Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71B2 (At1g13080) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.































there are no pathways co-expressed in all four data sets




















To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page









































































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP71B2 (At1g13080)







max. difference between log2-ratios: 5.8











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 20 0.000 2 0.004


terpenoid metabolism LitPath 20 0.000 2 0.005

monoterpenoid biosynthesis TAIR-GO 10 0.000 1 0.000

monoterpene biosynthesis AraCyc 10 0.000 1 0.000










plant monoterpene biosynthesis AraCyc 10 0.000 1 0.000










monoterpene biosynthesis LitPath 10 0.000 1 0.001










Phenylpropanoid Metabolism BioPath 8 0.000 2 0.001












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP71B2 (At1g13080)







max. difference between log2-ratios: 2.3











max. difference between log2-ratios excluding lowest and highest 5%: 0.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






glucosinolate biosynthesis TAIR-GO 10 0.000 1 0.000
glucosinolate biosynthesis from homomethionine AraCyc 10 0.000 1 0.000










secondary metabolism FunCat 10 0.000 1 0.000










Glucosinolate Metabolism LitPath 10 0.000 1 0.000












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP71B2 (At1g13080)







max. difference between log2-ratios: 5.2











max. difference between log2-ratios excluding lowest and highest 5%: 2.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Biosynthesis of Amino Acids and Derivatives BioPath 50 0.000 8 0.033





Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 44 0.000 5 0.024




Glucosinolate Metabolism LitPath 40 0.000 4 0.000




Gluconeogenesis from lipids in seeds BioPath 36 0.000 5 0.009




Fatty acid elongation and wax and cutin metabolism AcylLipid 36 0.000 8 0.001




colanic acid building blocks biosynthesis AraCyc 28 0.000 5 0.018




amino acid metabolism FunCat 26 0.008 3 0.186




isoprenoid biosynthesis FunCat 25 0.000 4 0.010




lipid, fatty acid and isoprenoid biosynthesis FunCat 25 0.000 4 0.005




Inositol phosphate metabolism KEGG 25 0.000 6 0.009




fatty acid metabolism TAIR-GO 24 0.000 5 0.000




long-chain fatty acid metabolism TAIR-GO 24 0.000 5 0.000




very-long-chain fatty acid metabolism TAIR-GO 24 0.000 5 0.000




glycerol degradation II AraCyc 24 0.000 3 0.089










ascorbic acid biosynthesis BioPath 22 0.000 3 0.002










cuticle biosynthesis TAIR-GO 22 0.000 4 0.000










GDP-D-rhamnose biosynthesis AraCyc 22 0.000 3 0.001










lactose degradation IV AraCyc 22 0.000 5 0.000










serine-isocitrate lyase pathway AraCyc 22 0.000 4 0.026










biogenesis of cell wall FunCat 22 0.000 3 0.050










indoleacetic acid biosynthesis TAIR-GO 20 0.000 2 0.001










glucosinolate biosynthesis from phenylalanine AraCyc 20 0.000 2 0.000










C-compound and carbohydrate utilization FunCat 20 0.000 3 0.000










Cyanoamino acid metabolism KEGG 20 0.000 3 0.003










Nitrogen metabolism KEGG 20 0.000 2 0.043










ascorbate glutathione cycle AraCyc 18 0.000 2 0.021










formylTHF biosynthesis AraCyc 18 0.000 3 0.004










galactose degradation I AraCyc 18 0.000 4 0.000










glycerol metabolism AraCyc 18 0.000 2 0.017










Ascorbate and aldarate metabolism KEGG 18 0.000 2 0.023










Methionine metabolism KEGG 18 0.000 3 0.001










Chlorophyll biosynthesis and breakdown BioPath 16 0.002 2 0.059










chlorophyll biosynthesis TAIR-GO 16 0.000 2 0.015










atty acid elongation -- unsaturated AraCyc 16 0.000 4 0.001










fatty acid biosynthesis -- initial steps AraCyc 16 0.001 4 0.006










fatty acid elongation -- saturated AraCyc 16 0.000 4 0.001










fatty acid elongation -- unsaturated AraCyc 16 0.000 4 0.000










sulfate assimilation III AraCyc 16 0.028 3 0.034










Glutamate metabolism KEGG 16 0.002 2 0.088










transport FunCat 15 0.000 3 0.000










Fructose and mannose metabolism KEGG 14.5 0.006 3 0.026










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 14 0.000 2 0.046










wax biosynthesis TAIR-GO 14 0.000 2 0.002










formaldehyde assimilation I (serine pathway) AraCyc 14 0.004 3 0.034










methionine biosynthesis II AraCyc 14 0.000 2 0.011










Phenylalanine metabolism KEGG 14 0.017 3 0.166










Selenoamino acid metabolism KEGG 14 0.001 2 0.036










Flavonoid and anthocyanin metabolism BioPath 13 0.002 3 0.060










transport ATPases FunCat 13 0.000 2 0.031










transport facilitation FunCat 13 0.000 2 0.000





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP71B2 (At1g13080)







