Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP714A2 (At5g24900)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways common in the 4 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 9 annotation points)						CYP714A2 (At5g24900)
max. difference between log2-ratios:				1.8
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Cell Wall Carbohydrate Metabolism	BioPath	34	0.000	10	0.003
Phenylpropanoid Metabolism	BioPath	24	0.000	5	0.026
Flavonoid and anthocyanin metabolism	BioPath	20	0.000	3	0.006
pectin metabolism	BioPath	18	0.000	7	0.001
Gibberellin metabolism	LitPath	14	0.000	3	0.000
giberelin biosynthesis	LitPath	14	0.000	3	0.000
Stilbene, coumarine and lignin biosynthesis	KEGG	12	0.000	2	0.017
Biosynthesis of prenyl diphosphates	BioPath	10	0.000	1	0.119
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	10	0.006	1	0.210
trehalose metabolism	BioPath	10	0.000	2	0.001
dolichol biosynthesis	TAIR-GO	10	0.000	1	0.000
proanthocyanidin biosynthesis	TAIR-GO	10	0.000	1	0.000
(deoxy)ribose phosphate degradation	AraCyc	10	0.000	2	0.000
anthocyanin biosynthesis	AraCyc	10	0.000	1	0.002
trehalose biosynthesis I	AraCyc	10	0.000	2	0.010
trehalose biosynthesis II	AraCyc	10	0.000	2	0.004
trehalose biosynthesis III	AraCyc	10	0.000	2	0.001
energy	FunCat	10	0.000	2	0.000
metabolism of energy reserves (e.g. glycogen, trehalose)	FunCat	10	0.000	2	0.000
nucleotide metabolism	FunCat	10	0.000	2	0.000
pyrimidine nucleotide metabolism	FunCat	10	0.000	2	0.001
Ascorbate and aldarate metabolism	KEGG	10	0.000	1	0.008
Fluorene degradation	KEGG	10	0.000	1	0.003
gamma-Hexachlorocyclohexane degradation	KEGG	10	0.000	1	0.004
Nucleotide Metabolism	KEGG	10	0.000	2	0.008
Pyrimidine metabolism	KEGG	10	0.000	2	0.001
flavonoid, anthocyanin, and proanthocyanidin biosynthesis	LitPath	10	0.000	1	0.020
polyprenyl diphosphate biosynthesis	LitPath	10	0.000	1	0.010
proanthocyanidin biosynthesis	LitPath	10	0.000	1	0.020
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP714A2 (At5g24900)
max. difference between log2-ratios:				1.5
max. difference between log2-ratios excluding lowest and highest 5%:				0.7
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
secondary metabolism	FunCat	9	0.000	2	0.004
triterpene, sterol, and brassinosteroid metabolism	LitPath	9	0.000	2	0.015
pentacyclic triterpenoid biosynthesis	TAIR-GO	7	0.000	1	0.001
triterpene biosynthesis	LitPath	7	0.000	1	0.003
Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)						CYP714A2 (At5g24900)
max. difference between log2-ratios:				1.0
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Cell Wall Carbohydrate Metabolism	BioPath	8	0.000	2	0.016
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP714A2 (At5g24900)
max. difference between log2-ratios:				1.4
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Biosynthesis of prenyl diphosphates	BioPath	12	0.000	3	0.000
core phenylpropanoid metabolism	BioPath	10	0.000	1	0.020
Phenylpropanoid Metabolism	BioPath	10	0.000	1	0.204
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)	BioPath	8	0.000	2	0.007
Biosynthesis of steroids	KEGG	8	0.000	2	0.000
Terpenoid biosynthesis	KEGG	8	0.000	2	0.000
prenyl diphosphate (GPP,FPP, GGPP) biosynthesis	LitPath	8	0.000	2	0.000
page created by Juergen Ehlting	05/24/06