Co-Expression Analysis of: CYP708A4 (At3g44970) Institut de Biologie Moléculaire des Plantes



































































































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Hormones etc. Data Set save / view heatmap as: OpenOffice Table annotation details for co-expressed genes can be found to the right of the heatmap


















































































































MS Excel Table


















































































































save / view all data as: Tab delimited Table For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets.















































































































shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) magnitude of change [log2(treatment/control)]    0   0.3   0.6   0.9  1.2   1.5   1.8   2.1   2.4   2.7   >2.99 












































































































greater than zero                                                         












































































































less than zero                                                         












































































































Locus r-value Name Description ethylene, 3h, petiole (13) mock, 30min, seedling (110) IAA, 30min, seedling (110) IAA, 1h, seedling (110) IAA, 3h, seedling (110) zeatin, 30min, seedling (110) zeatin, 1h, seedling (110) zeatin, 3h, seedling (110) GA3, 30min, seedling (110) GA3, 1h, seedling (110) GA3, 3h, seedling (110) ABA, 30min, seedling (110) ABA, 1h, seedling (110) ABA, 3h, seedling (110) MJ, 30min, seedling (110) MJ, 1h, seedling (110) MJ, 3h, seedling (110) ACC, 30min, seedling (110) ACC, 1h, seedling (110) ACC, 3h, seedling (110) BL, 30min, seedling (110) BL, 1h, seedling (110) BL, 3h, seedling (110) ABA, 3 uM, imbided seed (116) ABA, 30 uM, imbided seed (116) GA, 3h, imbibed seed (119) GA, 6h, imbibed seed (119) GA, 9h, imbibed seed (119) GA, 3h, imbibed seed (134) GA, 6h, imbibed seed (134) GA, 9h, imbibed seed (134) GA, 30min, whole plant (99) GA, 60min, whole plant (99) GA, 3h, whole plant (99) IAA, 0.1uM, 1h, seedling (144) IAA, 0.1uM, 3h, seedling (144) IAA, 1uM, 1h, seedling (144) IAA, 1uM, 3h, seedling (144) ppi, 3h, seedling (113) ppi, 12h, seedling (113) uni, 3h, seedling (113) uni, 12h, seedling (113) brz220, 3h, seedling (113) brz220, 12h, seedling (113) brz91, 3h, seedling (113) brz91, 12h, seedling (113) pac, 3h, seedling (113) pac, 12h, seedling (113) px, 3h, seedling (113) px, 12h, seedling (113) pno8, 3h, seedling (113) pno8, 12h, seedling (113) ibup, 3h, seedling (113) B9, 3h, seedling (113) AgNO3, 3h, seedling (113) AVG, 3h, seedling (113) Sal, 3h, seedling (113) MG132, 3h, seedling (113) 246T, 3h, seedling (113) PCIB, 3h, seedling (113) TIBA, 3h, seedling (113) NPA, 3h, seedling (113) CHX, 3h, seedling (113) Colm, 3h, seedling (113) ColPNO8, 3h, seedling (113) ColBrz, 3h, seedling (113) glucose, 8h, seedling (14) sucrose, 8h, seedling (15) deoxyglucose, 8h_seedling (14) methylglucose, 8h, seedling (14) K depleted, whole rosette (97) K depleted, root (97) Sulfate depleted, 2h, root (112) Sulfate depleted, 4h, root (112) Sulfate depleted, 8h, root (112) Sulfate depleted, 12h, root (112) Sulfate depleted, 24h, root (112) mannitol, 8h, seedling (14) CO2, 1000ppm, guard cell enriched (11) CO2, 1000ppm, mature leaf (11) CO2, high light, whole rosette (95) CO2, medium light, whole rosette (95) CO2, low light, whole rosette (95) CO2, 2h, juvenile leaf (151) CO2, 4h, juvenile leaf (151) CO2, 6h, juvenile leaf (151) CO2, 12h, juvenile leaf (151) CO2, 24h, juvenile leaf (151) CO2, 48h, juvenile leaf (151) dark, 45min, seedling (109) dark, 4h, seedling (109) far red, 45min, seedling (109) far red, 4h, seedling (109) red pulse1, seedling (109) red pulse2, seedling (109) red, 45min, seedling (109) red, 4h, seedling (109) blue, 45min, seedling (109) blue, 4h, seedling (109) UV-A pulse1, seedling (109) UV-A pulse2, seedling (109) UV-AB pulse1, seedling (109) UV-AB pulse2, seedling (109) UV-A, 18h, mature leaf (72) UV-B, 18h, mature leaf (72) Locus Probeset Name Description Annotation score GO.keywords FunCat keywords AraCyc annotations KEGG annotations BioPath annotations AcylLipid category Literature annotations Gene family 90% quantile of DE max. DE
At3g44970 1.000 CYP708A4 cytochrome P450 family protein 0.14 0.14 0.19 -0.2 -1.65 -0.06 0.07 -0.5 0.02 -0.11 -1.42 -0.15 0.28 0.4 0.06 -0.01 1.11 -0.04 -0.02 -0.68 0.01 -0.16 0.1 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.68 0.14 0.45 -0.7 -0.68 -1.12 0.37 -0.22 0.28 -0.1 0.28 -0.39 0.51 -0.17 0.1 -0.39 0.73 0.51 -0.04 0.02 0.56 0.37 -0.7 0.95 -0.31 0.47 0.37 0.41 -0.11 0.6 -1.04 -1.05 -2.59 -1.14 -0.51 0.14 -0.31 -0.33 0.14 0.14 0.14 0.14 0.14 0.14 0.14 -0.4 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.6 0.14 0.14 0.14 0.14 0.14 0.67 0.14 0.14 0.14 0.14 0.14 0.14 At3g44970 252629_at CYP708A4 cytochrome P450 family protein 1
detoxification | detoxification involving cytochrome P450




