| _________________________________________ |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) |
|
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
|
|
|
|
|
|
| Pathway |
Source |
Sum of scores |
Sum of genes |
|
|
|
|
|
|
|
| Stilbene, coumarine and lignin biosynthesis |
KEGG |
34 |
9 |
|
|
|
|
|
|
|
| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
34 |
6 |
|
|
|
|
|
|
|
|
|
| monoterpene biosynthesis |
LitPath |
28 |
3 |
|
|
|
|
|
|
|
|
|
| monoterpene biosynthesis |
LitPath |
28 |
3 |
|
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
|
|
|
|
|
|
|
|
| detoxification |
FunCat |
22 |
3 |
|
|
|
|
|
|
|
|
|
| fatty acid metabolism |
TAIR-GO |
20 |
2 |
|
|
|
|
|
|
|
|
|
| detoxification involving cytochrome P450 |
FunCat |
20 |
2 |
|
For more information on how these pathway maps were generated please read the methods page |
|
|
|
|
|
|
|
|
| Ascorbate and aldarate metabolism |
KEGG |
20 |
2 |
|
|
|
|
|
|
|
|
|
| Fluorene degradation |
KEGG |
20 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| gamma-Hexachlorocyclohexane degradation |
KEGG |
20 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| fatty acid modulation |
LitPath |
20 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) |
|
CYP708A1 (At1g55940) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
3.1 |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
1.8 |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
|
|
|
|
|
|
|
| Stilbene, coumarine and lignin biosynthesis |
KEGG |
24 |
0.000 |
8 |
0.000 |
|
|
|
| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
20 |
0.000 |
4 |
0.003 |
|
|
| monoterpenoid biosynthesis |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
|
|
| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
19 |
0.000 |
2 |
0.003 |
|
|
| monoterpene biosynthesis |
LitPath |
19 |
0.000 |
2 |
0.000 |
|
|
| terpenoid metabolism |
LitPath |
19 |
0.000 |
2 |
0.003 |
|
|
| Methane metabolism |
KEGG |
14 |
0.000 |
7 |
0.000 |
|
|
| Phenylalanine metabolism |
KEGG |
14 |
0.000 |
7 |
0.000 |
|
|
| Prostaglandin and leukotriene metabolism |
KEGG |
14 |
0.000 |
7 |
0.000 |
|
|
| detoxification |
FunCat |
12 |
0.000 |
2 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| Miscellaneous acyl lipid metabolism |
AcylLipid |
12 |
0.008 |
6 |
0.005 |
|
|
|
|
|
|
|
|
|
|
|
| Phenylpropanoid Metabolism |
BioPath |
11 |
0.000 |
2 |
0.002 |
|
|
|
|
|
|
|
|
|
|
|
| Glucosyltransferases for benzoic acids |
BioPath |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| fatty acid metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| detoxification involving cytochrome P450 |
FunCat |
10 |
0.000 |
1 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| Ascorbate and aldarate metabolism |
KEGG |
10 |
0.000 |
1 |
0.017 |
|
|
|
|
|
|
|
|
|
|
|
| Fluorene degradation |
KEGG |
10 |
0.000 |
1 |
0.006 |
|
|
|
|
|
|
|
|
|
|
|
| gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.008 |
|
|
|
|
|
|
|
|
|
|
|
| fatty acid modulation |
LitPath |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| monoterpene biosynthesis |
AraCyc |
9 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| plant monoterpene biosynthesis |
AraCyc |
9 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| isoprenoid biosynthesis |
FunCat |
8 |
0.000 |
2 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
8 |
0.000 |
2 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) |
|
CYP708A1 (At1g55940) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
4.6 |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
1.4 |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to stress heatmap |
|
|
|
|
|
|
|
| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
14 |
0.000 |
2 |
0.005 |
|
| fatty acid metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
| detoxification |
FunCat |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| detoxification involving cytochrome P450 |
FunCat |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| Ascorbate and aldarate metabolism |
KEGG |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| Fluorene degradation |
KEGG |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| Stilbene, coumarine and lignin biosynthesis |
KEGG |
10 |
0.000 |
1 |
0.004 |
|
|
|
|
|
|
|
|
|
|
|
| fatty acid modulation |
LitPath |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
