| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP705A21 (At3g20120) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are no co-expressed pathways common to the 3 data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP705A21 (At3g20120) | |||||||||||||||
| max. difference between log2-ratios: | 4.0 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.9 | |||||||||||||||
| Link to organ heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP705A21 (At3g20120) | |||||||||||||||
| max. difference between log2-ratios: | 2.8 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.6 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to stress heatmap | ||||||||||
| Benzoate degradation via CoA ligation | KEGG | 11 | 0.000 | 2 | 0.003 |
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| Inositol phosphate metabolism | KEGG | 11 | 0.000 | 2 | 0.004 | |||||||||||
| Nicotinate and nicotinamide metabolism | KEGG | 11 | 0.000 | 2 | 0.002 | |||||||||||
| Biosynthesis of Amino Acids and Derivatives | BioPath | 10 | 0.010 | 1 | 0.126 | |||||||||||
| Branched-chain amino acids from aspartate | BioPath | 10 | 0.000 | 1 | 0.004 | |||||||||||
| brassinosteroid biosynthesis | BioPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria | BioPath | 10 | 0.000 | 1 | 0.022 | |||||||||||
| Leaf Glycerolipid Biosynthesis | BioPath | 10 | 0.024 | 1 | 0.136 | |||||||||||
| Leaf Glycerolipid Biosynthesis in Plastid | BioPath | 10 | 0.000 | 1 | 0.018 | |||||||||||
| brassinosteroid biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.001 | |||||||||||
| lipid metabolism | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| phospholipid metabolism | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| response to light | TAIR-GO | 10 | 0.000 | 1 | 0.005 | |||||||||||
| steroid biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.001 | |||||||||||
| brassinosteroid biosynthesis I | AraCyc | 10 | 0.000 | 1 | 0.004 | |||||||||||
| brassinosteroid biosynthesis II | AraCyc | 10 | 0.000 | 1 | 0.002 | |||||||||||
| brassinosteroid biosynthesis III | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| phospholipid biosynthesis II | AraCyc | 10 | 0.000 | 1 | 0.005 | |||||||||||
| triacylglycerol biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| 1- and 2-Methylnaphthalene degradation | KEGG | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Bile acid biosynthesis | KEGG | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Glycine, serine and threonine metabolism | KEGG | 10 | 0.000 | 1 | 0.006 | |||||||||||
| Synthesis of membrane lipids in plastids | AcylLipid | 10 | 0.000 | 1 | 0.001 | |||||||||||
| triterpene, sterol, and brassinosteroid metabolism | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| phosphorylation | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| intracellular signalling | FunCat | 9 | 0.000 | 1 | 0.003 | |||||||||||
| transmembrane signal transduction | FunCat | 9 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP705A21 (At3g20120) | |||||||||||||||
| max. difference between log2-ratios: | 1.8 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.2 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| Oxidative phosphorylation | KEGG | 9 | 0.000 | 1 | 0.002 |
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| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP705A21 (At3g20120) | |||||||||||||||
| max. difference between log2-ratios: | 2.4 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.4 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to mutants heatmap | ||||||||||
| Mo-molybdopterin cofactor biosynthesis | TAIR-GO | 7 | 0.000 | 1 | 0.000 |
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| Folate biosynthesis | KEGG | 7 | 0.000 | 1 | 0.000 | |||||||||||
| page created by Juergen Ehlting | 06/05/06 | |||||||||||||||