Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71A13 (At2g30770) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.































there are no pathways co-expressed in all four data sets
























To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page









































































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP71A13 (At2g30770)







max. difference between log2-ratios: 5.9











max. difference between log2-ratios excluding lowest and highest 5%: 2.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Cell Wall Carbohydrate Metabolism BioPath 8 0.000 1 0.043


cellulose biosynthesis BioPath 8 0.000 1 0.001

hemicellulose biosynthesis BioPath 8 0.000 1 0.000

Fructose and mannose metabolism KEGG 8 0.000 1 0.007

Glycan Biosynthesis and Metabolism KEGG 8 0.000 1 0.013










Glycerolipid metabolism KEGG 8 0.000 1 0.004












































Pathways co-expressed in the Stress data set ( with more than 15 annotation points)
CYP71A13 (At2g30770)







max. difference between log2-ratios: 11.2











max. difference between log2-ratios excluding lowest and highest 5%: 6.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Phenylpropanoid Metabolism BioPath 117 0.000 16 0.000
Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 94 0.000 12 0.000
Shikimate pathway LitPath 94 0.000 12 0.000
tryptophan biosynthesis TAIR-GO 88 0.000 11 0.000
Trp biosyntesis LitPath 88 0.000 11 0.000
Intermediary Carbon Metabolism BioPath 78 0.000 17 0.000
tryptophan biosynthesis AraCyc 78 0.000 10 0.000
Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 74 0.000 9 0.000
Biosynthesis of Amino Acids and Derivatives BioPath 64 0.000 10 0.015
C-compound and carbohydrate metabolism FunCat 60.5 0.000 15 0.000
response to pathogenic bacteria TAIR-GO 54 0.000 8 0.000
amino acid metabolism FunCat 50 0.000 7 0.003
Glutathione metabolism KEGG 50 0.000 8 0.000
Gluconeogenesis from lipids in seeds BioPath 46 0.000 6 0.005










Citrate cycle (TCA cycle) KEGG 44 0.000 10 0.000










toxin catabolism TAIR-GO 42 0.000 9 0.000










Glutathione metabolism BioPath 40 0.000 6 0.006










Stilbene, coumarine and lignin biosynthesis KEGG 37 0.000 8 0.006










tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) FunCat 34 0.000 9 0.000










glycolysis and gluconeogenesis FunCat 30.5 0.000 7 0.006










Fatty acid metabolism KEGG 30 0.000 3 0.027










Miscellaneous acyl lipid metabolism AcylLipid 26 0.000 6 0.053










Arginine and proline metabolism KEGG 24 0.000 4 0.013










Carbon fixation KEGG 24 0.002 4 0.070










Phenylalanine metabolism KEGG 24 0.000 6 0.028










lipid, fatty acid and isoprenoid degradation FunCat 22 0.000 3 0.004










Glycolysis / Gluconeogenesis KEGG 22 0.029 4 0.121










Pyruvate metabolism KEGG 22 0.029 4 0.098










Degradation of storage lipids and straight fatty acids AcylLipid 22 0.000 3 0.017










leucine biosynthesis AraCyc 20 0.000 5 0.000










response to stress TAIR-GO 19 0.000 2 0.000










IAA biosynthesis AraCyc 19 0.000 2 0.003










lignin biosynthesis AraCyc 18 0.000 3 0.028










TCA cycle -- aerobic respiration AraCyc 18 0.000 4 0.008










TCA cycle variation VII AraCyc 18 0.012 4 0.037










TCA cycle variation VIII AraCyc 18 0.000 4 0.009










Glycine, serine and threonine metabolism KEGG 18 0.000 3 0.033










Propanoate metabolism KEGG 18 0.000 3 0.018










Ascorbate and aldarate metabolism KEGG 17 0.000 2 0.052










Fluorene degradation KEGG 17 0.000 2 0.013










gamma-Hexachlorocyclohexane degradation KEGG 17 0.000 2 0.019










defense response TAIR-GO 16 0.000 2 0.024










nitrogen compound metabolism TAIR-GO 16 0.000 2 0.000










asparagine biosynthesis I AraCyc 16 0.000 2 0.001










asparagine degradation I AraCyc 16 0.000 2 0.007










aspartate biosynthesis and degradation AraCyc 16 0.000 2 0.000










aspartate degradation I AraCyc 16 0.000 2 0.030










aspartate degradation II AraCyc 16 0.000 2 0.008










glutamine degradation III AraCyc 16 0.000 2 0.002










metabolism of the aspartate family FunCat 16 0.000 2 0.001












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP71A13 (At2g30770)







max. difference between log2-ratios: 6.9











max. difference between log2-ratios excluding lowest and highest 5%: 2.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Phenylpropanoid Metabolism BioPath 33 0.000 5 0.011





Gluconeogenesis from lipids in seeds BioPath 29 0.000 4 0.001




Degradation of storage lipids and straight fatty acids AcylLipid 27 0.000 3 0.000




