |
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| brassinosteroid biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.009 |
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| sterol and brassinosteroid biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.004 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
10 |
0.000 |
1 |
0.079 |
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| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) |
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CYP51A2 (At1g11680) |
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| max. difference between log2-ratios: |
2.3 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
0.5 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to stress heatmap |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
10 |
0.000 |
1 |
0.001 |
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| sterol biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.000 |
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| sterol biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| sterol biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| Fatty acid metabolism |
KEGG |
10 |
0.000 |
1 |
0.000 |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.000 |
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| Tryptophan metabolism |
KEGG |
10 |
0.000 |
1 |
0.000 |
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| brassinosteroid biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.003 |
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| sterol and brassinosteroid biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.001 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
10 |
0.000 |
1 |
0.027 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) |
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CYP51A2 (At1g11680) |
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| max. difference between log2-ratios: |
2.5 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
1.1 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
20 |
0.000 |
2 |
0.000 |
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| Biosynthesis of prenyl diphosphates |
BioPath |
10 |
0.000 |
1 |
0.002 |
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| sterol biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.001 |
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| jasmonic acid biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.001 |
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| response to jasmonic acid stimulus |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| response to wounding |
TAIR-GO |
10 |
0.000 |
1 |
0.001 |
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| sterol biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.001 |
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| jasmonic acid biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| lipoxygenase pathway |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| sterol biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| Fatty acid metabolism |
KEGG |
10 |
0.000 |
1 |
0.000 |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.000 |
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| Tryptophan metabolism |
KEGG |
10 |
0.000 |
1 |
0.000 |
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| Lipid signaling |
AcylLipid |
10 |
0.000 |
1 |
0.062 |
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| brassinosteroid biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.009 |
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| oxylipin pathway |
LitPath |
10 |
0.000 |
1 |
0.000 |
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| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.004 |
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| sterol and brassinosteroid biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.004 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
10 |
0.003 |
1 |
0.079 |
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| Pathways co-expressed in the Mutant data set (with more than 30 annotation points) |
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CYP51A2 (At1g11680) |
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| max. difference between log2-ratios: |
2.8 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
1.0 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
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| Leaf Glycerolipid Biosynthesis |
BioPath |
100 |
0.000 |
14 |
0.025 |
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| C-compound and carbohydrate metabolism |
FunCat |
89 |
0.000 |
13 |
0.228 |
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| Folding, Sorting and Degradation |
KEGG |
86 |
0.000 |
17 |
0.000 |
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| Leaf Glycerolipid Biosynthesis in Plastid |
BioPath |
80 |
0.000 |
12 |
0.000 |
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| Synthesis of fatty acids in plastids |
AcylLipid |
80 |
0.000 |
14 |
0.000 |
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| Pyruvate metabolism |
KEGG |
75 |
0.000 |
11 |
0.002 |
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| Intermediary Carbon Metabolism |
BioPath |
66 |
0.002 |
12 |
0.048 |
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| transport |
FunCat |
63 |
0.000 |
12 |
0.000 |
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| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) |
BioPath |
59 |
0.000 |
7 |
0.054 |
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| biogenesis of chloroplast |
FunCat |
56 |
0.000 |
9 |
0.000 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
52 |
0.000 |
6 |
0.015 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
50 |
0.000 |
5 |
0.093 |
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| sterol biosynthesis |
BioPath |
50 |
0.000 |
5 |
0.001 |
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| sterol biosynthesis |
AraCyc |
50 |
0.000 |
5 |
0.000 |
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| protein catabolism |
TAIR-GO |
48 |
0.000 |
9 |
0.001 |
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| ubiquitin-dependent protein catabolism |
TAIR-GO |
48 |
0.000 |
9 |
0.000 |
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| Proteasome |
KEGG |
48 |
0.000 |
9 |
0.001 |
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| Glycolysis / Gluconeogenesis |
KEGG |
47 |
0.002 |
8 |
0.051 |
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| Fatty acid biosynthesis (path 1) |
KEGG |
46 |
0.000 |
9 |
0.000 |
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| Carbon fixation |
KEGG |
45 |
0.000 |
7 |
0.049 |
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| brassinosteroid biosynthesis |
LitPath |
42 |
0.000 |
5 |
0.000 |
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| sterol and brassinosteroid biosynthesis |
LitPath |
42 |
0.000 |
5 |
0.000 |
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| tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) |
FunCat |
40 |
0.002 |
6 |
0.138 |
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| Biosynthesis of steroids |
KEGG |
40 |
0.005 |
4 |
0.160 |
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| proteasome core complex (sensu Eukaryota) |
TAIR-GO |
36 |
0.000 |
6 |
0.000 |
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| Citrate cycle (TCA cycle) |
KEGG |
36 |
0.000 |
5 |
0.041 |
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| growth |
TAIR-GO |
34 |
0.000 |
4 |
0.020 |
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| transport facilitation |
FunCat |
34 |
0.000 |
6 |
0.000 |
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| Oxidative phosphorylation |
KEGG |
34 |
0.003 |
9 |
0.015 |
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| metabolism of acyl-lipids in mitochondria |
AcylLipid |
34 |
0.000 |
4 |
0.032 |
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| Glycan Biosynthesis and Metabolism |
KEGG |
33 |
0.016 |
6 |
0.098 |
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