| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP705A27 (At1g50520) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are no co-expressed pathways common in the 3 data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) | CYP705A27 (At1g50520) | |||||||||||||||
| max. difference between log2-ratios: | 2.6 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.3 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| Cell Wall Carbohydrate Metabolism | BioPath | 45 | 0.000 | 11 | 0.004 |
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| pectin metabolism | BioPath | 25 | 0.000 | 8 | 0.000 | |||||||||||
| Phenylpropanoid Metabolism | BioPath | 24 | 0.000 | 6 | 0.017 | |||||||||||
| cellulose biosynthesis | BioPath | 20 | 0.000 | 3 | 0.005 | |||||||||||
| Glucosyltransferases for benzoic acids | BioPath | 20 | 0.000 | 2 | 0.001 | |||||||||||
| Glycan Biosynthesis and Metabolism | KEGG | 20 | 0.000 | 3 | 0.005 | |||||||||||
| hemicellulose biosynthesis | BioPath | 16 | 0.000 | 2 | 0.002 | |||||||||||
| Fructose and mannose metabolism | KEGG | 16 | 0.000 | 2 | 0.014 | |||||||||||
| Glycerolipid metabolism | KEGG | 16 | 0.000 | 2 | 0.005 | |||||||||||
| Biosynthesis of steroids | KEGG | 15 | 0.000 | 3 | 0.002 | |||||||||||
| triterpene, sterol, and brassinosteroid metabolism | LitPath | 15 | 0.000 | 4 | 0.008 | |||||||||||
| secondary metabolism | FunCat | 13 | 0.000 | 2 | 0.012 | |||||||||||
| trans-zeatin biosynthesis | AraCyc | 12 | 0.000 | 2 | 0.000 | |||||||||||
| Methane metabolism | KEGG | 12 | 0.000 | 6 | 0.000 | |||||||||||
| Phenylalanine metabolism | KEGG | 12 | 0.000 | 6 | 0.000 | |||||||||||
| Prostaglandin and leukotriene metabolism | KEGG | 12 | 0.000 | 6 | 0.000 | |||||||||||
| Stilbene, coumarine and lignin biosynthesis | KEGG | 12 | 0.000 | 6 | 0.000 | |||||||||||
| mono-/sesqui-/di-terpene biosynthesis | LitPath | 12 | 0.000 | 3 | 0.003 | |||||||||||
| terpenoid metabolism | LitPath | 12 | 0.000 | 3 | 0.003 | |||||||||||
| flavonol biosynthesis | AraCyc | 11 | 0.000 | 2 | 0.000 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP705A27 (At1g50520) | |||||||||||||||
| max. difference between log2-ratios: | 1.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.8 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to stress heatmap | ||||||||||
| Cell Wall Carbohydrate Metabolism | BioPath | 14.5 | 0.000 | 3 | 0.019 |
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| cellulose biosynthesis | BioPath | 10 | 0.000 | 1 | 0.009 | |||||||||||
| hemicellulose biosynthesis | BioPath | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Fructose and mannose metabolism | KEGG | 10 | 0.000 | 1 | 0.003 | |||||||||||
| Glycan Biosynthesis and Metabolism | KEGG | 10 | 0.000 | 1 | 0.005 | |||||||||||
| Glycerolipid metabolism | KEGG | 10 | 0.000 | 1 | 0.001 | |||||||||||
| acyl-CoA binding | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| lipid transport | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| Miscellaneous acyl lipid metabolism | AcylLipid | 9 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP705A27 (At1g50520) | |||||||||||||||
| max. difference between log2-ratios: | 2.0 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.0 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| Lipid signaling | AcylLipid | 11 | 0.000 | 2 | 0.000 |
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| lipases pathway | AraCyc | 9 | 0.000 | 1 | 0.000 | |||||||||||
| degradation | FunCat | 9 | 0.000 | 1 | 0.001 | |||||||||||
| intracellular signalling | FunCat | 9 | 0.000 | 1 | 0.003 | |||||||||||
| lipid, fatty acid and isoprenoid degradation | FunCat | 9 | 0.000 | 1 | 0.001 | |||||||||||
| second messenger mediated signal transduction | FunCat | 9 | 0.000 | 1 | 0.000 | |||||||||||
| mono-/sesqui-/di-terpene biosynthesis | LitPath | 8 | 0.000 | 2 | 0.001 | |||||||||||
| terpenoid metabolism | LitPath | 8 | 0.000 | 2 | 0.001 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP705A27 (At1g50520) | |||||||||||||||
| max. difference between log2-ratios: | 2.1 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.1 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| page created by Juergen Ehlting | 06/05/06 | |||||||||||||||