Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71B16 (At3g26150) save all data as Tab Delimited Table










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Pathways co-expressed in the 3 applicable data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.







Pathway Source Sum of scores Sum of genes







transport FunCat 186 35







Carbon fixation KEGG 137 24







transport facilitation FunCat 120 22







photorespiration AraCyc 96 15
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.








photorespiration AraCyc 96 15




























For more information on how these pathway maps were generated please read the methods page









































































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP71B16 (At3g26150)







max. difference between log2-ratios: 2.0











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

















Link to organ heatmap






there are no co-expressed pathways with r-value greater than 0.5 in this data set





























Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP71B16 (At3g26150)







max. difference between log2-ratios: 3.5











max. difference between log2-ratios excluding lowest and highest 5%: 0.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Photosystems BioPath 96 0.000 13 0.000
Photosystem I BioPath 36 0.000 6 0.000
Photosynthesis KEGG 34 0.000 5 0.000
biogenesis of chloroplast FunCat 32 0.000 4 0.001
additional photosystem II components BioPath 28 0.000 3 0.010
Photosystem II BioPath 28 0.000 4 0.001
Chlorophyll a/b binding proteins BioPath 24 0.000 3 0.001
secondary metabolism FunCat 20 0.000 2 0.031
Glucosinolate Metabolism LitPath 20 0.000 2 0.001
Photosystem II reaction center BioPath 18 0.000 3 0.000
transport FunCat 18 0.000 2 0.000










glycine biosynthesis I AraCyc 17 0.000 3 0.002










photorespiration AraCyc 17 0.000 3 0.001










superpathway of serine and glycine biosynthesis II AraCyc 17 0.000 3 0.000










light harvesting complex BioPath 16 0.000 2 0.000










aerobic respiration FunCat 16 0.000 2 0.001










respiration FunCat 16 0.000 2 0.001










Carbon fixation KEGG 15 0.000 2 0.017










photorespiration TAIR-GO 13 0.000 2 0.000










ATP-dependent proteolysis TAIR-GO 12 0.000 3 0.000










formaldehyde assimilation I (serine pathway) AraCyc 12 0.000 2 0.008










serine-isocitrate lyase pathway AraCyc 12 0.000 2 0.018










Starch and sucrose metabolism KEGG 11 0.001 2 0.025










ATP synthase components BioPath 10 0.000 1 0.019










Cytochrome b6/f complex BioPath 10 0.000 1 0.015










Oxygen-evolving enhancer protein BioPath 10 0.000 1 0.005










Plastocyanin BioPath 10 0.000 1 0.000










starch metabolism BioPath 10 0.008 1 0.139










ATP synthesis coupled proton transport TAIR-GO 10 0.000 1 0.002










chloroplast ATP synthase complex TAIR-GO 10 0.000 1 0.000










extrinsic to photosynthetic water oxidation TAIR-GO 10 0.000 1 0.000










glucosinolate biosynthesis TAIR-GO 10 0.000 1 0.006










glucosinolate catabolism TAIR-GO 10 0.000 1 0.000










hypersensitive response TAIR-GO 10 0.000 1 0.003










photosynthetic water oxidation TAIR-GO 10 0.000 1 0.000










proton transport TAIR-GO 10 0.000 1 0.002










response to bacteria TAIR-GO 10 0.000 1 0.000










response to chemical substance TAIR-GO 10 0.000 1 0.000










response to UV TAIR-GO 10 0.000 1 0.015










colanic acid building blocks biosynthesis AraCyc 10 0.004 1 0.155










dTDP-rhamnose biosynthesis AraCyc 10 0.000 1 0.100










galactose degradation I AraCyc 10 0.000 1 0.003










glucose and glucose-1-phosphate degradation AraCyc 10 0.000 1 0.011










glucose conversion AraCyc 10 0.000 1 0.089










glucosinolate biosynthesis from homomethionine AraCyc 10 0.000 1 0.002










lactose degradation IV AraCyc 10 0.000 1 0.003










peptidoglycan biosynthesis AraCyc 10 0.000 1 0.004










starch biosynthesis AraCyc 10 0.000 1 0.000










sucrose biosynthesis AraCyc 10 0.000 1 0.025










sucrose degradation III AraCyc 10 0.000 1 0.016












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP71B16 (At3g26150)







