| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP711A1 (At2g26170) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| there are no pathways co-expressed in all data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP711A1 (At2g26170) | |||||||||||||||
| max. difference between log2-ratios: | 6.1 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 3.4 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| Biosynthesis of Amino Acids and Derivatives | BioPath | 8 | 0.000 | 1 | 0.004 |
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| Glutamate/glutamine from nitrogen fixation | BioPath | 8 | 0.000 | 1 | 0.000 | |||||||||||
| nitrate assimilation | TAIR-GO | 8 | 0.000 | 1 | 0.000 | |||||||||||
| transcription factor binding | TAIR-GO | 8 | 0.000 | 1 | 0.000 | |||||||||||
| nitrate assimilation pathway | AraCyc | 8 | 0.000 | 1 | 0.000 | |||||||||||
| amino acid metabolism | FunCat | 8 | 0.000 | 1 | 0.003 | |||||||||||
| assimilation of ammonia, metabolism of the glutamate group | FunCat | 8 | 0.000 | 1 | 0.000 | |||||||||||
| nitrogen and sulfur metabolism | FunCat | 8 | 0.000 | 1 | 0.000 | |||||||||||
| Nitrogen metabolism | KEGG | 8 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP711A1 (At2g26170) | |||||||||||||||
| max. difference between log2-ratios: | 3.5 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.4 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to stress heatmap | ||||||||||
| core phenylpropanoid metabolism | BioPath | 10 | 0.000 | 1 | 0.000 |
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| Phenylpropanoid Metabolism | BioPath | 10 | 0.000 | 1 | 0.004 | |||||||||||
| lignin biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| lignin biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Phenylpropanoid pathway | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP711A1 (At2g26170) | |||||||||||||||
| max. difference between log2-ratios: | 2.1 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.2 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| nucleotide metabolism | TAIR-GO | 9 | 0.000 | 1 | 0.000 |
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| de novo biosynthesis of purine nucleotides I | AraCyc | 9 | 0.000 | 1 | 0.012 | |||||||||||
| additional photosystem II components | BioPath | 8 | 0.000 | 1 | 0.001 | |||||||||||
| Early light-inducible proteins | BioPath | 8 | 0.000 | 1 | 0.000 | |||||||||||
| Photosystems | BioPath | 8 | 0.000 | 1 | 0.009 | |||||||||||
| photosynthesis | FunCat | 8 | 0.000 | 1 | 0.001 | |||||||||||
| stress response | FunCat | 8 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP711A1 (At2g26170) | |||||||||||||||
| max. difference between log2-ratios: | 2.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.6 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to mutants heatmap | ||||||||||
| N-terminal protein myristoylation | TAIR-GO | 9 | 0.000 | 1 | 0.000 |
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| intracellular signalling | FunCat | 9 | 0.000 | 1 | 0.000 | |||||||||||
| Benzoate degradation via CoA ligation | KEGG | 9 | 0.000 | 1 | 0.002 | |||||||||||
| Inositol phosphate metabolism | KEGG | 9 | 0.000 | 1 | 0.002 | |||||||||||
| Nicotinate and nicotinamide metabolism | KEGG | 9 | 0.000 | 1 | 0.001 | |||||||||||
| page created by Juergen Ehlting | 03/06/06 | |||||||||||||||