| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP709B2 (At2g46950) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are no co-expressed pathways common in the 2 data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP709B2 (At2g46950) | |||||||||||||||
| max. difference between log2-ratios: | 5.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 4.1 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| gibberellic acid biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 |
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| gibberellin biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| plant / fungal specific systemic sensing and response | FunCat | 10 | 0.000 | 1 | 0.000 | |||||||||||
| plant hormonal regulation | FunCat | 10 | 0.000 | 1 | 0.000 | |||||||||||
| secondary metabolism | FunCat | 10 | 0.000 | 1 | 0.004 | |||||||||||
| Diterpenoid biosynthesis | KEGG | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Gibberellin metabolism | LitPath | 10 | 0.000 | 1 | 0.001 | |||||||||||
| giberelin biosynthesis | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP709B2 (At2g46950) | |||||||||||||||
| max. difference between log2-ratios: | 4.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.5 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP709B2 (At2g46950) | |||||||||||||||
| max. difference between log2-ratios: | 2.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.8 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| Fatty acid elongation and wax and cutin metabolism | AcylLipid | 18 | 0.000 | 5 | 0.000 |
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| lactose degradation IV | AraCyc | 14 | 0.000 | 3 | 0.000 | |||||||||||
| fatty acid metabolism | TAIR-GO | 12 | 0.000 | 3 | 0.000 | |||||||||||
| long-chain fatty acid metabolism | TAIR-GO | 12 | 0.000 | 3 | 0.000 | |||||||||||
| very-long-chain fatty acid metabolism | TAIR-GO | 12 | 0.000 | 3 | 0.000 | |||||||||||
| atty acid elongation -- unsaturated | AraCyc | 12 | 0.000 | 3 | 0.000 | |||||||||||
| fatty acid biosynthesis -- initial steps | AraCyc | 12 | 0.000 | 3 | 0.000 | |||||||||||
| fatty acid elongation -- saturated | AraCyc | 12 | 0.000 | 3 | 0.000 | |||||||||||
| fatty acid elongation -- unsaturated | AraCyc | 12 | 0.000 | 3 | 0.000 | |||||||||||
| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | BioPath | 10 | 0.000 | 1 | 0.018 | |||||||||||
| Tocopherol biosynthesis | BioPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| vitamin E biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| vitamin E biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.001 | |||||||||||
| tocopherol (vitamin E) biosynthesis | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| L-serine biosynthesis | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| cysteine biosynthesis I | AraCyc | 9 | 0.000 | 1 | 0.034 | |||||||||||
| cysteine biosynthesis II | AraCyc | 9 | 0.000 | 1 | 0.013 | |||||||||||
| glycine biosynthesis I | AraCyc | 9 | 0.000 | 1 | 0.041 | |||||||||||
| serine biosynthesis | AraCyc | 9 | 0.000 | 1 | 0.001 | |||||||||||
| Transcription (chloroplast) | BioPath | 8 | 0.000 | 1 | 0.000 | |||||||||||
| fatty acid elongation | TAIR-GO | 8 | 0.000 | 2 | 0.000 | |||||||||||
| transcription initiation | TAIR-GO | 8 | 0.000 | 1 | 0.002 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) | CYP709B2 (At2g46950) | |||||||||||||||
| max. difference between log2-ratios: | 3.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.6 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| page created by Juergen Ehlting | 05/24/06 | |||||||||||||||