Co-Expression Analysis of: CYP71B28 (At1g13090) Institut de Biologie Moléculaire des Plantes











































































































































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Mutant Data Set save / view heatmap as: OpenOffice Table annotation details for co-expressed genes can be found to the right of the heatmap

























































































































































MS Excel Table

























































































































































save / view all data as: Tab delimited Table For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets.






















































































































































shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) magnitude of change  [log2(mutant / wild type)]  0   0.3   0.6   0.9  1.2   1.5   1.8   2.1   2.4   2.7   >3















































































































































greater than zero                                                         



















































































































































less than zero                                                         



















































































































































Locus r-value Name Description 35S leafy, seedling (143) aba1, fresh seeds (96) abi1, fresh seeds (96) abi3, fresh seeds (96) acn1, seedlings (63) acn1, seedlings, with sucrose (63) add3, seedling (55) ag12, shoot apex (89) ag12, flower (89) akt1, roots (141) anr1, roots, dex treated, N03 depleted (64) anr1, roots, not dex treated, N03 depleted (64) anr1, roots, nitrate depleted (135) ap1, shoot apex (89) ap1, flower (89) ap2, shoot apex (89) ap2, flower (89) ap3, shoot apex (89) ap3, flower (89) ape2, mature leaf, high light (68) ape3, mature leaf, low light (68) ARR22o, seedling (115) ARR22o, seedling, zeatin (115) ar4, whole plant (104) bountifullo, juvenile leaf (48) camta1, suspension cell (138) camta1, seedling (138) cdb1, seedling (137) cdpk-yfp1, seedling (65) cdpk-yfp4, seedling (65) chs, juvenile leaf (67) cir1-PR1-LUC, whole rosette (31) cir1-ein2-PR-LUC, whole rosette (31) cls8, seedling (76) cls8, seedling, 4°C (76) clv3, shoot apex (89) clv3, flower (89) cngc1, roots (141) cngc4, roots (141) co, apical region, vegetative (94) co, apical region, reproductive, 3d (94) co, apical region, reproductive, 5d (94) co, apical region, reproductive, 7d (94) coi1, senescing leaf (60) cov, stem, base (66) cov, stem, tip (66) det2, seedling, mock, 30min (111) det2, seedling, BL, 30min (111) det2, seedling, mock, 1h (111) det2, seedling, BL, 1h (111) det2, seedling, mock, 3h (111) det2, seedling, BL, 3h (111) det2, seedling (131) ein2, senescing leaf (60) ein2-PR1-LUC, whole rosette (31) etr1, whole plant, water (99) etr1, whole plant, GA4, 60 min (99) fls2, seedling, control (81) fls2, seedling, flg22 (81) ft, apical region, vegetative (94) ft, apical region, reproductive, 3d (94) ft, apical region, reproductive, 