Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP708A1 (At1g55940) save all data as Tab Delimited Table










_________________________________________














Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






Stilbene, coumarine and lignin biosynthesis KEGG 34 9






Fatty acid elongation and wax and cutin metabolism AcylLipid 34 6








monoterpene biosynthesis LitPath 28 3








monoterpene biosynthesis LitPath 28 3
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.







detoxification FunCat 22 3








fatty acid metabolism TAIR-GO 20 2








detoxification involving cytochrome P450 FunCat 20 2
For more information on how these pathway maps were generated please read the methods page







Ascorbate and aldarate metabolism KEGG 20 2








Fluorene degradation KEGG 20 2












gamma-Hexachlorocyclohexane degradation KEGG 20 2












fatty acid modulation LitPath 20 2














































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP708A1 (At1g55940)







max. difference between log2-ratios: 3.1











max. difference between log2-ratios excluding lowest and highest 5%: 1.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Stilbene, coumarine and lignin biosynthesis KEGG 24 0.000 8 0.000


Fatty acid elongation and wax and cutin metabolism AcylLipid 20 0.000 4 0.003

monoterpenoid biosynthesis TAIR-GO 19 0.000 2 0.000

mono-/sesqui-/di-terpene biosynthesis LitPath 19 0.000 2 0.003

monoterpene biosynthesis LitPath 19 0.000 2 0.000

terpenoid metabolism LitPath 19 0.000 2 0.003

Methane metabolism KEGG 14 0.000 7 0.000

Phenylalanine metabolism KEGG 14 0.000 7 0.000

Prostaglandin and leukotriene metabolism KEGG 14 0.000 7 0.000

detoxification FunCat 12 0.000 2 0.000










Miscellaneous acyl lipid metabolism AcylLipid 12 0.008 6 0.005










Phenylpropanoid Metabolism BioPath 11 0.000 2 0.002










Glucosyltransferases for benzoic acids BioPath 10 0.000 1 0.000










fatty acid metabolism TAIR-GO 10 0.000 1 0.001










detoxification involving cytochrome P450 FunCat 10 0.000 1 0.001










Ascorbate and aldarate metabolism KEGG 10 0.000 1 0.017










Fluorene degradation KEGG 10 0.000 1 0.006










gamma-Hexachlorocyclohexane degradation KEGG 10 0.000 1 0.008










fatty acid modulation LitPath 10 0.000 1 0.000










monoterpene biosynthesis AraCyc 9 0.000 1 0.000










plant monoterpene biosynthesis AraCyc 9 0.000 1 0.000










isoprenoid biosynthesis FunCat 8 0.000 2 0.001










lipid, fatty acid and isoprenoid biosynthesis FunCat 8 0.000 2 0.001












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP708A1 (At1g55940)







max. difference between log2-ratios: 4.6











max. difference between log2-ratios excluding lowest and highest 5%: 1.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Fatty acid elongation and wax and cutin metabolism AcylLipid 14 0.000 2 0.005
fatty acid metabolism TAIR-GO 10 0.000 1 0.000
detoxification FunCat 10 0.000 1 0.000










detoxification involving cytochrome P450 FunCat 10 0.000 1 0.000










Ascorbate and aldarate metabolism KEGG 10 0.000 1 0.000










Fluorene degradation KEGG 10 0.000 1 0.000










gamma-Hexachlorocyclohexane degradation KEGG 10 0.000 1 0.000










Stilbene, coumarine and lignin biosynthesis KEGG 10 0.000 1 0.004










fatty acid modulation LitPath 10 0.000 1 0.000












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP708A1 (At1g55940)







max. difference between log2-ratios: 1.3











max. difference between log2-ratios excluding lowest and highest 5%: 1.0

















Link to hormones etc. heatmap






there are no coexpressed genes with r>0.5









































































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP708A1 (At1g55940)







max. difference between log2-ratios: 1.9











max. difference between log2-ratios excluding lowest and highest 5%: 1.1

















Link to mutants heatmap






there are no coexpressed genes with r>0.5





































page created by Juergen Ehlting 05/29/06