Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP705A30 (At3g20940)	save all data as Tab Delimited Table
_________________________________________
Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways common in the 2 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP705A30 (At3g20940)
max. difference between log2-ratios:				3.7
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Biosynthesis of steroids	KEGG	21	0.000	3	0.000
Biosynthesis of prenyl diphosphates	BioPath	14	0.000	2	0.001
Terpenoid biosynthesis	KEGG	14	0.000	2	0.000
prenyl diphosphate (GPP,FPP, GGPP) biosynthesis	LitPath	14	0.000	2	0.002
triterpene, sterol, and brassinosteroid metabolism	LitPath	11	0.001	3	0.023
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	10	0.000	1	0.031
mono-/sesqui-/di-terpene biosynthesis	LitPath	8	0.000	2	0.014
terpenoid metabolism	LitPath	8	0.000	2	0.016
pentacyclic triterpenoid biosynthesis	TAIR-GO	7	0.000	1	0.000
secondary metabolism	FunCat	7	0.000	1	0.000
triterpene biosynthesis	LitPath	7	0.000	1	0.012
pectin metabolism	BioPath	6.5	0.001	2	0.026
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP705A30 (At3g20940)
max. difference between log2-ratios:				3.5
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
						Link to stress heatmap
there are no co-expressed genes with r>0.5
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP705A30 (At3g20940)
max. difference between log2-ratios:				5.7
max. difference between log2-ratios excluding lowest and highest 5%:				1.1
						Link to hormones etc. heatmap
there are no co-expressed genes with more than 6 annotation points
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP705A30 (At3g20940)
max. difference between log2-ratios:				7.6
max. difference between log2-ratios excluding lowest and highest 5%:				1.2
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Leaf Glycerolipid Biosynthesis	BioPath	8	0.000	2	0.017
Leaf Glycerolipid Biosynthesis in Plastid	BioPath	8	0.000	2	0.001
Synthesis of fatty acids in plastids	AcylLipid	8	0.000	2	0.000
page created by Juergen Ehlting	06/05/06