Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYPX716A1(At5g36110)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
There are no co-expressed patways common in all 3 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYPX716A1(At5g36110)
max. difference between log2-ratios:				5.8
max. difference between log2-ratios excluding lowest and highest 5%:				3.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Phenylpropanoid Metabolism	BioPath	14	0.000	2	0.005
Glucosyltransferases for benzoic acids	BioPath	10	0.000	1	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYPX716A1(At5g36110)
max. difference between log2-ratios:				6.8
max. difference between log2-ratios excluding lowest and highest 5%:				2.2
						Link to stress heatmap
There are no co-expressed pathways with more than 6 annotation points in this data set
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYPX716A1(At5g36110)
max. difference between log2-ratios:				4.2
max. difference between log2-ratios excluding lowest and highest 5%:				3.1
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Cell Wall Carbohydrate Metabolism	BioPath	10	0.000	1	0.043
GDP-carbohydrate biosynthesis	BioPath	10	0.000	1	0.000
lipoic acid metabolism	TAIR-GO	10	0.000	1	0.000
colanic acid building blocks biosynthesis	AraCyc	10	0.000	1	0.005
dTDP-rhamnose biosynthesis	AraCyc	10	0.000	1	0.003
galactose degradation I	AraCyc	10	0.000	1	0.000
glucose conversion	AraCyc	10	0.000	1	0.003
lactose degradation IV	AraCyc	10	0.000	1	0.000
UDP-glucose conversion	AraCyc	10	0.000	1	0.003
Fructose and mannose metabolism	KEGG	10	0.000	1	0.000
metabolism of acyl-lipids in mitochondria	AcylLipid	10	0.000	1	0.000
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYPX716A1(At5g36110)
max. difference between log2-ratios:				5.3
max. difference between log2-ratios excluding lowest and highest 5%:				2.2
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Photosystems	BioPath	22	0.000	3	0.003
additional photosystem II components	BioPath	16	0.000	2	0.001
ATP synthase components	BioPath	16	0.000	2	0.000
ATP synthesis coupled proton transport	TAIR-GO	16	0.000	2	0.000
proton transport	TAIR-GO	16	0.000	2	0.000
Ribosome	KEGG	12	0.042	2	0.137
Miscellaneous acyl lipid metabolism	AcylLipid	12	0.000	2	0.000
Intermediary Carbon Metabolism	BioPath	10	0.030	1	0.244
starch metabolism	BioPath	10	0.000	1	0.013
fatty acid biosynthesis	TAIR-GO	10	0.000	1	0.013
proton-transporting ATP synthase, catalytic core (sensu Eukaryota)	TAIR-GO	10	0.000	1	0.000
starch catabolism	TAIR-GO	10	0.000	1	0.000
Calvin cycle	AraCyc	10	0.000	1	0.012
fatty acid oxidation pathway	AraCyc	10	0.000	1	0.003
octane oxidation	AraCyc	10	0.000	1	0.001
starch degradation	AraCyc	10	0.000	1	0.002
C-compound and carbohydrate utilization	FunCat	10	0.000	1	0.000
energy	FunCat	10	0.000	1	0.000
glycolysis and gluconeogenesis	FunCat	10	0.005	1	0.145
metabolism of energy reserves (e.g. glycogen, trehalose)	FunCat	10	0.000	1	0.000
photosynthesis	FunCat	10	0.000	1	0.026
protein synthesis	FunCat	10	0.006	2	0.033
Carbon fixation	KEGG	10	0.000	1	0.043
Fatty acid metabolism	KEGG	10	0.000	1	0.013
Glyoxylate and dicarboxylate metabolism	KEGG	10	0.000	1	0.009
Starch and sucrose metabolism	KEGG	10	0.000	1	0.056
pentacyclic triterpenoid biosynthesis	TAIR-GO	7	0.000	1	0.004
isoprenoid biosynthesis	FunCat	7	0.004	1	0.047
lipid, fatty acid and isoprenoid biosynthesis	FunCat	7	0.002	1	0.037
Biosynthesis of steroids	KEGG	7	0.001	1	0.023
triterpene biosynthesis	LitPath	7	0.000	1	0.002
triterpene, sterol, and brassinosteroid metabolism	LitPath	7	0.001	1	0.079
Translation factors	KEGG	6.5	0.002	2	0.009
page created by Alexandre OLRY	05/23/06