| Co-Expression Analysis of: | CYP701A3 (At5g25900) | Institut de Biologie Moléculaire des Plantes |
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_____________________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ________________________ | _____________________________________________ | CYPedia Home | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mutant Data Set | save / view heatmap as: | OpenOffice Table | annotation details for co-expressed genes can be found to the right of the heatmap | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MS Excel Table | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| save / view all data as: | Tab delimited Table | For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) | magnitude of change [log2(mutant / wild type)] | 0 | 0.3 | 0.6 | 0.9 | 1.2 | 1.5 | 1.8 | 2.1 | 2.4 | 2.7 | >3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| greater than zero | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| less than zero | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Locus | r-value | Name | Description | 35S leafy, seedling (143) | aba1, fresh seeds (96) | abi1, fresh seeds (96) | abi3, fresh seeds (96) | acn1, seedlings (63) | acn1, seedlings, with sucrose (63) | add3, seedling (55) | ag12, shoot apex (89) | ag12, flower (89) | akt1, roots (141) | anr1, roots, dex treated, N03 depleted (64) | anr1, roots, not dex treated, N03 depleted (64) | anr1, roots, nitrate depleted (135) | ap1, shoot apex (89) | ap1, flower (89) | ap2, shoot apex (89) | ap2, flower (89) | ap3, shoot apex (89) | ap3, flower (89) | ape2, mature leaf, high light (68) | ape3, mature leaf, low light (68) | ARR22o, seedling (115) | ARR22o, seedling, zeatin (115) | ar4, whole plant (104) | bountifullo, juvenile leaf (48) | camta1, suspension cell (138) | camta1, seedling (138) | cdb1, seedling (137) | cdpk-yfp1, seedling (65) | cdpk-yfp4, seedling (65) | chs, juvenile leaf (67) | cir1-PR1-LUC, whole rosette (31) | cir1-ein2-PR-LUC, whole rosette (31) | cls8, seedling (76) | cls8, seedling, 4°C (76) | clv3, shoot apex (89) | clv3, flower (89) | cngc1, roots (141) | cngc4, roots (141) | co, apical region, vegetative (94) | co, apical region, reproductive, 3d (94) | co, apical region, reproductive, 5d (94) | co, apical region, reproductive, 7d (94) | coi1, senescing leaf (60) | cov, stem, base (66) | cov, stem, tip (66) | det2, seedling, mock, 30min (111) | det2, seedling, BL, 30min (111) | det2, seedling, mock, 1h (111) | det2, seedling, BL, 1h (111) | det2, seedling, mock, 3h (111) | det2, seedling, BL, 3h (111) | det2, seedling (131) | ein2, senescing leaf (60) | ein2-PR1-LUC, whole rosette (31) | etr1, whole