5d (94) ft, apical region, reproductive, 7d (94) fus, fresh seeds (96) ga1, seedling, mock, 30min (111) ga1, seedling, GA3, 30min (111) ga1, seedling, mock, 1h (111) ga1, seedling, GA3, 1h (111) ga1, seedling, mock, 3h (111) ga1, seedling, GA3, 3h (111) ga1, seedling (131) gl1, rosette leaf, stage 10 (88) gl1, rosette leaf, stage 12 (88) gpa1, seedling, ABA, 3h (75) gpa1, seedling (75) gun1-gun5, whole plant, Norflurazone (98) hic, guard cell enriched (11) hic, mature leaf (11) hic, guard cell enriched, CO2 (11) hic, mature leaf, CO2 (11) iae1, hypocotyl (139) iae2, hypocotyl (139) icl2 (Col), seedling (28) icl2 (Ws), seedling (28) ir1, roots (142) ku80, whole plant (57) ku80, whole plant, bleomycin, 3d (57) leafy-GR, seedling, de (143) leafy-GR, seedling, de/cyc (143) leafy-GR, seedling, cyc (143) lfy, shoot apex (89) lfy, flower (89) lfy, apical region, vegetative (94) lfy, apical region, reproductive, 3d (94) lfy, apical region, reproductive, 5d (94) lfy, apical region, reproductive, 7d (94) ms1-ttg, flower bud, old (9) ms1-ttg, flower bud, young (9) myb61, seedling (15) myb61, seedling, sucrose (15) MYB61o, seedling (15) MYB61o, seedling, sucrose (15) nahG, senescing leaf (60) o1, seedling (46) o1, seedling, H202, 3h (46) pasta2M1, mature leaf (150) pho1, mature leaf (61) pho3, leaf (27) pmr4, mature leaf, Erysiphe cichoracearum (85) pmr4, mature leaf (85) RALF1o, seedling (152) rbohB, seedling (59) rbohB, seedling, 30°C, 1h (59) rbohB, seedling, 40°C, 1h (59) rbohC, root, elongation zone (79) rdo, fresh seeds (96) rhd2, lateral roots (29) sfr2, whole rosette, 4°C (58) sfr2, whole rosette (58) sfr2-1, whole rosette, 4°C, 24h (12) sfr2-1, whole rosette, 4°C, 24h (12) sfr3, whole rosette, 4°C (58) sfr3, whole rosette (58) sfr6, whole rosette, 4°C (58) sfr6, whole rosette (58) sfr6, whole rosette, drought (58) sfr6, seedling (76) sfr6, seedling, 4°C (76) sfr6, suspension cell, light (153) sfr6, suspension cell, dark (153) sph1, leaves, stage 5 (145) sph1, leaves, stage 14 (145) tcp13, flowers (100) tcp14, flowers (100) ttg, flower bud, old (9) ttg, flower bud, young (9) ufo1, shoot apex (89) ufo1, flower (89) gun1-gun5, seedling, far red then white light (83) gun1-gun5, seedling, dark then white light (83) zorro, seedlings, control, 2h (103) zorro, seedlings, control 24h, (103) zorro, seedlings, zearalenone, 2h (103) zorro, seedlings, zearalenone, 24h (103) Locus Probeset Name Description Annotation score GO.keywords FunCat keywords AraCyc annotations KEGG annotations BioPath annotations AcylLipid category Literature annotations Gene family 90% quantile of DE max. DE
At1g13090 1.000 CYP71B28 cytochrome P450 family protein 0.01 -0.6 -0.35 -0.89 -0.07 0.02 0.02 -0.05 0.41 0.19 0.07 0.33 -0.05 -0.54 0.3 -0.38 -0.11 0.23 0.32 0.18 -0.32 1.28 -0.06 0.03 -0.5 -0.15 -0.47 0.12 -0.65 0.02 0.05 0.28 0.17 0.18 0.24 0.01 -0.22 0.03 0.2 0 0 0 0 0.66 -0.07 -0.11 -0.41 -0.31 -0.38 -0.64 -0.65 -0.45 -0.23 0.36 0.41 0.17 -0.04 0.1 0.48 0.09 0.18 -0.11 -0.05 -0.82 -0.01 -0.56 0.28 0.37 -0.42 -0.36 -0.87 0.41 0.57 0.15 0.37 0.31 0.07 -0.25 0.28 0.07 -0.36 -0.13 0.31 0.38 0.57 -0.34 0.34 -0.04 -2.33 -2.33 0.17 0.15 0.13 -0.12 0 -0.17 -0.14 -0.2 1.63 0.74 0.73 0.45 0.25 -0.17 0.21 0.02 -1 0.04 0.62 -0.14 -0.34 0.05 -0.15 -0.01 0.12 -0.28 0.53 0.21 0.83 0.86 0.71 -0.15 0.3 0.05 0.12 -1.67 0.43 -0.03 0 0.22 0.63 0.11 0.44 0.17 -0.57 -0.54 -0.05 0.35 -0.16 0.23 0.17 0.41 0.04 -0.12 At1g13090 262780_at CYP71B28 cytochrome P450 family protein 1






