| _________________________________________ |
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| Pathways co-expressed in the 3 applicable data sets (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
80 |
15 |
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| Biosynthesis of steroids |
KEGG |
72 |
11 |
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| triterpene biosynthesis |
LitPath |
54 |
8 |
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| isoprenoid biosynthesis |
FunCat |
47 |
10 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
47 |
10 |
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| pentacyclic triterpenoid biosynthesis |
TAIR-GO |
42 |
6 |
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| secondary metabolism |
FunCat |
41 |
9 |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) |
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CYP71A16 (At5g42590) |
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| max. difference between log2-ratios: |
5.7 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
4.2 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| Stilbene, coumarine and lignin biosynthesis |
KEGG |
54 |
0.000 |
21 |
0.000 |
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| Methane metabolism |
KEGG |
48 |
0.000 |
21 |
0.000 |
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| Phenylalanine metabolism |
KEGG |
44 |
0.000 |
20 |
0.000 |
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| Prostaglandin and leukotriene metabolism |
KEGG |
44 |
0.000 |
20 |
0.000 |
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| Phenylpropanoid Metabolism |
BioPath |
30 |
0.000 |
7 |
0.000 |
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| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
27 |
0.000 |
4 |
0.006 |
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| terpenoid metabolism |
LitPath |
27 |
0.000 |
4 |
0.006 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
26 |
0.000 |
6 |
0.012 |
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| detoxification |
FunCat |
23 |
0.000 |
8 |
0.000 |
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| isoprenoid biosynthesis |
FunCat |
22 |
0.000 |
5 |
0.001 |
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| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
22 |
0.000 |
5 |
0.000 |
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| Glucosyltransferases for benzoic acids |
BioPath |
20 |
0.000 |
2 |
0.000 |
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| Biosynthesis of steroids |
KEGG |
20 |
0.000 |
3 |
0.040 |
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| triterpene biosynthesis |
LitPath |
20 |
0.000 |
3 |
0.000 |
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| monoterpenoid biosynthesis |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
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| monoterpene biosynthesis |
LitPath |
19 |
0.000 |
2 |
0.001 |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
18 |
0.026 |
4 |
0.272 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
18 |
0.000 |
3 |
0.051 |
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| Lipid signaling |
AcylLipid |
18 |
0.012 |
3 |
0.414 |
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| secondary metabolism |
FunCat |
17 |
0.000 |
4 |
0.003 |
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| lactose degradation IV |
AraCyc |
16 |
0.000 |
3 |
0.000 |
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| flavonol biosynthesis |
AraCyc |
15 |
0.000 |
3 |
0.000 |
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| pentacyclic triterpenoid biosynthesis |
TAIR-GO |
14 |
0.000 |
2 |
0.000 |
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| toxin catabolism |
TAIR-GO |
12 |
0.000 |
6 |
0.000 |
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| colanic acid building blocks biosynthesis |
AraCyc |
12 |
0.000 |
2 |
0.027 |
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| dTDP-rhamnose biosynthesis |
AraCyc |
12 |
0.000 |
2 |
0.014 |
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| galactose degradation I |
AraCyc |
12 |
0.000 |
2 |
0.000 |
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| glucose conversion |
AraCyc |
12 |
0.000 |
2 |
0.011 |
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| UDP-glucose conversion |
AraCyc |
12 |
0.000 |
2 |
0.010 |
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| detoxification involving cytochrome P450 |
FunCat |
11 |
0.000 |
2 |
0.001 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) |
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CYP71A16 (At5g42590) |
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| max. difference between log2-ratios: |
5.6 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
2.3 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| Biosynthesis of steroids |
KEGG |
28 |
0.000 |
4 |
0.000 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
28 |
0.000 |
4 |
0.006 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
24 |
0.000 |
3 |
0.001 |
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| sterol biosynthesis |
TAIR-GO |
24 |
0.000 |
3 |
0.000 |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
18 |
0.016 |
2 |
0.436 |
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| Starch and sucrose metabolism |
KEGG |
18 |
0.000 |
2 |
0.003 |
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| sterol biosynthesis |
BioPath |
14 |
0.000 |
2 |
0.001 |
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| pentacyclic triterpenoid biosynthesis |
TAIR-GO |
14 |
0.000 |
2 |
0.000 |
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| sterol biosynthesis |
AraCyc |
14 |
0.000 |
2 |
0.000 |
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| triterpene biosynthesis |
LitPath |
14 |
0.000 |
2 |
0.001 |
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| C-compound and carbohydrate metabolism |
FunCat |
12 |
0.022 |
2 |
0.212 |
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| glycolysis and gluconeogenesis |
FunCat |
12 |
0.000 |
2 |
0.032 |
