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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| abscisic acid biosynthesis |
TAIR-GO |
36 |
6 |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
32.5 |
8 |
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| C-compound and carbohydrate metabolism |
FunCat |
25 |
4 |
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| sucrose metabolism |
BioPath |
20 |
2 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| response to hypoxia |
TAIR-GO |
20 |
2 |
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| sucrose biosynthesis |
AraCyc |
20 |
2 |
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| sucrose degradation III |
AraCyc |
20 |
2 |
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For more information on how these pathway maps were generated please read the methods page |
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| glycolysis and gluconeogenesis |
FunCat |
20 |
2 |
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| Starch and sucrose metabolism |
KEGG |
20 |
2 |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 8 annotation points) |
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CYP702A1 (At1g65670) |
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| max. difference between log2-ratios: |
6.3 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
0.6 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
18 |
0.001 |
5 |
0.049 |
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| C-compound and carbohydrate metabolism |
FunCat |
15 |
0.044 |
3 |
0.263 |
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| abscisic acid biosynthesis |
TAIR-GO |
12 |
0.000 |
2 |
0.000 |
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| abscisic acid biosynthesis |
AraCyc |
12 |
0.000 |
2 |
0.000 |
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| isoprenoid biosynthesis |
FunCat |
12 |
0.000 |
2 |
0.022 |
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| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
12 |
0.000 |
2 |
0.015 |
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| abscisic acid biosynthesis |
LitPath |
12 |
0.000 |
2 |
0.001 |
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| Carotenoid and abscisic acid metabolism |
LitPath |
12 |
0.000 |
2 |
0.011 |
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| Biosynthesis of prenyl diphosphates |
BioPath |
10 |
0.000 |
1 |
0.050 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
10 |
0.000 |
1 |
0.095 |
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| sucrose metabolism |
BioPath |
10 |
0.000 |
1 |
0.010 |
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| dolichol biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| response to hypoxia |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| sucrose biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.004 |
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| sucrose degradation III |
AraCyc |
10 |
0.000 |
1 |
0.002 |
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| glycolysis and gluconeogenesis |
FunCat |
10 |
0.009 |
1 |
0.326 |
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| Starch and sucrose metabolism |
KEGG |
10 |
0.000 |
1 |
0.015 |
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| polyprenyl diphosphate biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.013 |
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