cytochrome P450 family 1.31 3.95
At4g37200 0.618 HCF164 Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin -0.03 -0.36 0.19 0.47 -0.07 -0.1 0.67 -0.09 0.16 0.22 -0.17 0.12 0.12 -0.1 -0.15 -0.07 -0.05 -0.03 0.31 -0.08 0.08 0.23 0 0.17 -0.54 0.17 -0.08 0.45 -0.28 -0.33 0.16 -0.22 0.35 -0.05 0.28 -0.21 0.09 0.13 0.03 0.02 0.02 0.02 0.02 0.33 -0.27 -0.21 -0.07 -0.1 -0.05 -0.02 0.02 -0.28 0.08 0.13 0.1 0 -0.05 0.09 0.26 0.66 0.43 0.42 0.34 0.17 -0.19 0.05 0.22 0.25 0.02 0.19 -0.36 -0.25 0.15 0 -0.1 0.56 -0.28 0.23 0.14 0.54 -0.1 -0.23 0.57 0.24 0.19 -0.64 -0.11 -0.11 -1.45 -1.67 0.32 0.21 0.41 0.07 0.47 0.24 0.02 0.04 0.48 0.08 0.32 -0.23 0.19 -0.23 0.12 0.08 -0.62 -0.49 -0.09 -0.17 -0.21 -0.06 -0.04 -0.14 0.09 -0.57 0.52 0.37 0.77 -0.04 0.07 0.13 0.04 0.08 0.11 -2.7 -0.2 -0.02 0.02 -0.36 -0.23 -0.52 0.27 0.13 -0.25 -0.03 -0.01 0.19 0.28 0.05 0.08 0 -0.2 -0.2 At4g37200 246226_at HCF164 Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin 10 oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor | cytochrome b6f complex assembly electron transport and membrane-associated energy conservation

Thylakoid biogenesis and photosystem assembly


1.00 3.47
At1g20560 0.604
AMP-dependent synthetase and ligase family protein 0.09 -0.01 0.27 0.18 -0.1 0.09 0.22 0.09 0.03 -0.21 -0.06 -0.02 0.1 -0.02 -0.07 0.01 -0.04 0.17 0.19 -0.15 -0.17 0.77 1.1 0.82 -0.65 -0.08 0.17 0.1 0.02 -0.28 0.27 -0.25 0.67 0.25 0.01 0.2 -0.36 0.09 -0.03 0.01 0.01 0.01 0.01 0.33 -0.14 -0.39 -0.1 0.07 -0.26 -0.13 0.13 -0.05 0.21 0.28 -0.1 0.03 -0.12 0.27 0.64 0.37 0.35 0.36 0 0.54 0.48 0.32 0.27 0.14 0.49 0.49 -0.15 -0.26 0.28 -0.06 0.3 0.18 0.18 -0.28 -0.7 -0.86 0.14 0.1 0.04 0.05 -0.31 0.18 -0.03 -0.56 -3.57 -2.76 -0.02 0.12 0.03 0.17 0.06 -0.28 -0.03 0.23 0.13 0.07 0.25 0.05 0.56 -0.23 0.6 -0.12 -0.46 0.11 -0.01 -0.02 -0.19 -0.07 0.06 0.08 0.18 -0.47 0.53 -0.04 1.12 -0.23 0.15 -0.16 0.12 0.08 -0.09 -2.65 0.21 0.02 0.01 0.46 -0.04 -0.38 0.09 0.09 -0.09 0 -0.03 0.07 -0.01 -0.39 0.14 -0.16 0.46 0.14 At1g20560 259545_at
AMP-dependent synthetase and ligase family protein 2