plant, water (99) | etr1, whole plant, GA4, 60 min (99) | fls2, seedling, control (81) | fls2, seedling, flg22 (81) | ft, apical region, vegetative (94) | ft, apical region, reproductive, 3d (94) | ft, apical region, reproductive, 5d (94) | ft, apical region, reproductive, 7d (94) | fus, fresh seeds (96) | ga1, seedling, mock, 30min (111) | ga1, seedling, GA3, 30min (111) | ga1, seedling, mock, 1h (111) | ga1, seedling, GA3, 1h (111) | ga1, seedling, mock, 3h (111) | ga1, seedling, GA3, 3h (111) | ga1, seedling (131) | gl1, rosette leaf, stage 10 (88) | gl1, rosette leaf, stage 12 (88) | gpa1, seedling, ABA, 3h (75) | gpa1, seedling (75) | gun1-gun5, whole plant, Norflurazone (98) | hic, guard cell enriched (11) | hic, mature leaf (11) | hic, guard cell enriched, CO2 (11) | hic, mature leaf, CO2 (11) | iae1, hypocotyl (139) | iae2, hypocotyl (139) | icl2 (Col), seedling (28) | icl2 (Ws), seedling (28) | ir1, roots (142) | ku80, whole plant (57) | ku80, whole plant, bleomycin, 3d (57) | leafy-GR, seedling, de (143) | leafy-GR, seedling, de/cyc (143) | leafy-GR, seedling, cyc (143) | lfy, shoot apex (89) | lfy, flower (89) | lfy, apical region, vegetative (94) | lfy, apical region, reproductive, 3d (94) | lfy, apical region, reproductive, 5d (94) | lfy, apical region, reproductive, 7d (94) | ms1-ttg, flower bud, old (9) | ms1-ttg, flower bud, young (9) | myb61, seedling (15) | myb61, seedling, sucrose (15) | MYB61o, seedling (15) | MYB61o, seedling, sucrose (15) | nahG, senescing leaf (60) | o1, seedling (46) | o1, seedling, H202, 3h (46) | pasta2M1, mature leaf (150) | pho1, mature leaf (61) | pho3, leaf (27) | pmr4, mature leaf, Erysiphe cichoracearum (85) | pmr4, mature leaf (85) | RALF1o, seedling (152) | rbohB, seedling (59) | rbohB, seedling, 30°C, 1h (59) | rbohB, seedling, 40°C, 1h (59) | rbohC, root, elongation zone (79) | rdo, fresh seeds (96) | rhd2, lateral roots (29) | sfr2, whole rosette, 4°C (58) | sfr2, whole rosette (58) | sfr2-1, whole rosette, 4°C, 24h (12) | sfr2-1, whole rosette, 4°C, 24h (12) | sfr3, whole rosette, 4°C (58) | sfr3, whole rosette (58) | sfr6, whole rosette, 4°C (58) | sfr6, whole rosette (58) | sfr6, whole rosette, drought (58) | sfr6, seedling (76) | sfr6, seedling, 4°C (76) | sfr6, suspension cell, light (153) | sfr6, suspension cell, dark (153) | sph1, leaves, stage 5 (145) | sph1, leaves, stage 14 (145) | tcp13, flowers (100) | tcp14, flowers (100) | ttg, flower bud, old (9) | ttg, flower bud, young (9) | ufo1, shoot apex (89) | ufo1, flower (89) | gun1-gun5, seedling, far red then white light (83) | gun1-gun5, seedling, dark then white light (83) | zorro, seedlings, control, 2h (103) | zorro, seedlings, control 24h, (103) | zorro, seedlings, zearalenone, 2h (103) | zorro, seedlings, zearalenone, 24h (103) | Locus | Probeset | Name | Description | Annotation score | GO.keywords | FunCat keywords | AraCyc annotations | KEGG annotations | BioPath annotations | AcylLipid category | Literature annotations | Gene family | 90% quantile of DE | max. DE |
