| Co-Expression Analysis of: | CYP706A4 (At4g12300) | Institut de Biologie Moléculaire des Plantes |
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| ________________________ | _____________________________________________ | CYPedia Home | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Hormones etc. Data Set | save / view heatmap as: | OpenOffice TablepenOffice Table | annotation details for co-expressed genes can be found to the right of the heatmap | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MS Excel Table | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| save / view all data as: | Tab delimited Table | For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) | magnitude of change [log2(treatment/control)] | 0 | 0.3 | 0.6 | 0.9 | 1.2 | 1.5 | 1.8 | 2.1 | 2.4 | 2.7 | >2.99 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| greater than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| less than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Locus | r-value | Name | Description | ethylene, 3h, petiole (13) | mock, 30min, seedling (110) | IAA, 30min, seedling (110) | IAA, 1h, seedling (110) | IAA, 3h, seedling (110) | zeatin, 30min, seedling (110) | zeatin, 1h, seedling (110) | zeatin, 3h, seedling (110) | GA3, 30min, seedling (110) | GA3, 1h, seedling (110) | GA3, 3h, seedling (110) | ABA, 30min, seedling (110) | ABA, 1h, seedling (110) | ABA, 3h, seedling (110) | MJ, 30min, seedling (110) | MJ, 1h, seedling (110) | MJ, 3h, seedling (110) | ACC, 30min, seedling (110) | ACC, 1h, seedling (110) | ACC, 3h, seedling (110) | BL, 30min, seedling (110) | BL, 1h, seedling (110) | BL, 3h, seedling (110) | ABA, 3 uM, imbided seed (116) | ABA, 30 uM, imbided seed (116) | GA, 3h, imbibed seed (119) | GA, 6h, imbibed seed (119) | GA, 9h, imbibed seed (119) | GA, 3h, imbibed seed (134) | GA, 6h, imbibed seed (134) | GA, 9h, imbibed seed (134) | GA, 30min, whole plant (99) | GA, 60min, whole plant (99) | GA, 3h, whole plant (99) | IAA, 0.1uM, 1h, seedling (144) | IAA, 0.1uM, 3h, seedling (144) | IAA, 1uM, 1h, seedling (144) | IAA, 1uM, 3h, seedling (144) | ppi, 3h, seedling (113) | ppi, 12h, seedling (113) | uni, 3h, seedling (113) | uni, 12h, seedling (113) | brz220, 3h, seedling (113) | brz220, 12h, seedling (113) | brz91, 3h, seedling (113) | brz91, 12h, seedling (113) | pac, 3h, seedling (113) | pac, 12h, seedling (113) | px, 3h, seedling (113) | px, 12h, seedling (113) | pno8, 3h, seedling (113) | pno8, 12h, seedling (113) | ibup, 3h, seedling (113) | B9, 3h, seedling (113) | AgNO3, 3h, seedling (113) | AVG, 3h, seedling (113) | Sal, 3h, seedling (113) | MG132, 3h, seedling (113) | 246T, 3h, seedling (113) | PCIB, 3h, seedling (113) | TIBA, 3h, seedling (113) | NPA, 3h, seedling (113) | CHX, 3h, seedling (113) | Colm, 3h, seedling (113) | ColPNO8, 3h, seedling (113) | ColBrz, 3h, seedling (113) | glucose, 8h, seedling (14) | sucrose, 8h, seedling (15) | deoxyglucose, 