| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP705A3 (At4g15360) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are no co-expressed pathways common in the 2 data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP705A3 (At4g15360) | |||||||||||||||
| max. difference between log2-ratios: | 4.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.0 | |||||||||||||||
| Link to organ heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP705A3 (At4g15360) | |||||||||||||||
| max. difference between log2-ratios: | 3.2 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.5 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to stress heatmap | ||||||||||
| pentacyclic triterpenoid biosynthesis | TAIR-GO | 7 | 0.000 | 1 | 0.000 |
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| secondary metabolism | FunCat | 7 | 0.000 | 1 | 0.000 | |||||||||||
| triterpene biosynthesis | LitPath | 7 | 0.000 | 1 | 0.000 | |||||||||||
| triterpene, sterol, and brassinosteroid metabolism | LitPath | 7 | 0.000 | 1 | 0.010 | |||||||||||
| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP705A3 (At4g15360) | |||||||||||||||
| max. difference between log2-ratios: | 2.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.5 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| Intermediary Carbon Metabolism | BioPath | 10 | 0.000 | 1 | 0.000 |
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| glucose metabolism | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| pentose-phosphate shunt | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| pentose-phosphate shunt, oxidative branch | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| oxidative branch of the pentose phosphate pathway | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| C-compound and carbohydrate metabolism | FunCat | 10 | 0.000 | 1 | 0.007 | |||||||||||
| pentose-phosphate pathway | FunCat | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Glutathione metabolism | KEGG | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Pentose phosphate pathway | KEGG | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP705A3 (At4g15360) | |||||||||||||||
| max. difference between log2-ratios: | 3.3 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.7 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| page created by Juergen Ehlting | 06/06/06 | |||||||||||||||