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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
63.5 |
15 |
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| pectin metabolism |
BioPath |
33.5 |
11 |
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| Methane metabolism |
KEGG |
30 |
15 |
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| Phenylalanine metabolism |
KEGG |
30 |
15 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| Prostaglandin and leukotriene metabolism |
KEGG |
30 |
15 |
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| Stilbene, coumarine and lignin biosynthesis |
KEGG |
30 |
15 |
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| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
24 |
6 |
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For more information on how these pathway maps were generated please read the methods page |
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| terpenoid metabolism |
LitPath |
24 |
6 |
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| Biosynthesis of prenyl diphosphates |
BioPath |
24 |
3 |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) |
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CYP705A22 (At3g20130) |
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| max. difference between log2-ratios: |
3.5 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
1.8 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
55 |
0.000 |
12 |
0.009 |
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| Phenylpropanoid Metabolism |
BioPath |
30 |
0.000 |
8 |
0.005 |
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| Fructose and mannose metabolism |
KEGG |
26 |
0.000 |
3 |
0.004 |
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| pectin metabolism |
BioPath |
25 |
0.000 |
8 |
0.002 |
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| Biosynthesis of steroids |
KEGG |
21 |
0.000 |
3 |
0.004 |
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| cellulose biosynthesis |
BioPath |
20 |
0.000 |
3 |
0.010 |
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| Glucosyltransferases for benzoic acids |
BioPath |
20 |
0.000 |
2 |
0.002 |
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| Glycan Biosynthesis and Metabolism |
KEGG |
20 |
0.000 |
3 |
0.012 |
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| Methane metabolism |
KEGG |
18 |
0.000 |
9 |
0.000 |
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| Phenylalanine metabolism |
KEGG |
18 |
0.000 |
9 |
0.000 |
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| Prostaglandin and leukotriene metabolism |
KEGG |
18 |
0.000 |
9 |
0.000 |
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| Stilbene, coumarine and lignin biosynthesis |
KEGG |
18 |
0.000 |
9 |
0.000 |
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| hemicellulose biosynthesis |
BioPath |
16 |
0.000 |
2 |
0.003 |
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| Glycerolipid metabolism |
KEGG |
16 |
0.000 |
2 |
0.011 |
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| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
16 |
0.000 |
4 |
0.002 |
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| terpenoid metabolism |
LitPath |
16 |
0.000 |
4 |
0.002 |
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| flavonol biosynthesis |
AraCyc |
15 |
0.000 |
3 |
0.000 |
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| secondary metabolism |
FunCat |
15 |
0.000 |
3 |
0.001 |
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| Biosynthesis of prenyl diphosphates |
BioPath |
14 |
0.000 |
2 |
0.051 |
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| Terpenoid biosynthesis |
KEGG |
14 |
0.000 |
2 |
0.004 |
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| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis |
LitPath |
14 |
0.000 |
2 |
0.009 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
13 |
0.010 |
4 |
0.047 |
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| colanic acid building blocks biosynthesis |
AraCyc |
12 |
0.000 |
2 |
0.011 |
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| dTDP-rhamnose biosynthesis |
AraCyc |
12 |
0.000 |
2 |
0.006 |
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| galactose degradation I |
AraCyc |
12 |
0.000 |
2 |
0.000 |
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| glucose conversion |
AraCyc |
12 |
0.000 |
2 |
0.004 |
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| lactose degradation IV |
AraCyc |
12 |
0.000 |
2 |
0.000 |
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| UDP-glucose conversion |
AraCyc |
12 |
0.000 |
2 |
0.004 |
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| Lipid signaling |
AcylLipid |
12 |
0.000 |
4 |
0.012 |
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| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) |
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CYP705A22 (At3g20130) |
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| max. difference between log2-ratios: |
2.7 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
1.0 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to stress heatmap |
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| Methane metabolism |
KEGG |
12 |
0.000 |
6 |
0.000 |
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| Phenylalanine metabolism |
KEGG |
12 |
0.000 |
6 |
0.000 |
| Prostaglandin and leukotriene metabolism |
KEGG |
12 |
0.000 |
6 |
0.000 |
| Stilbene, coumarine and lignin biosynthesis |
KEGG |
12 |
0.000 |
6 |
0.000 |
| Biosynthesis of prenyl diphosphates |
BioPath |
10 |
0.000 |
1 |
0.016 |
| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
10 |
0.000 |
1 |
0.031 |
| dolichol biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| polyprenyl diphosphate biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.004 |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
8.5 |
0.024 |
3 |
0.054 |
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| pectin metabolism |
BioPath |
8.5 |
0.000 |
3 |
0.003 |
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| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
8 |
0.000 |
2 |
0.006 |
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| terpenoid metabolism |
LitPath |
8 |
0.000 |
2 |
0.007 |
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