cytochrome P450 family 1.65 3.70
At4g37000 0.575 ACD2 accelerated cell death 2. Mutants have spontaneous spreading cell death lesions and constitutive activation of defenses in the absence of pathogen infection. Its predicted product shows similarity to red chlorophyll catabolite reductase, which catalyzes one step in the breakdown -0.12 0.09 0.13 -0.03 -0.21 0.05 -0.09 -0.18 0.14 -0.05 -0.19 0.06 0.14 0.07 0.05 0.12 0.13 -0.02 -0.02 -0.25 -0.02 -0.1 0.02 0.17 0.08 0.06 0.02 0.08 0.06 0.02 0.08 0.01 -0.02 -0.24 0 0.14 0.15 -0.26 -0.04 0.17 -0.1 -0.06 -0.04 -0.04 0.13 0.07 -0.07 0 0.1 0.02 0.01 0.12 -0.12 0.01 -0.27 -0.08 -0.11 -0.08 -0.1 0.03 -0.03 -0.19 -0.31 -0.47 -0.8 -0.42 -0.02 0.13 0.1 0.02 0.28 0.25 0.23 0.18 -0.07 0.16 0.14 -0.22 -0.18 0.2 0.12 0.04 -0.33 0.19 0.15 0.07 0.1 0.01 0.15 -0.21 -0.17 0.1 0.45 0.03 -0.04 -0.16 0.18 -0.02 0.41 0.23 -0.09 0.38 -0.02 0.04 -0.21 At4g37000 246194_at ACD2 accelerated cell death 2. Mutants have spontaneous spreading cell death lesions and constitutive activation of defenses in the absence of pathogen infection. Its predicted product shows similarity to red chlorophyll catabolite reductase, which catalyzes one step in the breakdown 10 chlorophyll catabolism | hypersensitive response


Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Chlorophyll biosynthesis and breakdown
chlorophyll and phytochromobilin metabolism | chlorophyll catabolism
0.50 1.26
At1g28570 0.567
GDSL-motif lipase family protein -0.03 0.15 0.36 -0.39 -0.68 0.55 0.27 0.06 0.4 -0.12 0.01 0.03 0.03 -0.03 0.49 0.3 0.34 0.18 -0.08 -0.21 0.53 0.34 0.02 0.72 -0.21 -0.46 -0.17 0.8 -0.46 -0.17 0.8 0.38 0.19 0.68 0.31 0.5 -0.02 -0.46 0.11 -0.38 -0.01 -0.17 -0.04 -0.25 0.07 0.03 -0.1 -0.28 0.02 -0.01 -0.16 -0.01 0.04 0.05 -0.65 0.55 -0.31 0.03 -0.08 0.15 -0.34 0.23 -1.31 -0.77 -1.55 -1.17 -0.15 0.27 -0.37 -0.14 -0.18 0.28 0.3 -0.01 0 0.15 0.18 -0.11 0.16 0.42 0.23 -0.22 0.02 -0.4 -0.08 0.45 0.01 0.42 0.39 0.14 -1.46 0.5 0.54 0.39 -0.47 0.27 0.27 0.18 0.45 0.08 -0.25 0.09 -0.14 -0.49 -0.32 At1g28570 262736_at
GDSL-motif lipase family protein 2