max. difference between log2-ratios: 0.9











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Cell Wall Carbohydrate Metabolism BioPath 96 0.000 33 0.000





pectin metabolism BioPath 64 0.000 26 0.000




Intermediary Carbon Metabolism BioPath 26 0.012 6 0.380




nucleotide metabolism FunCat 22 0.000 5 0.000




mono-/sesqui-/di-terpene biosynthesis LitPath 22 0.000 4 0.022




terpenoid metabolism LitPath 22 0.000 4 0.025




(deoxy)ribose phosphate degradation AraCyc 20 0.000 4 0.000




biosynthesis of derivatives of homoisopentenyl pyrophosphate FunCat 20 0.000 2 0.016




pyrimidine nucleotide metabolism FunCat 20 0.000 4 0.000




Nucleotide Metabolism KEGG 20 0.000 4 0.044




Pyrimidine metabolism KEGG 20 0.000 4 0.003




Miscellaneous acyl lipid metabolism AcylLipid 20 0.002 8 0.059




Fatty acid elongation and wax and cutin metabolism AcylLipid 19 0.000 6 0.004




Flavonoid and anthocyanin metabolism BioPath 18 0.000 4 0.054










biogenesis of cell wall FunCat 16 0.002 6 0.009










Glycolysis / Gluconeogenesis KEGG 16 0.002 4 0.047










C-compound, carbohydrate catabolism FunCat 14 0.000 3 0.064










plant / fungal specific systemic sensing and response FunCat 14 0.000 2 0.032










plant hormonal regulation FunCat 14 0.000 2 0.032










transport FunCat 14 0.000 4 0.000










transport facilitation FunCat 14 0.000 4 0.000










Ligand-Receptor Interaction KEGG 14 0.000 6 0.000










Starch and sucrose metabolism KEGG 14 0.017 5 0.012










Nitrogen metabolism KEGG 13 0.000 2 0.048










abscisic acid biosynthesis AraCyc 12 0.000 2 0.000










acetate fermentation AraCyc 12 0.002 3 0.046










fructose degradation (anaerobic) AraCyc 12 0.001 3 0.036










glycerol degradation II AraCyc 12 0.000 3 0.012










glycolysis IV AraCyc 12 0.001 3 0.038










mixed acid fermentation AraCyc 12 0.000 3 0.005










non-phosphorylated glucose degradation AraCyc 12 0.000 3 0.004










sorbitol fermentation AraCyc 12 0.002 3 0.042










TCA cycle -- aerobic respiration AraCyc 12 0.000 2 0.067










TCA cycle variation IV AraCyc 12 0.000 2 0.060










TCA cycle variation VII AraCyc 12 0.009 2 0.164










TCA cycle variation VIII AraCyc 12 0.000 2 0.074










Carbon fixation KEGG 12 0.021 3 0.085










Citrate cycle (TCA cycle) KEGG 12 0.000 2 0.087










Ion channels KEGG 12 0.000 5 0.001










Purine metabolism KEGG 12 0.007 3 0.067










abscisic acid biosynthesis LitPath 12 0.000 2 0.007










Carotenoid and abscisic acid metabolism LitPath 12 0.005 2 0.101










flavonoid biosynthesis AraCyc 11 0.000 3 0.002










C-compound, carbohydrate anabolism FunCat 11 0.000 3 0.005










cellulose biosynthesis BioPath 10 0.016 3 0.087










gibberellic acid biosynthesis TAIR-GO 10 0.000 1 0.007










gibberellic acid mediated signaling TAIR-GO 10 0.000 1 0.001










glucosinolate biosynthesis TAIR-GO 10 0.000 1 0.004










monoterpenoid biosynthesis TAIR-GO 10 0.000 1 0.001










oxygen binding TAIR-GO 10 0.000 1 0.000





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP71B16 (At3g26150)