8h_seedling (14) | methylglucose, 8h, seedling (14) | K depleted, whole rosette (97) | K depleted, root (97) | Sulfate depleted, 2h, root (112) | Sulfate depleted, 4h, root (112) | Sulfate depleted, 8h, root (112) | Sulfate depleted, 12h, root (112) | Sulfate depleted, 24h, root (112) | mannitol, 8h, seedling (14) | CO2, 1000ppm, guard cell enriched (11) | CO2, 1000ppm, mature leaf (11) | CO2, high light, whole rosette (95) | CO2, medium light, whole rosette (95) | CO2, low light, whole rosette (95) | CO2, 2h, juvenile leaf (151) | CO2, 4h, juvenile leaf (151) | CO2, 6h, juvenile leaf (151) | CO2, 12h, juvenile leaf (151) | CO2, 24h, juvenile leaf (151) | CO2, 48h, juvenile leaf (151) | dark, 45min, seedling (109) | dark, 4h, seedling (109) | far red, 45min, seedling (109) | far red, 4h, seedling (109) | red pulse1, seedling (109) | red pulse2, seedling (109) | red, 45min, seedling (109) | red, 4h, seedling (109) | blue, 45min, seedling (109) | blue, 4h, seedling (109) | UV-A pulse1, seedling (109) | UV-A pulse2, seedling (109) | UV-AB pulse1, seedling (109) | UV-AB pulse2, seedling (109) | UV-A, 18h, mature leaf (72) | UV-B, 18h, mature leaf (72) | Locus | Probeset | Name | Description | Annotation score | GO.keywords | FunCat keywords | AraCyc annotations | KEGG annotations | BioPath annotations | AcylLipid category | Literature annotations | Gene family | 90% quantile of DE | max. DE |
| At4g12300 | 1.000 | CYP706A4 | cytochrome P450 family protein, similar to flavonoid 3',5'-hydroxylase - Campanula medium | -0.48 | -0.03 | -0.1 | 0.1 | -0.09 | 0.03 | 0.17 | -0.11 | 0 | 0 | 0.12 | 0.18 | 0.01 | 0.41 | 0.27 | 0.38 | 0.19 | -0.04 | 0.17 | -0.03 | 0.46 | 0.39 | 0.09 | 0.08 | 0.05 | 0.41 | -0.01 | 0.55 | 0.41 | -0.01 | 0.55 | -0.68 | -0.36 | -0.36 | 0.15 | 0.09 | -0.09 | -0.33 | 0.1 | -0.25 | -0.12 | -0.12 | -0.05 | -0.06 | 0.16 | 0.17 | -0.2 | -0.08 | 0.26 | 0.14 | 0.28 | 0 | 0.2 | 0.16 | 0.48 | 0.12 | -0.23 | 0.02 | 0.05 | 0.08 | 0.42 | 0.14 | -1.48 | -0.14 | 0.43 | 0.1 | 0.23 | 0.06 | 0.33 | 0.1 | -0.05 | 0.13 | -0.11 | 0.06 | 0.03 | -0.18 | 0.12 | -0.07 | -0.09 | -0.38 | 0.42 | -0.25 | -0.23 | 0.07 | -0.1 | -0.07 | -0.16 | -0.31 | -0.14 | -0.13 | -0.21 | -0.14 | 0.01 | -0.08 | -0.09 | -0.09 | 0 | -0.09 | -0.28 | -0.07 | -0.18 | -0.16 | -0.53 | -0.06 | -0.38 | At4g12300 | 254834_at | CYP706A4 | cytochrome P450 family protein, similar to flavonoid 3',5'-hydroxylase - Campanula medium | 1 | biosynthesis of secondary products derived from primary amino acids | biosynthesis of glycosinolates and derivatives | cytochrome P450 family | 0.79 | 2.02 | ||||||
