Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP706A3 (At5g44620) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are no co-expressed pathways common to all data sets



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 9 annotation points)
CYP706A3 (At5g44620)







max. difference between log2-ratios: 7.5











max. difference between log2-ratios excluding lowest and highest 5%: 6.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Cell Wall Carbohydrate Metabolism BioPath 31 0.000 8 0.001


Miscellaneous acyl lipid metabolism AcylLipid 26 0.000 4 0.197

Fatty acid elongation and wax and cutin metabolism AcylLipid 24 0.000 5 0.001

Gluconeogenesis from lipids in seeds BioPath 20 0.000 2 0.020

cellulose biosynthesis AraCyc 20 0.000 5 0.000

fatty acid oxidation pathway AraCyc 20 0.000 2 0.000

octane oxidation AraCyc 20 0.000 2 0.000

fatty acid metabolism TAIR-GO 18 0.000 2 0.000

pectin metabolism BioPath 14 0.000 6 0.000

Benzoate degradation via CoA ligation KEGG 11.5 0.000 2 0.004

Inositol phosphate metabolism KEGG 11.5 0.000 2 0.005

Nicotinate and nicotinamide metabolism KEGG 11.5 0.000 2 0.003

Synthesis of membrane lipids in endomembrane system AcylLipid 11 0.036 3 0.022










cutin biosynthesis TAIR-GO 10 0.000 1 0.000










fatty acid biosynthesis TAIR-GO 10 0.000 1 0.003










Fatty acid metabolism KEGG 10 0.000 1 0.007










mono-/sesqui-/di-terpene biosynthesis LitPath 10 0.000 1 0.019










sequiterpene biosynthesis LitPath 10 0.000 1 0.000










terpenoid metabolism LitPath 10 0.000 1 0.020












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP706A3 (At5g44620)







max. difference between log2-ratios: 4.5











max. difference between log2-ratios excluding lowest and highest 5%: 1.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






fatty acid metabolism TAIR-GO 9 0.000 1 0.000
Fatty acid elongation and wax and cutin metabolism AcylLipid 9 0.000 1 0.000


































Pathways co-expressed in the Hormone etc. data set (with more than 9 annotation points)
CYP706A3 (At5g44620)







max. difference between log2-ratios: 5.7











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Cell Wall Carbohydrate Metabolism BioPath 105 0.000 26 0.000





pectin metabolism BioPath 75 0.000 21 0.000




mono-/sesqui-/di-terpene biosynthesis LitPath 54 0.000 6 0.000




terpenoid metabolism LitPath 54 0.000 6 0.000




Miscellaneous acyl lipid metabolism AcylLipid 48 0.000 18 0.000




Starch and sucrose metabolism KEGG 42 0.000 6 0.000




Fatty acid elongation and wax and cutin metabolism AcylLipid 21 0.000 6 0.026




sexual reproduction TAIR-GO 20 0.000 5 0.000




monoterpene biosynthesis LitPath 20 0.000 2 0.000




sucrose metabolism BioPath 16 0.000 2 0.006




biogenesis of cell wall FunCat 16 0.000 7 0.000




Galactose metabolism KEGG 16 0.000 2 0.003




C-compound and carbohydrate utilization FunCat 14 0.000 2 0.000










fatty acid metabolism TAIR-GO 13 0.000 2 0.003










Oxidative phosphorylation KEGG 12 0.000 3 0.006










jasmonic acid biosynthesis TAIR-GO 10 0.000 1 0.020










jasmonic acid mediated signaling pathway TAIR-GO 10 0.000 1 0.000










jasmonic acid metabolism TAIR-GO 10 0.000 1 0.000










monoterpenoid biosynthesis TAIR-GO 10 0.000 1 0.001










N-terminal protein myristoylation TAIR-GO 10 0.000 1 0.007










pentacyclic triterpenoid biosynthesis TAIR-GO 10 0.000 1 0.004










response to wounding TAIR-GO 10 0.000 1 0.026










jasmonic acid biosynthesis AraCyc 10 0.000 1 0.003










monoterpene biosynthesis AraCyc 10 0.000 1 0.000










plant monoterpene biosynthesis AraCyc 10 0.000 1 0.000










C-compound, carbohydrate catabolism FunCat 10 0.000 3 0.005










Biosynthesis of steroids KEGG 10 0.000 1 0.077










sequiterpene biosynthesis LitPath 10 0.000 1 0.001










triterpene biosynthesis LitPath 10 0.000 1 0.032





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP706A3 (At5g44620)







max. difference between log2-ratios: 5.0











max. difference between log2-ratios excluding lowest and highest 5%: 1.3











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 10 0.000 1 0.011



sequiterpene biosynthesis LitPath 10 0.000 1 0.000










terpenoid metabolism LitPath 10 0.000 1 0.012



























page created by Juergen Ehlting 06/05/06