Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71A18 (At1g11610) save all data as Tab Delimited Table










_________________________________________














Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are no co-expressed pathways common in all data sets



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP71A18 (At1g11610)







max. difference between log2-ratios: 6.0











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Lipid signaling AcylLipid 52 0.000 12 0.000


Cell Wall Carbohydrate Metabolism BioPath 50 0.000 14 0.000

Inositol phosphate metabolism KEGG 32 0.000 9 0.000

pectin metabolism BioPath 28 0.000 9 0.000

Synthesis of membrane lipids in endomembrane system AcylLipid 24 0.000 3 0.138

Leaf Glycerolipid Biosynthesis BioPath 19 0.042 3 0.311

Leaf Glycerolipid Biosynthesis in cytosol / ER BioPath 19 0.000 3 0.001

cellulose biosynthesis BioPath 18 0.000 4 0.001

Phosphatidylinositol signaling system KEGG 18 0.000 3 0.003

Signal Transduction KEGG 18 0.000 3 0.003

Glycan Biosynthesis and Metabolism KEGG 17 0.000 2 0.093

Intermediary Carbon Metabolism BioPath 16 0.013 4 0.107

Fructose and mannose metabolism KEGG 16 0.000 3 0.008










Benzoate degradation via CoA ligation KEGG 14 0.000 6 0.001










Nicotinate and nicotinamide metabolism KEGG 14 0.000 6 0.000










biogenesis of cell wall FunCat 12 0.000 5 0.000










glycolysis and gluconeogenesis FunCat 12 0.004 3 0.086












































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP71A18 (At1g11610)







max. difference between log2-ratios: 6.6











max. difference between log2-ratios excluding lowest and highest 5%: 0.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Phenylpropanoid Metabolism BioPath 8 0.000 2 0.001












Pathways co-expressed in the Hormone etc. data set (with more than 7 annotation points)
CYP71A18 (At1g11610)







max. difference between log2-ratios: 1.8











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Phenylpropanoid Metabolism BioPath 50 0.000 8 0.000





Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 48 0.000 7 0.000




tryptophan biosynthesis TAIR-GO 48 0.000 7 0.000




tryptophan biosynthesis AraCyc 48 0.000 7 0.000




Shikimate pathway LitPath 48 0.000 7 0.000




Trp biosyntesis LitPath 48 0.000 7 0.000




response to pathogenic bacteria TAIR-GO 38 0.000 6 0.000




Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 22 0.000 3 0.001




Stilbene, coumarine and lignin biosynthesis KEGG 17 0.000 6 0.000




Purine metabolism KEGG 16 0.000 2 0.031










Synthesis of membrane lipids in endomembrane system AcylLipid 12 0.000 3 0.002










Glutathione metabolism BioPath 10 0.001 1 0.110










sulfate assimilation TAIR-GO 10 0.000 1 0.002










dissimilatory sulfate reduction AraCyc 10 0.000 1 0.001










sulfate assimilation III AraCyc 10 0.000 1 0.014










biogenesis of chloroplast FunCat 10 0.000 1 0.057










nitrogen and sulfur utilization FunCat 10 0.000 1 0.002










Methane metabolism KEGG 10 0.000 5 0.000










Phenylalanine metabolism KEGG 10 0.000 5 0.000










Prostaglandin and leukotriene metabolism KEGG 10 0.000 5 0.000










Selenoamino acid metabolism KEGG 10 0.000 1 0.046










Sulfur metabolism KEGG 10 0.000 1 0.026





























































Pathways co-expressed in the Mutant data set (with more than 20 annotation points)
CYP71A18 (At1g11610)







max. difference between log2-ratios: 10.2











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Phenylpropanoid Metabolism BioPath 93 0.000 17 0.033



Lipid signaling AcylLipid 87 0.000 22 0.000


C-compound and carbohydrate metabolism FunCat 79 0.006 19 0.193


Biosynthesis of Amino Acids and Derivatives BioPath 62 0.011 14 0.132


pectin metabolism BioPath 58.5 0.000 26 0.000


response to pathogenic bacteria TAIR-GO 54 0.000 7 0.000


tryptophan biosynthesis AraCyc 52 0.000 8 0.000


Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 50 0.000 7 0.027


tryptophan biosynthesis TAIR-GO 50 0.000 7 0.000


Shikimate pathway LitPath 50 0.000 7 0.014


Trp biosyntesis LitPath 50 0.000 7 0.000


Nucleotide Metabolism KEGG 42 0.000 8 0.022


Inositol phosphate metabolism KEGG 40 0.000 11 0.006


Purine metabolism KEGG 40 0.000 7 0.016










Phenylpropanoid pathway LitPath 40 0.008 9 0.111










lipases pathway AraCyc 39 0.000 6 0.001










nucleotide metabolism FunCat 38 0.000 8 0.000










Benzoate degradation via CoA ligation KEGG 36 0.000 10 0.009










Nicotinate and nicotinamide metabolism KEGG 36 0.000 10 0.005










Pyrimidine metabolism KEGG 36 0.000 7 0.001










core phenylpropanoid metabolism BioPath 30 0.000 6 0.027










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 30 0.000 4 0.045










lignin biosynthesis AraCyc 30 0.000 5 0.044










triacylglycerol degradation AraCyc 30 0.000 11 0.000










jasmonic acid biosynthesis AraCyc 28 0.000 5 0.000










energy FunCat 28 0.000 6 0.000










intracellular signalling FunCat 28 0.000 7 0.018










metabolism of energy reserves (e.g. glycogen, trehalose) FunCat 28 0.000 6 0.000










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 28 0.000 4 0.085










lipid, fatty acid and isoprenoid degradation FunCat 27 0.000 4 0.023










transcription FunCat 27 0.000 7 0.000










pyrimidine nucleotide metabolism FunCat 26 0.000 5 0.000










Propanoate metabolism KEGG 26 0.000 4 0.022










Transcription KEGG 25 0.002 6 0.128










jasmonic acid biosynthesis TAIR-GO 24 0.000 4 0.001










chlorophyll biosynthesis AraCyc 24 0.006 5 0.087










fructose degradation (anaerobic) AraCyc 24 0.006 7 0.032










sorbitol fermentation AraCyc 24 0.012 7 0.041










biosynthesis of proto- and siroheme AraCyc 22 0.001 4 0.094










trehalose biosynthesis II AraCyc 22 0.005 5 0.100










trehalose biosynthesis III AraCyc 22 0.000 5 0.010










defense response TAIR-GO 21 0.000 3 0.010










RNA synthesis FunCat 21 0.000 5 0.005



























page created by Juergen Ehlting 07/05/06