triacylglycerol degradation




1.22 2.35
At4g27560 0.555
glycosyltransferase family protein -0.36 -0.03 -0.14 -0.55 -0.74 -0.26 -0.04 -0.03 0 -0.28 0 -0.36 0.2 0.68 0.63 1.94 2.47 -0.41 -0.17 -0.32 0 -0.39 -0.44 -0.55 0.04 -0.03 -0.03 -0.03 -0.03 -0.03 -0.03 0.35 0.41 0.33 -0.04 -0.16 -0.4 -1.05 0.46 -0.47 0.33 -1.17 0.55 -0.78 0.6 -0.82 0.28 -0.83 0.05 0.25 0.25 -0.65 0.46 0.55 0.92 0.64 -0.25 0.38 0.44 -0.3 0.15 0.48 -2.1 -1.12 -0.85 -1.39 -0.46 0.92 -0.41 -1.5 0.2 0.41 0.16 -0.38 0.11 0.14 -0.24 -0.74 -0.42 -0.13 -0.27 0.64 -0.2 0.01 -0.14 -0.12 0.46 0.15 0.04 -0.03 -0.28 -0.03 2.77 -0.03 -0.28 -0.03 -0.28 -0.03 2.19 -0.03 -0.28 -0.03 0.26 -0.34 2.06 At4g27560 253879_s_at (m)
glycosyltransferase family protein 1
C-compound and carbohydrate metabolism

Phenylpropanoid Metabolism | Flavonoid and anthocyanin metabolism

Glycosyl transferase, Family 1 1.93 4.87
At4g27570 0.555
glycosyltransferase family protein -0.36 -0.03 -0.14 -0.55 -0.74 -0.26 -0.04 -0.03 0 -0.28 0 -0.36 0.2 0.68 0.63 1.94 2.47 -0.41 -0.17 -0.32 0 -0.39 -0.44 -0.55 0.04 -0.03 -0.03 -0.03 -0.03 -0.03 -0.03 0.35 0.41 0.33 -0.04 -0.16 -0.4 -1.05 0.46 -0.47 0.33 -1.17 0.55 -0.78 0.6 -0.82 0.28 -0.83 0.05 0.25 0.25 -0.65 0.46 0.55 0.92 0.64 -0.25 0.38 0.44 -0.3 0.15 0.48 -2.1 -1.12 -0.85 -1.39 -0.46 0.92 -0.41 -1.5 0.2 0.41 0.16 -0.38 0.11 0.14 -0.24 -0.74 -0.42 -0.13 -0.27 0.64 -0.2 0.01 -0.14 -0.12 0.46 0.15 0.04 -0.03 -0.28 -0.03 2.77 -0.03 -0.28 -0.03 -0.28 -0.03 2.19 -0.03 -0.28 -0.03 0.26 -0.34 2.06 At4g27570 253879_s_at (m)
glycosyltransferase family protein 1
C-compound and carbohydrate metabolism

Phenylpropanoid Metabolism | Flavonoid and anthocyanin metabolism

Glycosyl transferase, Family 1 1.93 4.87
At5g17220 0.535 ATGSTF12 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. -2.33 0.09 -0.36 0.1 -0.72 -0.28 0.37 0.56 -0.22 0.18 -0.38 -0.07 0.09 0.26 -0.44 0.36 1.23 -0.18 -0.39 -0.34 -0.15 0.44 -0.06 0.09 0.09 1.06 0.56 1.11 1.06 0.56 1.11 0.09 0.09 1.58 -0.35 0.1 -0.6 -1.01 0.27 -0.16 -0.39 -0.62 -0.02 -0.33 0.06 -0.21 -0.03 -0.23 -0.15 0.5 -0.16 -0.34 0.59 -0.16 -0.43 0.65 -0.21 0.56 -0.01 0.28 -0.17 0.52 -1.88 -1.88 -1.88 -1.88 -2.19 0.09 -2.19 -2.19 1.64 0.09 0.09 0.09 0.09 0.85 0.09 -2.19 0.09 -0.59 -1.15 -0.16 0.09 0.03 -0.22 0.21 0.64 0.72 0.01 0.09 0.09 0.09 3.09 0.09 0.09 0.09 0.09 0.09 2.36 0.09 0.09 0.09 0.09 0.09 3.68 At5g17220 250083_at ATGSTF12 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. 8 toxin catabolism