| At5g25900 | 1.000 | GA3, CYP701A3 | Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway. | 0.07 | -0.16 | -0.09 | -0.95 | -0.06 | -0.04 | -0.52 | 0.12 | 0.56 | 0.01 | 0.17 | -0.35 | -0.16 | -0.3 | -0.45 | -0.09 | -0.32 | 0.13 | 0.07 | 0.49 | 0.42 | 0.21 | 0.65 | -0.59 | 0 | 0.3 | 0.66 | 0.16 | 0.36 | -0.03 | 0.02 | 0.65 | 0.61 | 0.18 | 0.08 | 0.06 | -0.2 | 0.26 | 0.5 | -0.02 | -0.02 | -0.02 | -0.02 | -0.09 | 0.07 | 0.1 | -0.04 | -0.27 | -0.27 | -0.16 | -0.23 | -0.14 | 0.23 | -0.18 | 0.55 | 0.07 | 0.05 | 0.1 | 0.28 | -0.03 | 0.28 | 0.38 | 0.31 | -1.44 | 0.32 | 0.34 | 0.12 | 0.14 | 0.23 | 0.18 | 0.59 | -0.53 | 0 | -0.63 | -0.82 | 0.13 | -0.03 | 0.22 | 0.17 | -0.6 | -0.41 | 0.01 | -0.18 | 0.32 | 0.02 | -0.28 | 0.62 | 0.31 | -1.2 | -1.14 | -0.2 | -0.59 | -0.04 | 0.11 | 0.16 | -0.11 | -0.08 | -0.1 | 0.4 | -0.33 | -0.13 | 0.08 | 0.69 | 0.5 | -0.43 | -0.01 | -0.26 | -0.4 | -0.14 | -0.1 | 0.28 | 0.04 | -0.16 | 0.18 | 0.31 | -0.01 | 0.53 | 0.16 | 0.68 | -0.71 | -0.78 | -0.27 | 0.07 | -0.13 | -0.05 | 0.94 | 0.13 | 0.15 | -0.02 | 0.53 | 0.1 | -0.06 | 0.34 | -0.01 | -0.23 | -0.12 | 0.21 | -0.28 | -0.08 | 0.11 | -0.2 | -0.32 | -0.24 | 0.11 | At5g25900 | 246864_at | GA3, CYP701A3 | Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway. | 10 | gibberellic acid biosynthesis | ent-kaurene oxidase activity | oxygen binding | microsome | gibberellic acid mediated signaling | biosynthesis of derivatives of homoisopentenyl pyrophosphate | plant / fungal specific systemic sensing and response | plant hormonal regulation | Diterpenoid biosynthesis | Gibberellin metabolism | giberelin biosynthesis | cytochrome P450 family, multifunctional ent-kaurene oxidase, gibberellin biosynthesis | 1.24 | 2.37 | |||
| At5g54080 | 0.539 | HGO | homogentisate 1,2-dioxygenase / homogentisicase/homogentisate oxygenase / homogentisic acid oxidase | 0.22 | -0.15 | -0.36 | -0.89 | 0.12 | -0.01 | -0.93 | -0.5 | 0.23 | 0.1 | -0.23 | -0.01 | -0.15 | -0.19 | 0.87 | -0.34 | 0.4 | -0.33 | 0.37 | 0.31 | 0.13 | -0.56 | 1.07 | -1.02 | -1 | 0.96 | 0.74 | 0.14 | 0.64 | -0.14 | 0.39 | 0.82 | 0.83 | -0.3 | 0.04 | -0.21 | 1.01 | 0.06 | 0.67 | -0.01 | -0.01 | -0.01 | -0.01 | 0.46 | -0.81 | 0.24 | -0.49 | -0.39 | -0.19 | -0.55 | -0.18 | -0.14 | 0.72 | 0.25 | 0.4 | 0.15 | 0.03 | 0.31 | 0.13 | -0.14 | 0.1 | 0.02 | 0.16 | -0.53 | 0.1 | 0.23 | 0.06 | 