| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP705A33 (At3g20960) | save all data as Tab Delimited Table | |||||||||||||||
| _________________________________________ |
|
|||||||||||||||
| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are co-expressed pathways in the organ data set only | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP705A33 (At3g20960) | |||||||||||||||
| max. difference between log2-ratios: | 3.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.3 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| Methane metabolism | KEGG | 10 | 0.000 | 4 | 0.000 |
|
||||||||||
| calmodulin binding | TAIR-GO | 9 | 0.000 | 1 | 0.001 | |||||||||||
| defense response | TAIR-GO | 9 | 0.000 | 1 | 0.002 | |||||||||||
| defense response to fungi | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| ethylene mediated signaling pathway | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| jasmonic acid and ethylene-dependent systemic resistance | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| glutamate degradation I | AraCyc | 9 | 0.000 | 1 | 0.000 | |||||||||||
| Alanine and aspartate metabolism | KEGG | 9 | 0.000 | 1 | 0.026 | |||||||||||
| Aminosugars metabolism | KEGG | 9 | 0.000 | 1 | 0.012 | |||||||||||
| beta-Alanine metabolism | KEGG | 9 | 0.000 | 1 | 0.011 | |||||||||||
| Butanoate metabolism | KEGG | 9 | 0.000 | 1 | 0.017 | |||||||||||
| Glutamate metabolism | KEGG | 9 | 0.000 | 1 | 0.048 | |||||||||||
| Taurine and hypotaurine metabolism | KEGG | 9 | 0.000 | 1 | 0.001 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP705A33 (At3g20960) | |||||||||||||||
| max. difference between log2-ratios: | 3.2 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.4 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
|
|||||||||||||||
| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP705A33 (At3g20960) | |||||||||||||||
| max. difference between log2-ratios: | 3.6 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.0 | |||||||||||||||
| Link to hormones etc. heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
|
|||||||||||||||
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP705A33 (At3g20960) | |||||||||||||||
| max. difference between log2-ratios: | 3.5 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.1 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
|
|||||||||||||||
| page created by Juergen Ehlting | 06/05/06 | |||||||||||||||