Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP705A8 (At2g27000)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are co-expressed pathways in the organ data set only
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP705A8 (At2g27000)
max. difference between log2-ratios:				6.3
max. difference between log2-ratios excluding lowest and highest 5%:				3.5
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Cell Wall Carbohydrate Metabolism	BioPath	51	0.000	12	0.022
Methane metabolism	KEGG	46	0.000	21	0.000
Phenylalanine metabolism	KEGG	46	0.000	21	0.000
Prostaglandin and leukotriene metabolism	KEGG	46	0.000	21	0.000
Stilbene, coumarine and lignin biosynthesis	KEGG	46	0.000	21	0.000
Phenylpropanoid Metabolism	BioPath	34	0.000	9	0.003
pectin metabolism	BioPath	29	0.000	9	0.001
Biosynthesis of steroids	KEGG	25	0.000	4	0.008
Glucosyltransferases for benzoic acids	BioPath	20	0.000	2	0.002
flavonol biosynthesis	AraCyc	20	0.000	5	0.000
triterpene, sterol, and brassinosteroid metabolism	LitPath	19	0.000	6	0.010
Fructose and mannose metabolism	KEGG	18	0.000	2	0.129
Terpenoid biosynthesis	KEGG	18	0.000	3	0.003
lactose degradation IV	AraCyc	16	0.000	3	0.000
secondary metabolism	FunCat	16	0.000	4	0.001
mono-/sesqui-/di-terpene biosynthesis	LitPath	16	0.000	4	0.005
terpenoid metabolism	LitPath	16	0.000	4	0.005
detoxification	FunCat	15	0.000	8	0.000
Biosynthesis of prenyl diphosphates	BioPath	14	0.000	2	0.067
Flavonoid and anthocyanin metabolism	BioPath	14	0.000	7	0.000
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	14	0.007	2	0.152
prenyl diphosphate (GPP,FPP, GGPP) biosynthesis	LitPath	14	0.000	2	0.017
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP705A8 (At2g27000)
max. difference between log2-ratios:				6.6
max. difference between log2-ratios excluding lowest and highest 5%:				0.9
						Link to stress heatmap
there are no co-expressed genes with r>0.5
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP705A8 (At2g27000)
max. difference between log2-ratios:				4.3
max. difference between log2-ratios excluding lowest and highest 5%:				2.6
						Link to hormones etc. heatmap
there are no co-expressed genes with more than 6 annotation points
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP705A8 (At2g27000)
max. difference between log2-ratios:				7.3
max. difference between log2-ratios excluding lowest and highest 5%:				2.7
						Link to mutants heatmap
there are no co-expressed genes with r>0.5
page created by Juergen Ehlting	06/06/06