Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP710A3 / CYP710A4 (At2g28850 / At2g28860)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways common in the 3 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP710A3 / CYP710A4 (At2g28850 / At2g28860)
max. difference between log2-ratios:				2.3
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
mono-/sesqui-/di-terpene biosynthesis	LitPath	16	0.000	4	0.000
terpenoid metabolism	LitPath	16	0.000	4	0.000
Biosynthesis of steroids	KEGG	15	0.000	3	0.000
secondary metabolism	FunCat	9	0.000	2	0.000
triterpene, sterol, and brassinosteroid metabolism	LitPath	9	0.025	2	0.152
Biosynthesis of prenyl diphosphates	BioPath	8	0.000	2	0.001
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)	BioPath	8	0.000	2	0.005
Terpenoid biosynthesis	KEGG	8	0.000	2	0.000
prenyl diphosphate (GPP,FPP, GGPP) biosynthesis	LitPath	8	0.000	2	0.003
pentacyclic triterpenoid biosynthesis	TAIR-GO	7	0.000	1	0.000
triterpene biosynthesis	LitPath	7	0.000	1	0.016
Cell Wall Carbohydrate Metabolism	BioPath	6.5	0.034	3	0.054
pectin metabolism	BioPath	6.5	0.000	3	0.003
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP710A3 / CYP710A4 (At2g28850 / At2g28860)
max. difference between log2-ratios:				2.8
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
						Link to stress heatmap
there are no co-expressed genes with more than 6 annotation points
Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)						CYP710A3 / CYP710A4 (At2g28850 / At2g28860)
max. difference between log2-ratios:				3.0
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Biosynthesis of Amino Acids and Derivatives	BioPath	26	0.000	5	0.013
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	24	0.000	3	0.006
Phenylpropanoid Metabolism	BioPath	20	0.003	4	0.052
amino acid metabolism	FunCat	18	0.000	3	0.003
secondary metabolism	FunCat	18	0.000	6	0.000
Aromatic amino acid (Phe, Tyr, Trp) metabolism	BioPath	16	0.000	2	0.027
Glutathione metabolism	BioPath	16	0.000	2	0.049
cysteine biosynthesis I	AraCyc	16	0.000	2	0.014
sulfate assimilation III	AraCyc	16	0.000	2	0.009
Cysteine metabolism	KEGG	16	0.000	2	0.000
Sulfur metabolism	KEGG	16	0.000	2	0.000
sterol biosynthesis	BioPath	14	0.000	2	0.003
sterol biosynthesis	AraCyc	14	0.000	2	0.002
brassinosteroid biosynthesis	LitPath	14	0.000	2	0.013
sterol and brassinosteroid biosynthesis	LitPath	14	0.000	2	0.005
cellulose biosynthesis	AraCyc	12	0.000	3	0.002
lipid, fatty acid and isoprenoid metabolism	FunCat	12	0.000	2	0.002
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP710A3 / CYP710A4 (At2g28850 / At2g28860)
max. difference between log2-ratios:				4.9
max. difference between log2-ratios excluding lowest and highest 5%:				2.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Aromatic amino acid (Phe, Tyr, Trp) metabolism	BioPath	10	0.000	1	0.008
Phenylpropanoid Metabolism	BioPath	10	0.000	1	0.071
tryptophan biosynthesis	TAIR-GO	10	0.000	1	0.002
amino acid metabolism	FunCat	10	0.000	1	0.015
metabolism of the cysteine - aromatic group	FunCat	10	0.000	1	0.000
Phenylalanine metabolism	KEGG	10	0.000	3	0.000
Shikimate pathway	LitPath	10	0.000	1	0.003
Trp biosyntesis	LitPath	10	0.000	1	0.001
Leaf Glycerolipid Biosynthesis	BioPath	8	0.002	2	0.008
Leaf Glycerolipid Biosynthesis in Plastid	BioPath	8	0.000	2	0.000
Synthesis of fatty acids in plastids	AcylLipid	8	0.000	2	0.000
page created by Juergen Ehlting	05/24/06