Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP716A2 (At5g36140) save all data as Tab Delimited Table










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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






monoterpene biosynthesis LitPath 46 5






monoterpene biosynthesis LitPath 46 5






transport FunCat 39 8








jasmonic acid biosynthesis AraCyc 38 5
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than10 annotation points)
CYP716A2 (At5g36140)







max. difference between log2-ratios: 4.3











max. difference between log2-ratios excluding lowest and highest 5%: 2.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Stilbene, coumarine and lignin biosynthesis KEGG 46 0.000 17 0.000










Phenylalanine metabolism KEGG 45 0.000 17 0.000


Methane metabolism KEGG 36 0.000 16 0.000

Prostaglandin and leukotriene metabolism KEGG 36 0.000 16 0.000

mono-/sesqui-/di-terpene biosynthesis LitPath 27 0.000 4 0.007

terpenoid metabolism LitPath 27 0.000 4 0.008

Phenylpropanoid Metabolism BioPath 22 0.000 6 0.002

Miscellaneous acyl lipid metabolism AcylLipid 22 0.000 11 0.000

triterpene, sterol, and brassinosteroid metabolism LitPath 21 0.005 6 0.015

monoterpenoid biosynthesis TAIR-GO 19 0.000 2 0.000

detoxification FunCat 19 0.000 6 0.000

monoterpene biosynthesis LitPath 19 0.000 2 0.001

Lipid signaling AcylLipid 18 0.019 3 0.596

cation transport (Na, K, Ca , NH4, etc.) FunCat 17 0.000 2 0.000

heavy metal ion transport (Cu, Fe, etc.) FunCat 17 0.000 2 0.000










ion transport FunCat 17 0.000 2 0.000










transport FunCat 17 0.000 2 0.000










transport facilitation FunCat 17 0.000 2 0.000










transported compounds (substrates) FunCat 17 0.000 2 0.000










isoprenoid biosynthesis FunCat 14 0.000 3 0.018










lipid, fatty acid and isoprenoid biosynthesis FunCat 14 0.000 3 0.011










Biosynthesis of steroids KEGG 13 0.002 2 0.085










triterpene biosynthesis LitPath 13 0.000 2 0.006










Fatty acid elongation and wax and cutin metabolism AcylLipid 12 0.003 2 0.276










biosynthesis of secondary products derived from primary amino acids FunCat 11 0.000 3 0.000










detoxification involving cytochrome P450 FunCat 11 0.000 2 0.001










Arginine and proline metabolism KEGG 11 0.000 2 0.068












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP716A2 (At5g36140)







max. difference between log2-ratios: 3.3











max. difference between log2-ratios excluding lowest and highest 5%: 0.6

















Link to stress heatmap






There are no co-expressed pathways with more than 6 annotation points



















































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP716A2 (At5g36140)







max. difference between log2-ratios: 2.7











max. difference between log2-ratios excluding lowest and highest 5%: 1.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






transport FunCat 12 0.000 2 0.000





transport facilitation FunCat 12 0.000 2 0.000




transported compounds (substrates) FunCat 12 0.000 2 0.000




Transporters required for plastid development BioPath 10 0.000 1 0.000










iron ion homeostasis TAIR-GO 10 0.000 1 0.000










cation transport (Na, K, Ca , NH4, etc.) FunCat 10 0.000 1 0.000










heavy metal ion transport (Cu, Fe, etc.) FunCat 10 0.000 1 0.000










ion transport FunCat 10 0.000 1 0.000










Leaf Glycerolipid Biosynthesis BioPath 7 0.001 1 0.038










Leaf Glycerolipid Biosynthesis in Plastid BioPath 7 0.000 1 0.004










fatty acid desaturation TAIR-GO 7 0.000 1 0.000










photoinhibition TAIR-GO 7 0.000 1 0.000










glycosylglyceride desaturation pathway AraCyc 7 0.000 1 0.000










Synthesis of membrane lipids in plastids AcylLipid 7 0.000 1 0.001





























































Pathways co-expressed in the Mutant data set (with more than 19 annotation points)
CYP716A2 (At5g36140)







max. difference between log2-ratios: 7.0











max. difference between log2-ratios excluding lowest and highest 5%: 2.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Cell Wall Carbohydrate Metabolism BioPath 125.5 0.000 39 0.000



pectin metabolism BioPath 66.5 0.000 29 0.000


triterpene, sterol, and brassinosteroid metabolism LitPath 57 0.000 12 0.006


Starch and sucrose metabolism KEGG 41 0.000 7 0.008


Biosynthesis of steroids KEGG 37 0.000 7 0.000


intracellular signalling FunCat 35 0.000 7 0.007


Lipid signaling AcylLipid 31 0.002 6 0.252


Pyruvate metabolism KEGG 29 0.000 6 0.021


nucleotide metabolism FunCat 28 0.000 6 0.000


biogenesis of cell wall FunCat 26 0.000 10 0.000


lipases pathway AraCyc 25 0.000 4 0.006


mono-/sesqui-/di-terpene biosynthesis LitPath 25 0.000 5 0.062


terpenoid metabolism LitPath 25 0.000 5 0.071


triterpene biosynthesis LitPath 25 0.000 4 0.001










Nucleotide Metabolism KEGG 24 0.000 5 0.075










Pyrimidine metabolism KEGG 24 0.000 5 0.004










Leaf Glycerolipid Biosynthesis in Plastid BioPath 22 0.025 3 0.439










pentacyclic triterpenoid biosynthesis TAIR-GO 21 0.000 3 0.000










cellular response to phosphate starvation TAIR-GO 20 0.000 2 0.001










lipid biosynthesis TAIR-GO 20 0.000 2 0.000










(deoxy)ribose phosphate degradation AraCyc 20 0.000 4 0.000










glycosylglyceride biosynthesis AraCyc 20 0.000 2 0.003










energy FunCat 20 0.000 3 0.000










lipid, fatty acid and isoprenoid biosynthesis FunCat 20 0.045 4 0.144










lipid, fatty acid and isoprenoid metabolism FunCat 20 0.006 2 0.367










metabolism of energy reserves (e.g. glycogen, trehalose) FunCat 20 0.000 3 0.000










pyrimidine nucleotide metabolism FunCat 20 0.000 4 0.001










Glycolysis / Gluconeogenesis KEGG 20 0.020 5 0.079










Synthesis of membrane lipids in plastids AcylLipid 20 0.000 2 0.038



























page created by Alexandre OLRY 05/23/06