Phenylpropanoid Metabolism | Sequestration of phenylpropanoids (cytosol --> vacuole) | Biosynthesis of Amino Acids and Derivatives | Glutathione metabolism

Glutathione S-transferase, Phi family 3.09 6.00
At1g65060 0.534 4CL3 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. 0.17 0.17 0.27 -0.11 -1.11 0.07 0.12 0.47 -0.12 -0.23 -0.95 -0.05 -0.25 -0.88 -0.17 -0.2 0.34 -0.21 -0.27 -0.77 -0.32 -0.18 0.12 0.17 0.17 0.17 0.17 0.17 0.17 0.17 0.17 0.17 0.17 1.75 0.78 -0.01 0.1 -1.5 0.46 0.15 0.22 0.2 0.56 0.33 0.24 0.05 -0.11 0.02 -0.6 0.22 0.3 -0.06 0.48 0.04 -2.35 0.23 -0.47 0.37 0.34 0.05 -0.35 0.1 -2.35 -0.45 -1.47 -0.61 -0.03 0.17 -0.42 -2.24 -0.48 0.17 0.4 0.64 0.42 0.6 0.33 -2.24 0.17 0.17 -0.08 -2.14 0.17 0.32 0.33 0.18 0.35 0.24 0.39 0.17 0.17 0.17 2.31 0.17 0.17 0.17 0.17 0.17 0.66 0.17 0.17 0.17 0.7 0.17 2.52 At1g65060 261907_at 4CL3 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. 10 4-coumarate-CoA ligase activity | response to UV | phenylpropanoid metabolism
suberin biosynthesis | lignin biosynthesis | flavonoid biosynthesis Stilbene, coumarine and lignin biosynthesis Phenylpropanoid Metabolism | core phenylpropanoid metabolism
flavonoid, anthocyanin, and proanthocyanidin biosynthesis | general phenylpropanoid pathway | Phenylpropanoid pathway Acyl activating enzymes , CoA ligases, clade IV, 4-coumarate-CoA ligase 2.15 4.88
At4g17090 0.532 CT-BMY beta-amylase targeted to the chloroplast -0.76 0.23 -0.1 0.12 -1.09 -0.1 -0.25 -0.19 0.05 0.01 -0.18 -0.08 0.46 -1.18 -0.04 -0.07 0.3 -0.28 0.01 -0.34 -0.03 0.25 0.56 0.36 -0.03 0.57 0.21 -0.11 0.57 0.21 -0.11 0.51 0.22 0.48 0.02 -0.2 -0.72 -1.77 0.27 -0.17 0.22 -0.02 0.16 0.07 0.28 -0.12 0.11 -0.24 -0.06 0.48 0.42 0 0.46 -0.07 -0.24 0.37 0.1 0.49 0.36 -0.17 -0.06 0.27 -1.22 -0.95 -1.3 -1.41 -0.15 0.21 0.15 0.23 -1.49 0.23 0.54 0.42 0.23 0.63 0.33 0.12 -1.06 -1.45 0.2 0.67 1.05 0.14 0.1 0.15 0.52 0.28 0.05 -0.97 -0.75 0.67 1.67 -0.17 -0.42 0.25 0 -0.22 0.97 0.67 -0.53 0.38 -0.79 0.53 1.07 At4g17090 245346_at CT-BMY beta-amylase targeted to the chloroplast 6 beta-amylase activity | starch catabolism C-compound, carbohydrate catabolism | metabolism of energy reserves (e.g. glycogen, trehalose) starch degradation Starch and sucrose metabolism Cell Wall Carbohydrate Metabolism | starch metabolism


