| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP71A28 (At4g20240) | save all data as Tab Delimited Table | |||||||||||||||
| _________________________________________ | ||||||||||||||||
| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
|
||||||||||||||
| there are only co-expressed pathways in the organ data set | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP71A28 (At4g20240) | |||||||||||||||
| max. difference between log2-ratios: | 3.5 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.7 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| Cell Wall Carbohydrate Metabolism | BioPath | 8 | 0.000 | 1 | 0.016 |
|
||||||||||
| Phytic acid biosynthesis | BioPath | 8 | 0.000 | 1 | 0.000 | |||||||||||
| lipases pathway | AraCyc | 8 | 0.000 | 1 | 0.000 | |||||||||||
| lipid, fatty acid and isoprenoid degradation | FunCat | 8 | 0.000 | 1 | 0.000 | |||||||||||
| Lipid signaling | AcylLipid | 8 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP71A28 (At4g20240) | |||||||||||||||
| max. difference between log2-ratios: | 2.8 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.2 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
|
|
||||||||||||||||
| there are no co-expressed pathways with r>0.5 | ||||||||||||||||
| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP71A28 (At4g20240) | |||||||||||||||
| max. difference between log2-ratios: | 2.5 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.7 | |||||||||||||||
| Link to hormones etc. heatmap | ||||||||||||||||
|
|
||||||||||||||||
| there are no co-expressed pathways with r>0.5 | ||||||||||||||||
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP71A28 (At4g20240) | |||||||||||||||
| max. difference between log2-ratios: | 2.8 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.7 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
|
|
||||||||||||||||
| there are no co-expressed pathways with r>0.5 | ||||||||||||||||
| page created by Vincent Sauveplane | 05/02/06 | |||||||||||||||