lipid, fatty acid and isoprenoid degradation FunCat 22 0.000 3 0.000




Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 20 0.000 2 0.023




tryptophan biosynthesis TAIR-GO 20 0.000 2 0.001




Fatty acid metabolism KEGG 20 0.000 2 0.004




Shikimate pathway LitPath 20 0.000 2 0.017




Trp biosyntesis LitPath 20 0.000 2 0.001




fatty acid beta oxidation complex BioPath 19 0.000 3 0.000




hypersensitive response TAIR-GO 14 0.000 2 0.000




amino acid metabolism FunCat 14 0.000 2 0.058




core phenylpropanoid metabolism BioPath 12 0.000 2 0.013










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 12 0.000 2 0.009










Phenylpropanoid pathway LitPath 12 0.010 2 0.100










Stilbene, coumarine and lignin biosynthesis KEGG 11 0.000 3 0.016










Regulatory enzymes BioPath 10 0.000 1 0.000










carotenoid biosynthesis TAIR-GO 10 0.000 1 0.004










fatty acid metabolism TAIR-GO 10 0.000 1 0.036










long-chain fatty acid metabolism TAIR-GO 10 0.000 1 0.017










plastid organization and biogenesis TAIR-GO 10 0.000 1 0.001










response to bacteria TAIR-GO 10 0.000 1 0.000










response to high light intensity TAIR-GO 10 0.000 1 0.000










response to temperature TAIR-GO 10 0.000 1 0.000










mixed acid fermentation AraCyc 10 0.000 1 0.043










sorbitol fermentation AraCyc 10 0.001 1 0.130










tryptophan biosynthesis AraCyc 10 0.000 1 0.025










biogenesis of cell wall FunCat 10 0.000 1 0.105










metabolism of the cysteine - aromatic group FunCat 10 0.000 1 0.003










Accessory protein/regulatory protein LitPath 10 0.000 1 0.000










ethylene biosynthesis TAIR-GO 9 0.000 1 0.004










acrylonitrile degradation AraCyc 9 0.000 1 0.001










aldoxime degradation AraCyc 9 0.000 1 0.001










IAA biosynthesis AraCyc 9 0.000 1 0.005










IAA biosynthesis I AraCyc 9 0.000 1 0.003










nitrogen and sulfur utilization FunCat 9 0.000 1 0.004










Benzoate degradation via CoA ligation KEGG 9 0.001 1 0.224










Cyanoamino acid metabolism KEGG 9 0.000 1 0.025










Nitrogen metabolism KEGG 9 0.000 1 0.040










Nucleotide Metabolism KEGG 9 0.002 1 0.176










Pyrimidine metabolism KEGG 9 0.000 1 0.060










Tryptophan metabolism KEGG 9 0.000 1 0.045










ascorbic acid biosynthesis BioPath 8 0.000 2 0.002










4-hydroxyproline degradation AraCyc 8 0.000 1 0.005










arginine degradation IX AraCyc 8 0.000 1 0.005










proline degradation I AraCyc 8 0.000 1 0.018










proline degradation II AraCyc 8 0.000 1 0.005










fatty acid beta-oxidation TAIR-GO 7 0.000 1 0.002










indole phytoalexin biosynthesis TAIR-GO 7 0.000 1 0.000










L-serine biosynthesis TAIR-GO 7 0.000 1 0.000





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP71A13 (At2g30770)







max. difference between log2-ratios: 7.8











max. difference between log2-ratios excluding lowest and highest 5%: 3.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Shikimate pathway LitPath 78 0.000 10 0.000



Phenylpropanoid Metabolism BioPath 75 0.000 11 0.000


tryptophan biosynthesis TAIR-GO 74 0.000 9 0.000


Trp biosyntesis LitPath 74 0.000 9 0.000


Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 72 0.000 9 0.000


tryptophan biosynthesis AraCyc 64 0.000 8 0.000


Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 48 0.000 6 0.000


response to pathogenic bacteria TAIR-GO 44 0.000 6 0.000


response to wounding TAIR-GO 16 0.000 2 0.003


Stilbene, coumarine and lignin biosynthesis KEGG 13 0.000 3 0.040


cellulose biosynthesis BioPath 12 0.000 2 0.013


Alanine and aspartate metabolism KEGG 12 0.000 2 0.007


beta-Alanine metabolism KEGG 12 0.000 2 0.002


Butanoate metabolism KEGG 12 0.000 2 0.004










Glutamate metabolism KEGG 12 0.000 2 0.018










Phenylalanine metabolism KEGG 12 0.000 3 0.026










Taurine and hypotaurine metabolism KEGG 12 0.000 2 0.000










Benzoate degradation via CoA ligation KEGG 11 0.003 2 0.110










Inositol phosphate metabolism KEGG 11 0.006 2 0.133










Nicotinate and nicotinamide metabolism KEGG 11 0.001 2 0.091










anthranilate synthase complex TAIR-GO 10 0.000 1 0.000










alanine biosynthesis II AraCyc 10 0.000 2 0.000










phenylalanine biosynthesis II AraCyc 10 0.000 2 0.000










amino acid metabolism FunCat 10 0.000 1 0.076










metabolism of the cysteine - aromatic group FunCat 10 0.000 1 0.001










N-terminal protein myristoylation TAIR-GO 9 0.000 1 0.009










Glycan Biosynthesis and Metabolism KEGG 9 0.008 2 0.049










hemicellulose biosynthesis BioPath 8 0.000 1 0.013










toxin catabolism TAIR-GO 8 0.000 4 0.000










Fructose and mannose metabolism KEGG 8 0.009 1 0.121










Glycerolipid metabolism KEGG 8 0.002 1 0.069










Lipid signaling AcylLipid 8 0.025 3 0.069










Miscellaneous acyl lipid metabolism AcylLipid 8 0.013 3 0.088










defense response TAIR-GO 7 0.002 1 0.030










indole phytoalexin biosynthesis TAIR-GO 7 0.000 1 0.000










salicylic acid biosynthesis TAIR-GO 7 0.000 1 0.000










camalexin biosynthesis AraCyc 7 0.000 1 0.000










Ascorbate and aldarate metabolism KEGG 7 0.002 1 0.042










Fluorene degradation KEGG 7 0.000 1 0.016










gamma-Hexachlorocyclohexane degradation KEGG 7 0.000 1 0.020










camalexin biosynthesis LitPath 7 0.000 1 0.000



























page created by Vincent Sauveplane 05/02/06