carnitine metabolism-- CoA-linked



Acyl activating enzymes , CoA ligases, clade VI 1.03 4.69
At2g14170 0.570 ALDH6B2 methylmalonate-semialdehyde dehydrogenase 0.18 -0.16 0.12 -0.57 -0.04 0.05 -0.49 0.03 0.05 0.13 0.07 -0.01 0.14 0.07 -0.16 0.13 0.1 0.18 0.07 0.14 -0.15 0.24 0.15 -0.4 -0.19 0.59 0.2 0.19 0.22 -0.11 0.2 -0.01 0.19 -0.02 0.52 0.05 -0.11 0.14 0.77 0.03 0.03 0.03 0.03 0.71 -0.49 -0.15 -0.04 0.34 0.04 0.13 -0.08 0.08 -0.09 0.75 0.11 0.07 -0.05 0.07 0.17 0.01 0.09 0.15 0.24 -0.5 0.28 0.37 0.24 0.28 0.46 0.4 -0.03 0.24 -0.48 -0.06 -0.15 -0.07 0.3 -0.33 -0.45 -0.22 0.08 -0.62 1.13 0.37 0.02 -0.32 -0.5 0.4 -2.42 -2.71 -0.04 -0.1 -0.14 0.03 -0.09 -0.03 0.01 -0.17 0.17 -0.5 0.39 -0.56 0.72 0.26 0.13 0.2 -1.13 0.11 0.17 0.23 0.76 0.06 0.01 0.34 -0.03 -0.31 0.01 0.09 0.13 0.01 -0.44 -0.02 0.01 -0.08 -0.44 -2.52 -0.11 0.39 0.03 -0.34 0.34 -0.18 0.65 0.14 -0.15 -0.2 0.13 -0.09 0.17 0.7 0.1 0.15 0.28 0.38 At2g14170 263275_at ALDH6B2 methylmalonate-semialdehyde dehydrogenase 6

arginine degradation IX | 4-hydroxyproline degradation | proline degradation I | proline degradation II Propanoate metabolism | Inositol metabolism | Valine, leucine and isoleucine degradation


Aldehyde dehydrogenase, Family 6: methylmalonate semialdehyde dehydrogenases (MMS-ALDH)) 1.14 3.85
At2g29590 0.555
thioesterase family protein -0.03 -0.35 -0.38 -1.37 -0.17 0.01 0.48 -0.25 -0.24 0.53 -0.47 0.16 0.19 0.18 -0.22 0.25 0.2 0.22 0.23 0.28 0.16 0.68 0.03 -0.1 -0.59 -0.04 0.08 -0.04 -0.36 0.28 0.11 0.01 0.01 0.01 0.8 0.02 -0.41 0.46 0.3 0.01 0.01 0.01 0.01 -0.12 -0.17 -0.1 -0.13 0.01 -0.27 -0.42 -0.18 -0.34 -0.19 0.6 0.01 0.06 -0.37 0.08 0.23 0.59 0.48 0.25 0.35 -0.92 0.53 0.41 0.62 0.37 0.41 -0.01 -0.77 0.19 0.17 -0.26 0.01 -0.2 -0.37 -0.87 0.01 0.11 -0.19 -0.49 0.28 0.33 0.21 0.17 -0.23 0.28 -0.88 -1.14 -0.15 -0.03 -0.06 0.06 -0.07 -0.09 0.25 0 -0.09 0.2 0.01 0.01 -0.68 0.01 0.9 0.28 -0.55 0.16 0.24 -0.13 0.01 0.01 0.01 0.97 -0.09 0.07 0.02 0.46 0.86 0.18 -0.03 0 -0.17 -0.02 -0.41 -3.38 0.47 0.01 0.01 -0.02 0.96 0.03 -0.43 -0.02 0.17 0.12 -0.03 -0.1 -0.54 -0.37 0.86 1.14 0.16 -0.03 At2g29590 266298_at
thioesterase family protein 2



Gluconeogenesis from lipids in seeds | fatty acid beta oxidation complex


1.34 4.54
At3g62790 0.545
contains weak similarity to NADH-ubiquinone oxidoreductase (Homo sapiens) -0.01 -0.05 -0.33 -0.35 -0.18 0.12 -0.25 -0.09 -0.38 0.33 0.17 0.39 0.38 -0.11 -0.45 0.12 -0.47 0.1 -0.38 -0.11 -0.05 0.32 -0.21 0.17 0.27 -0.31 0.24 0.09 0.23 0.15 -0.07 0.07 0.57 0.31 -0.4 0.21 -0.26 -0.08 -0.02 0.03 0.03 0.03 0.03 -0.3 -0.1 -0.31 -0.05 -0.15 -0.2 -0.17 -0.2 -0.12 0.34 0.34 0.1 0.13 0.16 0.11 0.24 0.68 0.8 0.39 0.48 -0.85 -0.21 0.08 0.12 0.06 0.16 0.17 0.16 0.21 0.3 -0.25 0.13 -0.23 0.34 -0.73 0.35 -0.04 0.02 -0.34 -0.49 -0.16 0.06 -0.66 -0.69 -0.3 -1.39 -1.79 -0.1 -0.35 -0.05 0.17 0.04 -0.11 0.19 0.42 0.14 1.38 0.06 1.12 0.14 0.79 -0.08 -0.12 0.66 -0.03 0.18 0.07 -0.28 -0.27 0.33 0.49 -0.06 -0.77 -0.11 0.06 0.51 0.8 0.91 0.03 0.27 0.18 0.33 -2.21 0.39 -0.08 0.03 0.31 0.13 -0.32 0.17 -0.18 -0.67 -0.56 0.04 -0.32 -0.1 -0.28 -0.06 0.46 0.08 0.15 At3g62790 251186_at
contains weak similarity to NADH-ubiquinone oxidoreductase (Homo sapiens) 2