0.12 | -0.27 | 0.1 | 0.4 | 0.44 | -0.12 | -0.84 | -0.61 | 0.53 | -1.05 | -0.76 | -0.71 | -0.16 | 0.14 | -0.7 | 1.49 | 0.43 | 0.49 | 0.26 | 1.02 | -0.03 | -2.68 | -2.85 | -0.36 | 0.03 | -0.22 | -0.11 | -0.1 | -0.28 | 0.02 | -1.63 | 0.62 | -0.15 | 0.31 | -0.02 | 0.68 | -0.45 | -0.53 | 0.17 | -0.71 | 0.37 | 0.28 | -0.01 | 0.63 | -0.09 | 0.1 | -0.08 | -0.08 | 0.08 | 0.05 | 0.09 | 1.15 | -0.56 | 0.14 | 0.42 | -0.22 | -0.14 | -0.87 | 3.2 | -0.13 | 0.67 | -0.01 | -0.23 | 0.62 | -0.39 | 0.11 | 0.16 | -0.32 | -1.25 | -0.43 | 0.56 | 0.35 | 1.04 | 0.04 | 0.18 | 0.06 | -0.16 | At5g54080 | 248193_at | HGO | homogentisate 1,2-dioxygenase / homogentisicase/homogentisate oxygenase / homogentisic acid oxidase | 6 | phenylalanine degradation I | tyrosine degradation | Tyrosine metabolism | Styrene degradation | 1.87 | 6.05 | ||||||
| At3g06810 | 0.514 | low similarity to acyl-CoA dehydrogenase (Acinetobacter sp.) | 0.16 | 0.01 | 0.05 | -1.1 | -0.12 | -0.25 | 0.18 | -0.28 | 0.03 | -0.18 | -0.18 | -0.07 | -0.13 | -0.28 | -0.11 | -0.31 | -0.19 | -0.22 | -0.24 | 0.1 | 0.07 | 0.79 | 0.73 | 0.4 | -0.3 | -0.11 | 0.56 | 0.28 | 0.04 | 0.23 | -0.03 | 0.61 | 0.02 | -0.06 | -0.05 | -0.37 | -0.05 | 0.02 | 0.21 | 0.02 | 0.02 | 0.02 | 0.02 | 0.14 | -0.04 | 0.05 | -0.14 | 0.23 | -0.16 | 0.28 | -0.28 | -0.08 | 0.12 | -0.19 | 0.02 | 0.4 | 0.49 | -0.03 | 0.26 | -0.05 | 0.09 | 0.26 | 0.15 | -0.75 | 0.1 | 0 | 0 | -0.03 | -0.04 | 0.11 | -0.14 | -0.12 | 0.28 | -0.2 | 0.19 | 0.18 | -0.62 | -0.52 | 0.49 | -0.45 | -0.2 | -0.16 | -0.16 | -0.17 | 0.21 | 0.67 | 1.35 | -0.03 | -1.02 | -1.49 | -0.11 | -0.38 | -0.18 | -0.02 | 0.15 | 0.1 | 0.07 | -0.38 | 0.16 | -0.49 | 0.12 | -0.16 | 0.65 | -0.13 | 0.09 | 0.01 | 1.03 | 0.4 | 0.11 | 0.33 | 0.17 | 0.23 | 0.05 | -0.05 | 0.12 | 0.11 | 0.37 | 0.01 | -0.16 | -0.28 | -0.07 | 0.35 | 0.07 | 0.02 | -0.28 | 0.83 | 0.1 | -0.01 | 0.02 | 0.03 | -0.04 | 0.04 | 0.27 | -0.22 | -0.41 | -0.38 | -0.06 | 0.01 | -0.92 | 0.2 | -0.2 | -0.16 | -0.3 | 0.26 | At3g06810 | 258524_at | low similarity to acyl-CoA dehydrogenase (Acinetobacter sp.) | 2 | Propanoate metabolism | Fatty acid metabolism | Valine, leucine and isoleucine degradation | metabolism of Other Amino Acids | Degradation of storage lipids and straight fatty acids | 1.09 | 2.84 | ||||||||
| At1g03090 | 0.513 | MCCA | Methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA). MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. | 0.36 | -0.06 | 0.2 | -1.01 | -0.06 | 0.34 | -1.19 | -0.36 | 0.08 | 0.09 | -0.09 | -0.02 | -0.02 | -0.26 | 0.25 | -0.03 | 0.19 | -0.28 | 0.15 | 0.47 | -0.03 | -1.02 | 0.57 | -1.14 | -0.48 | 1.01 | 0.71 | 0.61 | 1.07 | -0.31 | 0.51 | 1.32 | -0.03 | -0.25 | 0.38 | 0.08 | 0.4 | 0.45 | 