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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| Arginine and proline metabolism |
KEGG |
18 |
2 |
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| beta-Alanine metabolism |
KEGG |
18 |
2 |
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| polyamine biosynthesis |
TAIR-GO |
18 |
2 |
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| polyamine biosynthesis I |
AraCyc |
18 |
2 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| polyamine biosynthesis II |
AraCyc |
18 |
2 |
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| polyamine biosynthesis III |
AraCyc |
18 |
2 |
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| spermine biosynthesis I |
AraCyc |
18 |
2 |
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For more information on how these pathway maps were generated please read the methods page |
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| spermine biosynthesis II |
AraCyc |
18 |
2 |
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| Urea cycle and metabolism of amino groups |
KEGG |
18 |
2 |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) |
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CYP705A19 (At3g20100) |
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| max. difference between log2-ratios: |
5.8 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.8 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| pentacyclic triterpenoid biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| Biosynthesis of steroids |
KEGG |
10 |
0.000 |
1 |
0.001 |
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| triterpene biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.001 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
10 |
0.000 |
1 |
0.051 |
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| polyamine biosynthesis |
TAIR-GO |
9 |
0.000 |
1 |
0.000 |
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| polyamine biosynthesis I |
AraCyc |
9 |
0.000 |
1 |
0.001 |
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| polyamine biosynthesis II |
AraCyc |
9 |
0.000 |
1 |
0.000 |
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| polyamine biosynthesis III |
AraCyc |
9 |
0.000 |
1 |
0.000 |
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| spermine biosynthesis I |
AraCyc |
9 |
0.000 |
1 |
0.000 |
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| spermine biosynthesis II |
AraCyc |
9 |
0.000 |
1 |
0.000 |
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| Arginine and proline metabolism |
KEGG |
9 |
0.000 |
1 |
0.001 |
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| beta-Alanine metabolism |
KEGG |
9 |
0.000 |
1 |
0.000 |
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| Urea cycle and metabolism of amino groups |
KEGG |
9 |
0.000 |
1 |
0.000 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) |
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CYP705A19 (At3g20100) |
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| max. difference between log2-ratios: |
4.2 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
1.5 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| Gluconeogenesis from lipids in seeds |
BioPath |
10 |
0.000 |
1 |
0.006 |
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| cutin biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| fatty acid biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| fatty acid oxidation pathway |
AraCyc |
10 |
0.000 |
1 |
0.002 |
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| octane oxidation |
AraCyc |
10 |
0.000 |
1 |
0.001 |
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| Fatty acid metabolism |
KEGG |
10 |
0.000 |
1 |
0.002 |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
10 |
0.000 |
1 |
0.000 |
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| degradation of abscisic acid |
LitPath |
10 |
0.000 |
1 |
0.000 |
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| polyamine biosynthesis |
TAIR-GO |
9 |
0.000 |
1 |
0.000 |
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| polyamine biosynthesis I |
AraCyc |
9 |
0.000 |
1 |
0.004 |
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| polyamine biosynthesis II |
AraCyc |
9 |
0.000 |
1 |
0.002 |
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| polyamine biosynthesis III |
AraCyc |
9 |
0.000 |
1 |
0.001 |
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| spermine biosynthesis I |
AraCyc |
9 |
0.000 |
1 |
0.001 |
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| spermine biosynthesis II |
AraCyc |
9 |
0.000 |
1 |
0.000 |
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| Arginine and proline metabolism |
KEGG |
9 |
0.000 |
1 |
0.002 |
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| beta-Alanine metabolism |
KEGG |
9 |
0.000 |
1 |
0.001 |
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| Urea cycle and metabolism of amino groups |
KEGG |
9 |
0.000 |
1 |
0.001 |
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| ascorbic acid biosynthesis |
BioPath |
8 |
0.000 |
1 |
0.001 |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
8 |
0.016 |
1 |
0.122 |
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| Flavonoid and anthocyanin metabolism |
BioPath |
8 |
0.000 |
1 |
0.004 |
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| Phenylpropanoid Metabolism |
BioPath |
8 |
0.001 |
1 |
0.037 |
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| flavonoid biosynthesis |
TAIR-GO |
8 |
0.000 |
1 |
0.000 |
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| ascorbate glutathione cycle |
AraCyc |
8 |
0.000 |
1 |
0.002 |
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| mRNA synthesis |
FunCat |
8 |
0.000 |
1 |
0.003 |
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| RNA synthesis |
FunCat |
8 |
0.000 |
1 |
0.003 |
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| transcription |
FunCat |
8 |
0.000 |
1 |
0.001 |
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| transcriptional control |
FunCat |
8 |
0.000 |
1 |
0.000 |
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| Ascorbate and aldarate metabolism |
KEGG |
8 |
0.000 |
1 |
0.001 |
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