Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71A28 (At4g20240) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.































there are only co-expressed pathways in the organ data set




















To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page









































































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP71A28 (At4g20240)







max. difference between log2-ratios: 3.5











max. difference between log2-ratios excluding lowest and highest 5%: 1.7











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Cell Wall Carbohydrate Metabolism BioPath 8 0.000 1 0.016


Phytic acid biosynthesis BioPath 8 0.000 1 0.000










lipases pathway AraCyc 8 0.000 1 0.000










lipid, fatty acid and isoprenoid degradation FunCat 8 0.000 1 0.000










Lipid signaling AcylLipid 8 0.000 1 0.000












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP71A28 (At4g20240)







max. difference between log2-ratios: 2.8











max. difference between log2-ratios excluding lowest and highest 5%: 1.2

















Link to stress heatmap













there are no co-expressed pathways with r>0.5








































































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP71A28 (At4g20240)







max. difference between log2-ratios: 2.5











max. difference between log2-ratios excluding lowest and highest 5%: 1.7

















Link to hormones etc. heatmap


















there are no co-expressed pathways with r>0.5








































































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP71A28 (At4g20240)







max. difference between log2-ratios: 2.8











max. difference between log2-ratios excluding lowest and highest 5%: 1.7

















Link to mutants heatmap
















there are no co-expressed pathways with r>0.5






































page created by Vincent Sauveplane 05/02/06