Oxidative phosphorylation



1.32 3.59
At5g55290 0.541
ATP synthase subunit H family protein 0.16 -0.39 -0.23 -0.54 -0.11 0.07 -0.3 0.13 0.04 -0.08 0.05 0.18 0.02 0.08 0.01 0.15 -0.02 0.25 -0.1 0.05 0.14 0.11 -0.3 -0.3 0.61 0.12 -0.02 -0.08 0.1 -0.05 0.06 -0.17 0 -0.06 0.22 -0.07 -0.03 -0.16 -0.26 0.05 0.05 0.05 0.05 0.25 -0.11 0.03 -0.2 0.03 0.1 0.07 -0.15 -0.05 0.03 0.28 0.16 0.24 0.21 -0.08 0.19 0.16 -0.07 0.28 -0.17 -0.59 -0.09 0.26 0.14 -0.03 0 0.21 0.04 0.14 -0.02 0.12 0.16 -0.22 -0.19 0.16 0.01 -0.35 0.11 -0.06 0.13 -0.54 0.14 -0.06 -0.14 0.12 -1.59 -1.68 0.12 -0.09 -0.06 -0.08 0.34 -0.02 0.15 0.07 -0.18 0.6 -0.23 0.14 0.56 0.3 0.11 0.16 -0.42 0.22 0.17 0.12 0.06 -0.05 0.21 0.14 -0.03 -0.24 -0.09 0.26 0.49 -0.07 0.19 0.23 -0.03 0.23 0.1 -0.74 0.1 0.3 0.05 0.16 -0.15 0.02 -0.08 -0.06 -0.05 0.17 0.23 -0.01 0.02 -0.04 -0.08 0.16 -0.15 -0.08 At5g55290 248098_at
ATP synthase subunit H family protein 2


ATP synthesis



0.67 2.29
At5g64370 0.538
PYD3 encodes a beta-ureidopropionase which, when expressed in E. coli, has been shown to convert beta-ureidopropionate into beta-alanine. -0.01 -0.51 -0.22 -0.82 -0.1 0.02 -0.12 -0.1 0.21 0.07 -0.04 0.13 0.08 0.05 -0.25 0.07 -0.19 0.12 0.06 0.61 0.34 0.51 1.1 0.13 -0.71 0.27 0.1 0.02 0.05 0.25 -0.07 -0.28 0.04 -0.07 0.15 0.01 0.16 0.05 -0.12 -0.01 -0.01 -0.01 -0.01 0.03 -0.06 0.28 -0.17 -0.09 -0.2 -0.31 -0.26 -0.35 -0.16 0.15 0.06 0.08 0.15 -0.31 0.03 0 0.03 0.27 0.06 -0.69 -0.05 -0.15 -0.25 -0.3 -0.09 -0.18 0.02 0.7 0.21 -0.13 0 -0.05 -0.14 -0.41 -0.11 -0.33 -0.34 -0.32 0.28 0.08 0.17 0.11 0.05 0 -1.69 -1.75 -0.1 -0.37 -0.13 0.17 0.3 0.09 -0.06 -0.17 -0.08 0.06 -0.33 0.13 -0.03 -0.12 0 0.08 -0.24 0.4 0.26 0.12 0.1 -0.24 -0.04 0.31 0.03 -0.27 0.04 0.44 1.45 0.32 0.34 0.35 0.24 0.16 0.36 0.79 0.24 0.02 -0.01 0.12 0.77 -0.17 0.37 0.18 -0.18 -0.38 0.14 -0.14 -0.51 -0.19 0.1 0.28 -0.15 0.28 At5g64370 247275_at
PYD3 encodes a beta-ureidopropionase which, when expressed in E. coli, has been shown to convert beta-ureidopropionate into beta-alanine. 9 beta-ureidopropionase activity

