Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP709B1 (At2g46960)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are only co-expressed pathways in the organ data set
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP709B1 (At2g46960)
max. difference between log2-ratios:				7.4
max. difference between log2-ratios excluding lowest and highest 5%:				4.9
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Cell Wall Carbohydrate Metabolism	BioPath	40	0.000	10	0.012
Phenylpropanoid Metabolism	BioPath	34	0.000	7	0.005
Flavonoid and anthocyanin metabolism	BioPath	30	0.000	5	0.000
Gibberellin metabolism	LitPath	24	0.000	4	0.000
giberelin biosynthesis	LitPath	24	0.000	4	0.000
secondary metabolism	FunCat	20	0.000	2	0.070
pectin metabolism	BioPath	18	0.000	7	0.002
proanthocyanidin biosynthesis	TAIR-GO	18	0.000	2	0.000
(deoxy)ribose phosphate degradation	AraCyc	15	0.000	2	0.000
Nucleotide Metabolism	KEGG	15	0.000	2	0.006
Pyrimidine metabolism	KEGG	15	0.000	2	0.001
abscisic acid biosynthesis	TAIR-GO	12	0.000	2	0.000
abscisic acid biosynthesis	AraCyc	12	0.000	2	0.000
isoprenoid biosynthesis	FunCat	12	0.002	2	0.073
lipid, fatty acid and isoprenoid biosynthesis	FunCat	12	0.001	2	0.052
Miscellaneous acyl lipid metabolism	AcylLipid	12	0.015	6	0.011
abscisic acid biosynthesis	LitPath	12	0.000	2	0.003
Carotenoid and abscisic acid metabolism	LitPath	12	0.001	2	0.046
Pathways co-expressed in the Stress data set						CYP709B1 (At2g46960)
max. difference between log2-ratios:				1.0
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
						Link to stress heatmap
there are no co-expressed pathways with more than 6 annotation points
Pathways co-expressed in the Hormone etc. data set						CYP709B1 (At2g46960)
max. difference between log2-ratios:				0.5
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
						Link to hormones etc. heatmap
there are no co-expressed pathways with r-value greater than 0.6
Pathways co-expressed in the Mutant data set						CYP709B1 (At2g46960)
max. difference between log2-ratios:				2.0
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
						Link to mutants heatmap
there are no co-expressed pathways with r-value greater than 0.6
page created by Juergen Ehlting	03/06/06