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| Biosynthesis of prenyl diphosphates |
BioPath |
10 |
0.000 |
1 |
0.038 |
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| sucrose metabolism |
BioPath |
10 |
0.000 |
1 |
0.008 |
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| isoprenoid biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| tryptophan catabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| glucosinolate biosynthesis from tryptophan |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| IAA biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| IAA biosynthesis I |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| mevalonate pathway |
AraCyc |
10 |
0.000 |
1 |
0.001 |
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| lipid, fatty acid and isoprenoid metabolism |
FunCat |
10 |
0.000 |
1 |
0.025 |
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| Galactose metabolism |
KEGG |
10 |
0.000 |
1 |
0.007 |
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| Glucosinolate Metabolism |
LitPath |
10 |
0.001 |
1 |
0.048 |
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| IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.053 |
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| mevalonate pathway, cytosol |
LitPath |
10 |
0.000 |
1 |
0.017 |
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| sterol biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.002 |
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| secondary metabolism |
FunCat |
9 |
0.000 |
2 |
0.005 |
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| Leaf Glycerolipid Biosynthesis in Plastid |
BioPath |
8 |
0.003 |
2 |
0.007 |
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| pectin metabolism |
BioPath |
8 |
0.005 |
1 |
0.290 |
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| isoprenoid biosynthesis |
FunCat |
8 |
0.000 |
2 |
0.006 |
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| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
8 |
0.000 |
2 |
0.004 |
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| storage protein |
FunCat |
8 |
0.000 |
2 |
0.000 |
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| Pentose and glucuronate interconversions |
KEGG |
8 |
0.000 |
1 |
0.002 |
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| Lipid signaling |
AcylLipid |
8 |
0.004 |
2 |
0.050 |
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| Synthesis of fatty acids in plastids |
AcylLipid |
8 |
0.000 |
2 |
0.002 |
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| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) |
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CYP71A16 (At5g42590) |
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| max. difference between log2-ratios: |
6.8 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
4.7 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
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| Ribosome |
KEGG |
40 |
0.000 |
7 |
0.009 |
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| Intermediary Carbon Metabolism |
BioPath |
34 |
0.000 |
5 |
0.007 |
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| glycolysis and gluconeogenesis |
FunCat |
34 |
0.000 |
5 |
0.007 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
26 |
0.000 |
5 |
0.000 |
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| Biosynthesis of steroids |
KEGG |
24 |
0.000 |
4 |
0.000 |
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| Gluconeogenesis from lipids in seeds |
BioPath |
22 |
0.000 |
3 |
0.007 |
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| Photosystems |
BioPath |
22 |
0.000 |
3 |
0.030 |
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| acetate fermentation |
AraCyc |
22 |
0.000 |
3 |
0.003 |
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| fructose degradation (anaerobic) |
AraCyc |
22 |
0.000 |
3 |
0.002 |
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| glycerol degradation II |
AraCyc |
22 |
0.000 |
3 |
0.001 |
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| glycolysis I |
AraCyc |
22 |
0.000 |
3 |
0.027 |
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| glycolysis IV |
AraCyc |
22 |
0.000 |
3 |
0.002 |
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| sorbitol fermentation |
AraCyc |
22 |
0.000 |
3 |
0.003 |
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| Glycolysis / Gluconeogenesis |
KEGG |
22 |
0.000 |
3 |
0.012 |
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| triterpene biosynthesis |
LitPath |
20 |
0.000 |
3 |
0.000 |
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| isoprenoid biosynthesis |
FunCat |
17 |
0.000 |
3 |
0.012 |
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| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
17 |
0.000 |
3 |
0.007 |
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| additional photosystem II components |
BioPath |
16 |
0.000 |
2 |
0.009 |
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| ATP synthase components |
BioPath |
16 |
0.000 |
2 |
0.000 |
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| ATP synthesis coupled proton transport |
TAIR-GO |
16 |
0.000 |
2 |
0.000 |
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| proton transport |
TAIR-GO |
16 |
0.000 |
2 |
0.000 |
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| Calvin cycle |
AraCyc |
16 |
0.000 |
2 |
0.005 |
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| gluconeogenesis |
AraCyc |
16 |
0.000 |
2 |
0.007 |
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| glyceraldehyde 3-phosphate degradation |
AraCyc |
16 |
0.000 |
2 |
0.001 |
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| Carbon fixation |
KEGG |
16 |
0.000 |
2 |
0.041 |
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| secondary metabolism |
FunCat |
15 |
0.000 |
3 |
0.011 |
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| pentacyclic triterpenoid biosynthesis |
TAIR-GO |
14 |
0.000 |
2 |
0.000 |
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| Phenylalanine metabolism |
KEGG |
12 |
0.000 |
2 |
0.082 |
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