Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP705A23 (At3g20140)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are co-expressed pathways in the hormone data set only
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP705A23 (At3g20140)
max. difference between log2-ratios:				3.0
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
						Link to organ heatmap
there are no co-expressed genes with more than 6 annotation points
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP705A23 (At3g20140)
max. difference between log2-ratios:				1.7
max. difference between log2-ratios excluding lowest and highest 5%:				0.6
						Link to stress heatmap
there are no co-expressed genes with r>0.5
Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)						CYP705A23 (At3g20140)
max. difference between log2-ratios:				2.9
max. difference between log2-ratios excluding lowest and highest 5%:				1.6
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Leaf Glycerolipid Biosynthesis	BioPath	37	0.000	6	0.076
Cell Wall Carbohydrate Metabolism	BioPath	32	0.019	12	0.022
pectin metabolism	BioPath	30	0.000	11	0.000
Benzoate degradation via CoA ligation	KEGG	24	0.000	4	0.029
Inositol phosphate metabolism	KEGG	24	0.000	4	0.040
Nicotinate and nicotinamide metabolism	KEGG	24	0.000	4	0.021
Synthesis of membrane lipids in endomembrane system	AcylLipid	23	0.000	4	0.018
ATP synthesis	KEGG	20	0.000	4	0.001
Leaf Glycerolipid Biosynthesis in cytosol / ER	BioPath	19	0.000	2	0.025
Leaf Glycerolipid Biosynthesis in Plastid	BioPath	18	0.000	4	0.007
glycolysis and gluconeogenesis	FunCat	18	0.000	3	0.098
intracellular signalling	FunCat	16	0.000	2	0.049
electron transport	TAIR-GO	14	0.000	2	0.001
Synthesis of fatty acids in plastids	AcylLipid	14	0.002	3	0.036
transport	FunCat	12	0.000	4	0.000
transport facilitation	FunCat	12	0.000	4	0.000
Biosynthesis of steroids	KEGG	12	0.003	3	0.012
Terpenoid biosynthesis	KEGG	12	0.000	3	0.001
TCA cycle variation VII	AraCyc	11	0.000	2	0.116
TCA cycle variation VIII	AraCyc	11	0.000	2	0.050
Phosphatidylinositol signaling system	KEGG	11	0.000	2	0.028
Signal Transduction	KEGG	11	0.000	2	0.030
Transcription	KEGG	11	0.003	4	0.016
Pathways co-expressed in the Mutant data set (with more than 60 annotation points)						CYP705A23 (At3g20140)
max. difference between log2-ratios:				1.3
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
						Link to mutants heatmap
there are no co-expressed genes with more than 6 annotation points
page created by Juergen Ehlting	06/05/06