| At3g02360 | 0.579 | 6-phosphogluconate dehydrogenase family protein | -0.15 | -0.01 | -0.07 | 0.04 | -0.05 | -0.02 | -0.07 | -0.09 | 0.03 | 0.07 | -0.04 | -0.02 | -0.03 | 0.3 | -0.15 | -0.06 | -0.01 | -0.07 | -0.03 | 0.06 | -0.01 | 0.01 | -0.14 | -0.09 | -0.02 | -0.01 | 0.05 | 0.26 | -0.01 | 0.05 | 0.26 | -0.25 | -0.44 | -0.28 | 0.07 | 0.1 | 0.12 | -0.25 | 0.21 | -0.03 | 0.28 | 0.03 | 0.24 | -0.04 | 0.11 | 0.01 | 0.25 | -0.07 | -0.08 | -0.05 | 0.32 | -0.12 | 0.23 | 0.15 | 1.02 | 0.2 | 0.09 | 0.18 | 0.34 | 0 | 0.45 | 0.26 | -0.74 | 0.16 | 0.28 | 0.17 | -0.1 | 0.3 | -0.09 | -0.14 | 0.27 | -0.14 | -0.13 | 0.16 | -0.05 | -0.21 | -0.04 | -0.22 | -0.09 | -0.12 | 0.3 | 0.07 | -0.2 | -0.01 | -0.02 | 0.02 | -0.13 | 0.07 | 0.03 | -0.12 | -0.26 | -0.25 | 0.04 | -0.2 | -0.26 | -0.16 | -0.08 | -0.17 | 0.1 | -0.11 | -0.33 | -0.14 | -0.08 | -0.31 | -0.08 | At3g02360 | 256328_at | 6-phosphogluconate dehydrogenase family protein | 2 | C-compound and carbohydrate metabolism | pentose-phosphate pathway | oxidative branch of the pentose phosphate pathway | superpathway of gluconate degradation | Pentose phosphate pathway | Intermediary Carbon Metabolism | 0.56 | 1.77 | ||||||
| At1g68530 | 0.534 | CUT1 | very-long-chain fatty acid condensing enzyme (CUT1); required for cuticular wax biosynthesis and pollen fertility; involved in wax biosynthesis; required for elongation of C24 very-long-chain fatty acids | -0.77 | 0.12 | 0.05 | -0.18 | -0.88 | 0.13 | 0 | -0.05 | 0.18 | 0.26 | 0.17 | 0.42 | 0.53 | 1.25 | 0.36 | 0.31 | 0.51 | 0.36 | 0.13 | -0.32 | 0.22 | 0.28 | -0.12 | -0.02 | -0.51 | 0.67 | 0.11 | 1.11 | 0.67 | 0.11 | 1.11 | 0.13 | 0.31 | 0.35 | -0.08 | -0.27 | -0.18 | -0.73 | -0.24 | -0.05 | -0.14 | 0.18 | -0.31 | -0.14 | -0.1 | 0.36 | -0.2 | 0.08 | 0.23 | 0.47 | -0.07 | 0.6 | 0.18 | -0.1 | 0.05 | 0.25 | -0.37 | -0.36 | -0.27 | -0.2 | -0.28 | -0.09 | -1.91 | 0.17 | 0.03 | -0.18 | -0.19 | 0.28 | -0.41 | -0.2 | -0.3 | -0.02 | -0.32 | -0.1 | -0.03 | -0.1 | 0.03 | -0.21 | 0.17 | -0.3 | 0 | -0.12 | -0.18 | 0.01 | 0.05 | 0.23 | 0.13 | 0.08 | 0.18 | 0.2 | -0.08 | 0.06 | 0.05 | 0.01 | 0 | 0.08 | 0.11 | 0.19 | 0.01 | 0.15 | 0.09 | -0.01 | -0.04 | -0.08 | -2.72 | At1g68530 | 260267_at | CUT1 | very-long-chain fatty acid condensing enzyme (CUT1); required for cuticular wax biosynthesis and pollen fertility; involved in wax biosynthesis; required for elongation of C24 very-long-chain fatty acids | 8 | very-long-chain fatty acid metabolism | cuticle biosynthesis | wax biosynthesis | epicuticular wax biosynthesis | acetyl-CoA assimilation | glyoxylate cycle | TCA cycle variation IV | TCA cycle -- aerobic respiration | serine-isocitrate lyase pathway | TCA cycle variation VIII | Fatty acid elongation and wax and cutin metabolism | 1.07 | 3.97 | |||||
| At3g10370 | 0.526 | glycerol-3-phosphate dehydrogenase, putative | -0.21 | -0.12 | -0.16 | 0.15 | -0.31 | -0.24 | 0.06 | -0.03 | -0.18 | -0.12 | -0.12 | 0.14 | -0.06 | 0.6 | -0.02 | 0.35 | 0.02 | -0.01 | 0.38 | -0.2 | 0.21 | 0.47 | 0.28 | -0.06 | 0.09 | 0.15 | 0.97 | 1.12 | 0.15 | 0.97 | 1.12 | -0.31 | -0.31 | -0.23 | -0.2 | -0.21 | -0.28 | -0.52 | 0.14 | 0.12 | 0.1 | -0.12 | 0.22 | -0.04 | 0.1 | 0.34 | 0.13 | 0.02 | 0.11 | 0.11 | 0.25 | 0.42 | 0.2 | 0.14 | 0.3 | 0.27 | -0.04 | 0.31 | 0.23 | 0.11 | 0.49 | 0.13 | -0.4 | 0 | 0.21 | 0 | -0.04 | -0.16 | -0.04 | -0.04 | -0.18 | -0.08 | -0.09 | -0.36 | -0.86 | 0.31 | 0.32 | -0.04 | -0.72 | -0.73 | -0.15 | 0.06 | -0.26 | -0.05 | 0.03 | -0.24 | 0.06 | -0.01 | -0.05 | -0.28 | -0.13 | -0.31 | -0.04 | -0.39 | -0.09 | -0.49 | 0.12 | -0.19 | -0.1 | -0.27 | 0.04 | -0.02 | -0.3 | -0.68 | -0.78 | At3g10370 | 259146_at | glycerol-3-phosphate dehydrogenase, putative | 10 | lipid, fatty acid and isoprenoid biosynthesis | phospholipid biosynthesis | glycolysis and gluconeogenesis | glycerol degradation II | glycerol metabolism | aerobic respiration -- electron donors reaction list | Glycerophospholipid metabolism | metabolism of acyl-lipids in mitochondria | 1.01 | 1.99 | ||||||
| At4g34920 | 0.518 | contains weak similarity to 1-phosphatidylinositol phosphodiesterase (Listeria monocytogenes) | -0.31 | 0.04 | -0.1 | -0.34 | -0.03 | -0.52 | -0.1 | -0.77 | -0.11 | 0.34 | 0.11 | -0.12 | 0.26 | 0.73 | 0.46 | 0.94 | 0.66 | 0.02 | 0.12 | 0.27 | -0.23 | 0.36 | -0.28 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | -0.54 | 0.28 | -0.2 | -0.43 | -0.28 | -0.15 | -0.23 | -0.31 | 0.36 | 0.19 | 0.49 | 0.09 | 0.3 | -0.25 | 0.83 | -0.09 | 0.62 | 0.33 | 0.2 | -0.15 | 0.48 | 0.03 | 0.19 | 0.43 | -0.03 | -0.17 | -0.53 | -0.41 | 0.21 | 0.4 | -0.13 | -2.39 | -0.1 | 0.17 | 0.06 | 0.03 | -0.56 | 0.04 | 0.19 | -0.39 | 0.41 | -0.15 | 0.02 | 0.37 | 0.12 | -0.17 | 0.22 | -0.71 | -1.26 | 0.46 | 0.33 | -0.46 | -0.24 | 0.01 | 0.28 | 0.44 | 0.06 | 0.02 | 0.06 | -0.39 | -0.03 | 0.01 | -0.16 | -0.21 | 0 | 0.08 | 0.18 | 0.05 | -0.03 | -0.25 | 0.1 | 0.19 | 0.42 | 0 | At4g34920 | 253220_s_at | contains weak similarity to 1-phosphatidylinositol phosphodiesterase (Listeria monocytogenes) | 2 | lipases pathway | Lipid signaling | 1.03 | 3.34 | ||||||||
| At2g40890 | 0.517 | C3'H, CYP98A3 | encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis. | -0.03 | 0.05 | -0.1 | -0.2 | -0.37 | -0.08 | -0.07 | -0.23 | -0.14 | 0.1 | -0.02 | -0.21 | -0.13 | 0.47 | -0.36 | 0.02 | -0.08 | -0.02 | 0.04 | 0.21 | -0.14 | 0.08 | -0.11 | 0.13 | 0.17 | 0.17 | -0.03 | 0.07 | 0.17 | -0.03 | 0.07 | -0.16 | -0.14 | -0.2 | -0.11 | -0.12 | -0.1 | -0.57 | 0.09 | 0.08 | 0.24 | 0.18 | 0.21 | 0.05 | 0.24 | 0.11 | 0.25 | 0.14 | -0.06 | 0.01 | 0.34 | 0.07 | 0.25 | 0.26 | 0.15 | 0.17 | 0.42 | 0.08 | 0.23 | 0.07 | 0.22 | 0.15 | -2.13 | -0.1 | -0.17 | -0.35 | 0.24 | 0.7 | 0.09 | 0.22 | -0.19 | 0.13 | 0.11 | 0.12 | 0.03 | 0.12 | 0.01 | 0.08 | 0.16 | 0.18 | 0.01 | -0.32 | 0.03 | 0.15 | -0.04 | -0.22 | 0.11 | 0.06 | -0.02 | 0.08 | -0.5 | 0.04 | 0.2 | -0.06 | -0.38 | 0.02 | -0.07 | 0.09 | -0.08 | 0.01 | -0.47 | -0.14 | -0.1 | 0.13 | 0.28 | At2g40890 | 245101_at | C3'H, CYP98A3 | encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis. | 10 | p-coumarate 3-hydroxylase activity | monooxygenase activity | phenylpropanoid biosynthesis | lignin biosynthesis | suberin biosynthesis | lignin biosynthesis | phenylpropanoid biosynthesis | Ascorbate and aldarate metabolism | Stilbene, coumarine and lignin biosynthesis | gamma-Hexachlorocyclohexane degradation | Fluorene degradation | Phenylpropanoid Metabolism | core phenylpropanoid metabolism | Phenylpropanoid pathway | cytochrome P450 family, 3’-hydroxylase for p-coumaryl shikimic/quinic acids, phenylpropanoid metabolism | 0.63 | 2.83 | ||
