Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP704A1 / CYP704A2 (At2g44980 / At2g45510) save all data as Tab Delimited Table










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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






C-compound and carbohydrate metabolism FunCat 66 13





































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP704A1 / CYP704A2 (At2g44980 / At2g45510)







max. difference between log2-ratios: 6.3











max. difference between log2-ratios excluding lowest and highest 5%: 4.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






C-compound and carbohydrate metabolism FunCat 43 0.000 9 0.001


Pyruvate metabolism KEGG 21 0.000 3 0.008

glycolysis and gluconeogenesis FunCat 20 0.000 4 0.010

Intermediary Carbon Metabolism BioPath 18 0.000 3 0.006

IAA biosynthesis AraCyc 18 0.000 2 0.000

TCA cycle variation VII AraCyc 18 0.000 3 0.010

Phenylpropanoid pathway LitPath 18 0.000 4 0.001

Phenylpropanoid Metabolism BioPath 16 0.000 3 0.008

glyoxylate cycle AraCyc 16 0.000 2 0.003

TCA cycle variation VIII AraCyc 16 0.000 2 0.022

Glyoxylate and dicarboxylate metabolism KEGG 16 0.000 2 0.004

Miscellaneous acyl lipid metabolism AcylLipid 16 0.000 4 0.100

core phenylpropanoid metabolism BioPath 14 0.000 2 0.001










Glutathione metabolism KEGG 14 0.000 2 0.011










fermentation FunCat 13 0.000 2 0.000










plant / fungal specific systemic sensing and response FunCat 13 0.000 2 0.001










plant hormonal regulation FunCat 13 0.000 2 0.001










Benzoate degradation via CoA ligation KEGG 13 0.000 3 0.017










Glycolysis / Gluconeogenesis KEGG 13 0.000 2 0.055










Tryptophan metabolism KEGG 13 0.000 3 0.001










lignin biosynthesis AraCyc 12 0.000 2 0.016












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP704A1 / CYP704A2 (At2g44980 / At2g45510)







max. difference between log2-ratios: 3.1











max. difference between log2-ratios excluding lowest and highest 5%: 1.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Biosynthesis of Amino Acids and Derivatives BioPath 22 0.000 5 0.000
Glutathione metabolism BioPath 22 0.000 5 0.000
Fatty acid metabolism KEGG 19 0.000 2 0.001
Glutathione metabolism KEGG 12 0.000 2 0.002
Gluconeogenesis from lipids in seeds BioPath 10 0.000 1 0.031
Degradation of storage lipids and straight fatty acids AcylLipid 10 0.000 1 0.006
C-compound and carbohydrate metabolism FunCat 9 0.004 1 0.172










fermentation FunCat 9 0.000 1 0.001










1- and 2-Methylnaphthalene degradation KEGG 9 0.000 1 0.003










beta-Alanine metabolism KEGG 9 0.000 1 0.007










Bile acid biosynthesis KEGG 9 0.000 1 0.004










Glycerolipid metabolism KEGG 9 0.000 1 0.019










Glycolysis / Gluconeogenesis KEGG 9 0.002 1 0.086










Methane metabolism KEGG 9 0.000 1 0.094










Nucleotide Metabolism KEGG 9 0.001 1 0.085










Pantothenate and CoA biosynthesis KEGG 9 0.000 1 0.007










Pyrimidine metabolism KEGG 9 0.000 1 0.027










Pyruvate metabolism KEGG 9 0.002 1 0.077










Tyrosine metabolism KEGG 9 0.000 1 0.027










biosynthesis of phenylpropanoids FunCat 8 0.000 2 0.000










biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine FunCat 8 0.000 2 0.000










detoxification FunCat 8 0.000 2 0.000












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP704A1 / CYP704A2 (At2g44980 / At2g45510)







max. difference between log2-ratios: 1.7











max. difference between log2-ratios excluding lowest and highest 5%: 1.0

















Link to hormones etc. heatmap






there are no co-expressed genes with r>0.5









































































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP704A1 / CYP704A2 (At2g44980 / At2g45510)







max. difference between log2-ratios: 4.5











max. difference between log2-ratios excluding lowest and highest 5%: 1.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






C-compound and carbohydrate metabolism FunCat 14 0.000 3 0.001



auxin biosynthesis TAIR-GO 9 0.000 1 0.000


IAA biosynthesis AraCyc 9 0.000 1 0.000











page created by Juergen Ehlting 06/07/06