max. difference between log2-ratios: 0.1











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






C-compound and carbohydrate metabolism FunCat 240 0.016 46 0.150



Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 217 0.000 28 0.000


Intermediary Carbon Metabolism BioPath 188 0.000 34 0.023


transport FunCat 154 0.000 29 0.000


Photosystems BioPath 150 0.010 19 0.254


biogenesis of chloroplast FunCat 140 0.000 21 0.000


protein synthesis FunCat 120 0.041 25 0.064


Carbon fixation KEGG 110 0.000 19 0.003


Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 102 0.021 12 0.206


Pyruvate metabolism KEGG 102 0.001 16 0.078


Chlorophyll biosynthesis and breakdown BioPath 100 0.000 12 0.001


chlorophyll and phytochromobilin metabolism LitPath 100 0.000 12 0.001


Glycolysis / Gluconeogenesis KEGG 97 0.005 17 0.077


Glutathione metabolism BioPath 96 0.006 14 0.134










transport facilitation FunCat 96 0.000 17 0.000










Oxidative phosphorylation KEGG 91 0.000 22 0.001










photosynthesis FunCat 86 0.000 13 0.005










Biosynthesis of steroids KEGG 85 0.006 9 0.224










chlorophyll biosynthesis AraCyc 80 0.000 10 0.188










Sulfur metabolism KEGG 79 0.000 10 0.000










additional photosystem II components BioPath 72 0.001 9 0.085










Glutamate metabolism KEGG 71 0.004 9 0.165










chlorophyll biosynthesis TAIR-GO 70 0.000 7 0.001










Citrate cycle (TCA cycle) KEGG 68 0.000 11 0.030










Selenoamino acid metabolism KEGG 68 0.000 8 0.049










Chlorophyll a/b binding proteins BioPath 66 0.000 8 0.001










development TAIR-GO 65 0.001 8 0.152










Porphyrin and chlorophyll metabolism KEGG 64 0.000 7 0.066










Cysteine metabolism KEGG 63 0.000 9 0.009










sulfate assimilation III AraCyc 62 0.000 9 0.027










cysteine biosynthesis I AraCyc 60 0.000 10 0.035










Shikimate pathway LitPath 58 0.047 9 0.120










Glycerolipid metabolism KEGG 57 0.001 8 0.084










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 56 0.000 6 0.199










sterol biosynthesis BioPath 56 0.001 6 0.112










fatty acid biosynthesis TAIR-GO 56 0.000 7 0.001










Calvin cycle AraCyc 56 0.000 10 0.029










TCA cycle -- aerobic respiration AraCyc 56 0.001 10 0.111










TCA cycle variation VIII AraCyc 56 0.007 10 0.140










Ascorbate and aldarate metabolism KEGG 56 0.000 8 0.015










Synthesis of membrane lipids in endomembrane system AcylLipid 55 0.000 10 0.027










Carotenoid and abscisic acid metabolism LitPath 53 0.000 7 0.016










nucleotide metabolism FunCat 52 0.000 11 0.000










Pentose phosphate pathway KEGG 52 0.005 12 0.012










energy FunCat 51 0.000 11 0.000










sterol biosynthesis TAIR-GO 50 0.000 5 0.114










gluconeogenesis AraCyc 50 0.022 9 0.162










transported compounds (substrates) FunCat 50 0.000 8 0.000










chlorophyll biosynthesis LitPath 50 0.000 5 0.001










Alanine and aspartate metabolism KEGG 47 0.005 6 0.247



























page created by Vincent Sauveplane 05/04/06