| At3g60820 | 0.504 | PBF1 | 20S proteasome beta subunit F1 (PBF1) | -0.06 | -0.06 | -0.01 | -0.18 | -0.01 | -0.01 | -0.04 | -0.05 | 0.05 | 0.03 | 0.05 | -0.01 | -0.04 | -0.12 | 0.06 | -0.02 | -0.14 | 0.08 | 0.07 | -0.03 | 0.15 | 0.09 | -0.06 | -0.11 | -0.18 | 0.02 | 0.08 | 0.07 | 0.02 | 0.08 | 0.07 | -0.16 | -0.24 | -0.4 | -0.08 | 0.03 | -0.03 | -0.51 | 0.28 | 0.01 | 0.25 | 0.12 | 0.3 | 0.18 | 0.14 | 0.12 | 0.14 | -0.08 | -0.26 | 0.1 | 0.15 | 0.16 | 0.11 | 0.15 | 0.22 | 0.18 | 0.03 | 0.33 | 0.12 | 0.2 | 0.11 | -0.03 | -1.15 | 0.11 | 0.18 | 0.1 | 0.23 | 0.23 | 0.09 | 0.08 | 0.36 | -0.03 | -0.11 | 0.03 | -0.12 | 0.01 | -0.03 | 0.11 | -0.06 | -0.07 | 0.08 | -0.12 | 0.01 | -0.17 | -0.16 | 0 | -0.11 | -0.07 | -0.01 | -0.12 | 0.02 | -0.12 | -0.11 | -0.24 | -0.19 | -0.09 | 0.03 | -0.15 | -0.12 | -0.19 | 0.08 | -0.2 | 0.22 | -0.05 | 0.38 | At3g60820 | 251337_at | PBF1 | 20S proteasome beta subunit F1 (PBF1) | 6 | proteasome core complex (sensu Eukaryota) | ubiquitin-dependent protein catabolism | protein degradation | Folding, Sorting and Degradation | Proteasome | 0.47 | 1.54 | |||||
| At5g26780 | 0.504 | strong similarity to Serine hydroxymethyltransferase (Glycine max) | 0.06 | 0.09 | 0.07 | 0.05 | 0.17 | 0.1 | 0.12 | 0.06 | 0.17 | -0.01 | 0.22 | 0.02 | 0.06 | -0.04 | 0.16 | -0.03 | 0.15 | 0.12 | 0.11 | 0.06 | 0.22 | 0.03 | 0.22 | -0.01 | 0.16 | 0.39 | 0.78 | 1.01 | 0.39 | 0.78 | 1.01 | -0.09 | -0.32 | -0.24 | 0.03 | -0.01 | 0.04 | -0.43 | 0.26 | -0.21 | 0.28 | -0.26 | 0.05 | -0.02 | -0.1 | -0.15 | -0.09 | -0.13 | -0.23 | -0.06 | 0.16 | -0.07 | -0.03 | -0.07 | -0.57 | -0.11 | -0.12 | 0.18 | -0.07 | -0.3 | -0.14 | 0.37 | -1.81 | 0.39 | 0.08 | 0.25 | 0.18 | 1.01 | -0.28 | -0.15 | -1.34 | -0.52 | 0 | -0.08 | 0.31 | 0.18 | -0.02 | -0.42 | -0.2 | -1.03 | 0.39 | -0.08 | -0.2 | 0.04 | -0.08 | 0.1 | 0.24 | 0.21 | 0.08 | -0.04 | -0.41 | 0.16 | -0.03 | 0.06 | -0.1 | 0.04 | -0.15 | 0.11 | 0.03 | -0.19 | 0.04 | -0.08 | -0.43 | -0.06 | -0.44 | At5g26780 | 246800_at | strong similarity to Serine hydroxymethyltransferase (Glycine max) | 6 | amino acid metabolism | superpathway of serine and glycine biosynthesis II | glycine biosynthesis I | formylTHF biosynthesis | serine-isocitrate lyase pathway | formaldehyde assimilation I (serine pathway) | photorespiration | Methane metabolism | Glycine, serine and threonine metabolism | Lysine degradation | Cyanoamino acid metabolism | One carbon pool by folate | Biosynthesis of Amino Acids and Derivatives | Glutathione metabolism | 0.82 | 2.82 | ||||||
| page created by Juergen Ehlting | 06/02/06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||