| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP71B22 (At3g26200) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| there are co-expressed pathways only in the mutant data set | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP71B22 (At3g26200) | |||||||||||||||
| max. difference between log2-ratios: | 4.5 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 3.1 | |||||||||||||||
| Link to organ heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| Pathways co-expressed in the Stress data set ( with more than 10 annotation points) | CYP71B22 (At3g26200) | |||||||||||||||
| max. difference between log2-ratios: | 10.0 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.8 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points) | CYP71B22 (At3g26200) | |||||||||||||||
| max. difference between log2-ratios: | 4.0 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.9 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) | CYP71B22 (At3g26200) | |||||||||||||||
| max. difference between log2-ratios: | 6.1 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.4 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to mutants heatmap | ||||||||||
| Phenylpropanoid Metabolism | BioPath | 40 | 0.000 | 6 | 0.000 |
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| response to pathogenic bacteria | TAIR-GO | 34 | 0.000 | 5 | 0.000 | |||||||||||
| tryptophan biosynthesis | TAIR-GO | 34 | 0.000 | 5 | 0.000 | |||||||||||
| tryptophan biosynthesis | AraCyc | 34 | 0.000 | 5 | 0.000 | |||||||||||
| Shikimate pathway | LitPath | 34 | 0.000 | 5 | 0.000 | |||||||||||
| Trp biosyntesis | LitPath | 34 | 0.000 | 5 | 0.000 | |||||||||||
| Aromatic amino acid (Phe, Tyr, Trp) metabolism | BioPath | 28 | 0.000 | 4 | 0.000 | |||||||||||
| core phenylpropanoid metabolism | BioPath | 12 | 0.000 | 2 | 0.001 | |||||||||||
| Phenylalanine, tyrosine and tryptophan biosynthesis | KEGG | 12 | 0.000 | 2 | 0.000 | |||||||||||
| Phenylpropanoid pathway | LitPath | 12 | 0.020 | 2 | 0.154 | |||||||||||
| lignin biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.001 | |||||||||||
| lignin biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.002 | |||||||||||
| page created by Juergen Ehlting | 04/04/06 | |||||||||||||||