max. difference between log2-ratios: 5.1











max. difference between log2-ratios excluding lowest and highest 5%: 0.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Cell Wall Carbohydrate Metabolism BioPath 203.5 0.000 64 0.000



C-compound and carbohydrate metabolism FunCat 119 0.000 30 0.036


Ribosome KEGG 101 0.029 21 0.316


Phenylpropanoid Metabolism BioPath 94 0.016 18 0.474


pectin metabolism BioPath 92.5 0.000 42 0.000


mono-/sesqui-/di-terpene biosynthesis LitPath 62 0.000 11 0.001


terpenoid metabolism LitPath 62 0.000 11 0.001


Lipid signaling AcylLipid 61 0.005 14 0.164


Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 56 0.000 9 0.128


Nucleotide Metabolism KEGG 47 0.000 10 0.031


Starch and sucrose metabolism KEGG 45 0.000 11 0.012


Pyruvate metabolism KEGG 44 0.000 8 0.102


Purine metabolism KEGG 41 0.000 8 0.040


Biosynthesis of prenyl diphosphates BioPath 40 0.001 7 0.090










transport FunCat 40 0.000 11 0.000










biogenesis of cell wall FunCat 38 0.000 13 0.001










lipases pathway AraCyc 37 0.000 6 0.004










cellulose biosynthesis BioPath 36 0.000 8 0.044










Flavonoid and anthocyanin metabolism BioPath 36 0.000 8 0.125










transport facilitation FunCat 36 0.000 10 0.000










acetate fermentation AraCyc 34 0.001 9 0.052










nucleotide metabolism FunCat 34 0.000 7 0.000










lipid, fatty acid and isoprenoid degradation FunCat 33 0.000 4 0.074










brassinosteroid biosynthesis LitPath 33 0.001 4 0.179










fructose degradation (anaerobic) AraCyc 32 0.001 9 0.033










glycolysis IV AraCyc 32 0.001 9 0.037










sorbitol fermentation AraCyc 32 0.003 9 0.044










Pyrimidine metabolism KEGG 32 0.000 8 0.003










Translation factors KEGG 32 0.004 10 0.066










Biosynthesis of steroids KEGG 30 0.034 6 0.062










Fatty acid elongation and wax and cutin metabolism AcylLipid 30 0.023 6 0.288










intracellular signalling FunCat 28.5 0.000 7 0.092










C-compound, carbohydrate catabolism FunCat 28 0.000 7 0.020










prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 28 0.000 4 0.054










trans-zeatin biosynthesis AraCyc 27 0.000 6 0.000










proanthocyanidin biosynthesis TAIR-GO 26 0.000 3 0.000










cellulose biosynthesis AraCyc 26 0.003 6 0.068










lactose degradation IV AraCyc 26 0.000 7 0.000










Citrate cycle (TCA cycle) KEGG 26 0.001 4 0.209










Fructose and mannose metabolism KEGG 26 0.006 4 0.283










Nitrogen metabolism KEGG 26 0.004 3 0.233










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 26 0.012 3 0.431










dTDP-rhamnose biosynthesis AraCyc 25 0.000 5 0.143










UDP-N-acetylglucosamine biosynthesis AraCyc 25 0.000 4 0.000










Cyanoamino acid metabolism KEGG 25 0.000 6 0.002










aspartate/ornithin cycle / nitric oxid from glutamate BioPath 24 0.000 4 0.012










sterol biosynthesis BioPath 24 0.020 3 0.299










TCA cycle -- aerobic respiration AraCyc 24 0.015 6 0.091










TCA cycle variation IV AraCyc 24 0.011 6 0.075










TCA cycle variation VIII AraCyc 24 0.037 6 0.108



























page created by Vincent Sauveplane 04/28/06