1.81 | -0.03 | -0.03 | -0.03 | -0.03 | -0.07 | -0.78 | -0.23 | 0.1 | 0.84 | 0.31 | 0.1 | 0.21 | 0.56 | 0.54 | -0.5 | 1.5 | -0.12 | -0.01 | 0.06 | 0.07 | -0.37 | -0.22 | -0.28 | -0.32 | -0.96 | -0.66 | -0.2 | 0.34 | -0.78 | 0.44 | 0.37 | 0.31 | 0.01 | -0.55 | -0.11 | 0.62 | 0.17 | -1.29 | -0.99 | -0.52 | -1.5 | 0.28 | -0.93 | 2.02 | 1.5 | 0.38 | 0.17 | 0.66 | 0.26 | -3.31 | -3.52 | -0.44 | -0.48 | -0.33 | 0.22 | 0.03 | -0.04 | 0.03 | -1.04 | 0.67 | -0.54 | 1.04 | 0.08 | 0.53 | -0.04 | -0.12 | -0.3 | -1.18 | 0.11 | 0.04 | -0.18 | 1.13 | 0.2 | 0.11 | 0.24 | -0.07 | -0.01 | 0.59 | -0.03 | 1.29 | 0.18 | 0.33 | -0.03 | -0.32 | -0.03 | -1.7 | 3.62 | -0.36 | 0.28 | -0.03 | -0.69 | -0.03 | -0.07 | 0.47 | 0.14 | -1.33 | -2.04 | 0.38 | 0.56 | 0.67 | 1.11 | -0.22 | -0.36 | 0.03 | 0.05 | At1g03090 | 263118_at | MCCA | Methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA). MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. | 9 | methylcrotonoyl-CoA carboxylase activity | leucine catabolism | leucine degradation II | leucine degradation I | Valine, leucine and isoleucine degradation | metabolism of acyl-lipids in mitochondria | 2.33 | 7.14 | ||||
| At3g04880 | 0.504 | DRT102 | encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). | -0.06 | -0.66 | -0.47 | -1.27 | -0.09 | -0.13 | -0.44 | -0.27 | 0.4 | -0.08 | 0.63 | -0.08 | -0.2 | 0.86 | 0.99 | 0.03 | 0.24 | -0.11 | 0.47 | -0.06 | -0.05 | -0.13 | -0.13 | -0.03 | 0.47 | 0.31 | 0.25 | -0.26 | 0.5 | 0.18 | 0.2 | -0.09 | 0.23 | 0.3 | 0.44 | 0.08 | 0.31 | -0.15 | 0.45 | 0 | 0 | 0 | 0 | 0.27 | -0.2 | 0.05 | 0.1 | 0.11 | 0.11 | 0.06 | -0.13 | 0 | 0.33 | -0.13 | 0.16 | -0.01 | 0.04 | 0.13 | 0.11 | -0.05 | 0.03 | -0.01 | 0.01 | -0.65 | 0.36 | 0.21 | 0.34 | 0.22 | 0.04 | 0.2 | 0.47 | 0.24 | -0.11 | 0.16 | -0.12 | -0.17 | -0.38 | 0.64 | 0.37 | -0.62 | -0.08 | -0.07 | 0.3 | 0.66 | 0.04 | 0.19 | -0.47 | -0.18 | -2.63 | -2.16 | -0.17 | 0.22 | -0.02 | -0.21 | -0.01 | -0.13 | 0.05 | -0.5 | -0.03 | -0.49 | 0.14 | 0.52 | 0.2 | 0.52 | -0.17 | 0.1 | -0.71 | 0.34 | 0.06 | -0.22 | 0.43 | 0.01 | 0.06 | 0.33 | -0.07 | -0.36 | -0.17 | -0.08 | 0.23 | -0.09 | -0.32 | -0.13 | -0.03 | -0.23 | 0.06 | 2.16 | -0.06 | 0.4 | 0 | 0.02 | -0.13 | -0.55 | -0.18 | -0.05 | -0.02 | -0.54 | -0.26 | 0.26 | -0.1 | -0.12 | -0.01 | 0.02 | -0.18 | -0.11 | At3g04880 | 259100_a (m) | DRT102 | encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). | 7 | response to UV | photoreactive repair | Calvin cycle | ribose degradation | non-oxidative branch of the pentose phosphate pathway | superpathway of gluconate degradation | 1.06 | 4.79 | ||||||
| page created by Juergen Ehlting | 04/24/06 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||