1.88 3.44
At5g07990 0.520 TT7, CYP75B1 flavonoid 3'-monooxygenase / flavonoid 3'-hydroxylase (F3'H) / cytochrome P450 75B1 (CYP75B1) / transparent testa 7 protein (TT7) -0.42 0.09 -0.02 -0.06 -0.84 -0.05 -0.37 0.05 -0.07 -0.07 -0.38 0.23 0.41 -0.05 -0.21 0 0.7 -0.13 0.38 -0.69 0.11 0.3 0.03 0.28 0.89 -0.18 -0.31 -0.63 -0.18 -0.31 -0.63 0.54 0.12 1.81 -0.01 -0.01 -0.01 -0.6 0.36 0.07 -0.07 -0.1 0.1 0.19 0.2 0.19 0.12 -0.24 0.48 0.12 -0.13 -0.38 0.54 -0.2 -0.86 0.38 -0.27 0.55 0.28 -0.14 -0.14 0.1 -0.62 -0.35 -0.51 -0.53 -0.26 0.09 -0.35 -0.46 0.02 0.12 0.07 -0.08 0.2 0.3 0.31 -0.98 -0.3 0.09 -0.77 0.49 0.09 -0.05 0.07 0.13 0.4 0.75 0.15 -0.21 -0.07 -0.14 0.57 0.11 -0.34 0.02 0.2 0.12 0.33 -0.16 -0.14 -0.03 0.3 0.06 0.45 At5g07990 250558_at TT7, CYP75B1 flavonoid 3'-monooxygenase / flavonoid 3'-hydroxylase (F3'H) / cytochrome P450 75B1 (CYP75B1) / transparent testa 7 protein (TT7) 10 flavonoid 3'-monooxygenase activity | response to UV | flavonoid biosynthesis secondary metabolism anthocyanin biosynthesis | flavonol biosynthesis Flavonoid biosynthesis

flavonoid, anthocyanin, and proanthocyanidin biosynthesis cytochrome P450 family, 3’-hydroxylase for narigenin, dihydrokaempferol, flavonoid biosynthesis 1.19 2.79
At5g38020 0.519
S-adenosyl-L-methionine:carboxyl methyltransferase family protein, similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT) (Antirrhinum majus) 0.06 0.14 0.12 -0.61 -0.87 -0.01 0.26 1.1 0.3 -0.28 0.22 0.4 0.02 -0.74 0.16 0.41 0.62 0.23 0.19 -0.45 0.68 0.31 -0.18 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.14 0.1 0.16 -1.17 0.28 -0.3 0.2 -1.25 0.21 0.24 -0.04 -0.23 0.43 0.25 0.06 0.02 0.57 0.39 0.8 0.61 -0.12 0.42 0.38 0.41 -1.87 0.7 -0.45 -0.25 0.17 0.7 -0.77 0.27 -1.76 -0.75 -1.01 -0.85 -0.96 1.95 -0.87 -0.93 0.26 0.85 0.18 0.41 0.17 0.18 0.27 -1.05 -0.22 0.14 0.14 0.14 0.42 0.28 0.14 0.14 0.14 0.14 0.28 -0.13 -0.99 0.12 -0.11 -0.01 -0.35 0.01 -0.08 0.13 0.3 -0.09 -0.33 -0.28 -0.49 0.14 0.14 At5g38020 249567_at
S-adenosyl-L-methionine:carboxyl methyltransferase family protein, similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT) (Antirrhinum majus) 2
secondary metabolism




Methyltransferase, SABATH family 1.70 3.83
At3g23410 0.514
similar to long chain fatty alcohol oxidase from Candida cloacae -1.36 0.41 0.8 0.09 -1.63 0.7 1.05 0.48 0.13 0.16 -1.63 0.2 0.9 1.1 0.47 1.11 0.82 -0.41 -0.85 -1.63 -1.21 0.82 0.11 -0.4 -0.39 -0.57 -1.06 0.05 -0.57 -1.06 0.05 0.25 -0.13 0.76 0 -0.03 -0.24 -1.23 0.11 -0.39 0.27 -0.03 0.26 -0.45 -0.17 -0.5 0.27 -0.31 0.59 0.37 -0.26 -0.1 0.21 0.4 0.17 1.2 -0.42 0.23 0.13 -0.57 -1.03 -0.02 -0.92 -0.36 -1.93 -0.12 -0.45 0.71 0.19 0.35 -0.62 0.24 0.56 0.11 0.17 0.33 0.15 0.33 -0.26 1.9 -0.03 0.36 0.15 0.57 0.63 0.33 0.5 0.61 0.13 0.41 -1.36 0.41 1.39 0.41 -1.48 0.41 -0.46 0.41 0.8 0.41 -1.39 0.41 -0.99 0.21 0.78 At3g23410 258299_at
similar to long chain fatty alcohol oxidase from Candida cloacae 2

fatty acid oxidation pathway III

Degradation of storage lipids and straight fatty acids

2.41 3.83




























































































































page created by Juergen Ehlting 06/02/06