| _________________________________________ |
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| Pathways co-expressed in the two applicable data sets (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| abscisic acid biosynthesis |
TAIR-GO |
36 |
6 |
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| abscisic acid biosynthesis |
TAIR-GO |
36 |
6 |
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| abscisic acid biosynthesis |
TAIR-GO |
36 |
6 |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
22 |
4 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) |
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CYP71A15 (At5g24950) |
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| max. difference between log2-ratios: |
7.2 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.5 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| C-compound and carbohydrate metabolism |
FunCat |
21 |
0.000 |
5 |
0.036 |
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| Synthesis and storage of oil |
AcylLipid |
20 |
0.000 |
6 |
0.000 |
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| glycolysis and gluconeogenesis |
FunCat |
16 |
0.000 |
3 |
0.024 |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
14 |
0.008 |
3 |
0.183 |
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| sucrose biosynthesis |
AraCyc |
14 |
0.000 |
2 |
0.001 |
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| abscisic acid biosynthesis |
TAIR-GO |
12 |
0.000 |
2 |
0.000 |
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| abscisic acid biosynthesis |
AraCyc |
12 |
0.000 |
2 |
0.000 |
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| abscisic acid biosynthesis |
LitPath |
12 |
0.000 |
2 |
0.000 |
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| Carotenoid and abscisic acid metabolism |
LitPath |
12 |
0.000 |
2 |
0.007 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
10.5 |
0.011 |
4 |
0.008 |
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| Biosynthesis of prenyl diphosphates |
BioPath |
10 |
0.000 |
1 |
0.035 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
10 |
0.000 |
1 |
0.067 |
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| Leaf Glycerolipid Biosynthesis |
BioPath |
10 |
0.034 |
3 |
0.027 |
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| Leaf Glycerolipid Biosynthesis in Plastid |
BioPath |
10 |
0.000 |
3 |
0.000 |
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| sucrose metabolism |
BioPath |
10 |
0.000 |
1 |
0.007 |
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| acyl-CoA binding |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| dolichol biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| lipid transport |
TAIR-GO |
10 |
0.000 |
1 |
0.002 |
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| response to hypoxia |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| sucrose degradation III |
AraCyc |
10 |
0.000 |
1 |
0.010 |
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| isoprenoid biosynthesis |
FunCat |
10 |
0.000 |
2 |
0.020 |
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| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
10 |
0.000 |
2 |
0.014 |
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| Starch and sucrose metabolism |
KEGG |
10 |
0.000 |
1 |
0.002 |
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| polyprenyl diphosphate biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.010 |
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| fatty acid elongation |
TAIR-GO |
8 |
0.000 |
1 |
0.002 |
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| fatty acid metabolism |
TAIR-GO |
8 |
0.000 |
1 |
0.026 |
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| long-chain fatty acid metabolism |
TAIR-GO |
8 |
0.000 |
1 |
0.012 |
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| very-long-chain fatty acid metabolism |
TAIR-GO |
8 |
0.000 |
1 |
0.010 |
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| secondary metabolism |
TAIR-GO |
7 |
0.000 |
1 |
0.000 |
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| degradation |
FunCat |
7 |
0.000 |
1 |
0.025 |
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| protein degradation |
FunCat |
7 |
0.000 |
1 |
0.014 |
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| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) |
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CYP71A15 (At5g24950) |
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| max. difference between log2-ratios: |
3.3 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
1.3 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
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| Translation factors |
KEGG |
10 |
0.000 |
2 |
0.019 |
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| fatty acid beta oxidation complex |
BioPath |
9 |
0.000 |
1 |
0.001 |
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| Gluconeogenesis from lipids in seeds |
BioPath |
9 |
0.000 |
1 |
0.009 |
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| development |
TAIR-GO |
9 |
0.000 |
1 |
0.002 |
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| flower development |
TAIR-GO |
9 |
0.000 |
1 |
0.000 |
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| seed germination |
TAIR-GO |
9 |
0.000 |
1 |
0.000 |
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| fatty acid oxidation pathway |
AraCyc |
9 |
0.000 |
1 |
0.002 |
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| isoleucine degradation I |
AraCyc |
9 |
0.000 |
1 |
0.003 |
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| isoleucine degradation III |
AraCyc |
9 |
0.000 |
1 |
0.001 |
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| leucine degradation I |
AraCyc |
9 |
0.000 |
1 |
0.003 |
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| leucine degradation II |
AraCyc |
9 |
0.000 |
1 |
0.001 |
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| valine degradation I |
AraCyc |
9 |
0.000 |
1 |
0.007 |
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| valine degradation II |
AraCyc |
9 |
0.000 |
1 |
0.002 |
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| oxidation of fatty acids |
FunCat |
9 |
0.000 |
1 |
0.000 |
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| Degradation of storage lipids and straight fatty acids |
AcylLipid |
9 |
0.000 |
1 |
0.016 |
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| ascorbic acid biosynthesis |
BioPath |
8 |
0.000 |
1 |
0.001 |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
8 |
0.016 |
1 |
0.168 |
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| Glycerolipid metabolism |
KEGG |
8 |
0.000 |
2 |
0.001 |
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