Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP707A1 (At4g19230)	save all data as Tab Delimited Table
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Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
abscisic acid biosynthesis	AraCyc	20	2
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP707A1 (At4g19230)
max. difference between log2-ratios:				4.9
max. difference between log2-ratios excluding lowest and highest 5%:				2.7
						Link to organ heatmap
there are no genes co-expressed with r>0.5
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP707A1 (At4g19230)
max. difference between log2-ratios:				6.6
max. difference between log2-ratios excluding lowest and highest 5%:				3.1
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
C-compound and carbohydrate metabolism	FunCat	15	0.005	4	0.039
glycolysis and gluconeogenesis	FunCat	14	0.000	3	0.010
Fatty acid metabolism	KEGG	14	0.000	3	0.000
Propanoate metabolism	KEGG	14	0.000	3	0.000
Miscellaneous acyl lipid metabolism	AcylLipid	14	0.000	3	0.005
Biosynthesis of Amino Acids and Derivatives	BioPath	10	0.000	1	0.085
Cell Wall Carbohydrate Metabolism	BioPath	10	0.009	2	0.068
Gluconeogenesis from lipids in seeds	BioPath	10	0.000	1	0.016
Methionin/SAM/ethylene metabolism from cysteine and aspartate	BioPath	10	0.000	1	0.003
sucrose metabolism	BioPath	10	0.000	2	0.000
ethylene biosynthesis	TAIR-GO	10	0.000	1	0.000
fatty acid oxidation pathway	AraCyc	10	0.000	1	0.005
octane oxidation	AraCyc	10	0.000	1	0.001
hyperosmotic salinity response	TAIR-GO	10	0.000	1	0.001
response to water deprivation	TAIR-GO	10	0.000	1	0.001
sucrose biosynthesis	AraCyc	10	0.000	2	0.000
abscisic acid biosynthesis	AraCyc	10	0.000	1	0.002
Pathways co-expressed in the Hormone etc. data set (with more than 8 annotation points)						CYP707A1 (At4g19230)
max. difference between log2-ratios:				4.6
max. difference between log2-ratios excluding lowest and highest 5%:				2.1
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Phenylpropanoid Metabolism	BioPath	26	0.000	4	0.001
Phenylpropanoid pathway	LitPath	26	0.000	4	0.003
core phenylpropanoid metabolism	BioPath	14	0.000	2	0.001
lignin biosynthesis	AraCyc	12	0.000	2	0.005
degradation of abscisic acid	LitPath	10	0.000	2	0.000
lignin biosynthesis	TAIR-GO	10	0.000	1	0.001
phenylpropanoid metabolism	TAIR-GO	10	0.000	1	0.000
colanic acid building blocks biosynthesis	AraCyc	10	0.000	3	0.001
dTDP-rhamnose biosynthesis	AraCyc	10	0.000	3	0.000
galactose degradation I	AraCyc	10	0.000	3	0.000
glucose conversion	AraCyc	10	0.000	3	0.000
lactose degradation IV	AraCyc	10	0.000	3	0.000
hyperosmotic salinity response	TAIR-GO	10	0.000	1	0.001
response to water deprivation	TAIR-GO	10	0.000	1	0.001
abscisic acid biosynthesis	AraCyc	10	0.000	1	0.002
UDP-glucose conversion	AraCyc	10	0.000	3	0.000
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP707A1 (At4g19230)
max. difference between log2-ratios:				6.2
max. difference between log2-ratios excluding lowest and highest 5%:				3.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
C-compound and carbohydrate utilization	FunCat	18	0.000	3	0.000
Cell Wall Carbohydrate Metabolism	BioPath	14	0.000	2	0.047
GDP-carbohydrate biosynthesis	BioPath	10	0.000	1	0.000
Intermediary Carbon Metabolism	BioPath	10	0.000	3	0.000
de novo' GDP-L-fucose biosynthesis	TAIR-GO	10	0.000	1	0.000
growth	TAIR-GO	10	0.000	1	0.002
L-fucose biosynthesis	TAIR-GO	10	0.000	1	0.000
unidimensional cell growth	TAIR-GO	10	0.000	1	0.001
colanic acid building blocks biosynthesis	AraCyc	10	0.000	1	0.007
GDP-D-rhamnose biosynthesis	AraCyc	10	0.000	1	0.000
biogenesis of cell wall	FunCat	10	0.000	1	0.028
Fructose and mannose metabolism	KEGG	10	0.000	1	0.008
page created by Juergen Ehlting	05/24/06