Nucleotide Metabolism | Pyrimidine metabolism | beta-Alanine metabolism | Pantothenate and CoA biosynthesis



0.84 3.20
At1g72680 0.537
similar to cinnamyl-alcohol dehydrogenase from Medicago sativa and Picea abies 0.21 -0.19 -0.33 -2.34 -0.09 0.05 -0.14 -0.05 0.72 0.32 -0.04 0.23 0.03 -0.5 -0.31 -0.1 -0.24 -0.15 0.26 0.3 0.13 0.55 1.53 -0.08 -1 0.28 -0.25 0.03 0.18 0.66 -0.03 0.13 0.42 -0.02 0.19 -0.14 0.39 0.46 0.71 -0.01 -0.01 -0.01 -0.01 0 0.03 0.5 0.04 0.02 -0.06 -0.14 -0.01 -0.14 -0.1 0.27 0.06 -0.03 -0.05 -0.1 0.49 -1.01 -0.91 -1.07 -1.08 -2.18 -0.13 -0.02 -0.23 -0.28 -0.08 -0.07 -0.19 0.64 0.51 -0.43 -0.36 0.8 -0.65 0.11 -0.18 -0.45 -0.15 0.54 0.28 0.08 0.04 1.33 0.09 -0.03 -1.97 -2.06 -0.26 0.25 -0.1 -0.01 0.1 0.19 -0.22 -0.67 0.36 0.26 0.78 1.17 -0.64 -0.86 -0.39 0.4 -0.28 1.13 0.67 0.35 -0.24 -0.11 0.1 0.47 0.22 0.16 0.81 0.75 -0.62 0.32 0.39 0.7 0.36 0.21 -0.89 -1.33 0.42 0.96 -0.01 0.18 0.98 0.33 -0.18 -0.22 -0.87 -0.49 0.34 0.68 -1.29 -0.57 0.57 0.93 0.56 0.77 At1g72680 259911_at
similar to cinnamyl-alcohol dehydrogenase from Medicago sativa and Picea abies 10 lignin biosynthesis
lignin biosynthesis
Phenylpropanoid Metabolism | core phenylpropanoid metabolism
Phenylpropanoid pathway
1.87 3.87
At1g72710 0.532
similar to casein kinase I, delta isoform from Arabidopsis thaliana 0.18 -0.44 0 -0.19 0.23 -0.04 -0.19 0.12 0.42 -0.17 0.55 -0.16 0.13 0 0.25 -0.15 0.1 -0.04 0.38 0.28 0.35 -0.13 0.27 -0.03 -0.49 0.09 0.42 0.07 -0.05 -0.07 0.07 0.31 -0.44 -0.1 0.08 0.1 0.28 -0.06 0.4 0.01 0.01 0.01 0.01 0.3 -0.22 0.21 0.08 -0.03 0.27 0.03 0.09 0.19 0.16 0.06 0.33 -0.04 -0.13 0 0.22 -0.05 0.02 -0.33 -0.2 0.07 0.01 0.1 0.27 -0.07 -0.06 0.1 -0.22 0.06 0.17 -0.07 -0.14 0.3 0.22 -0.19 -0.7 -0.39 -0.13 -0.17 0.43 0.1 0.19 0.04 0.63 0.16 -1.65 -1.68 -0.01 0.4 0.01 0.02 0.08 0 -0.26 -0.43 0.39 -0.53 0.47 -0.2 0.23 -0.11 -0.3 -0.05 -0.85 0.05 -0.08 0.12 0.33 -0.06 -0.08 -0.06 0.06 -0.03 0.04 -0.04 0.28 -0.23 -0.08 0.12 0.06 0.08 -0.09 -0.95 0.01 -0.08 0.01 0 0.26 -0.34 -0.14 -0.14 0.1 -0.15 0.19 0.4 0.64 0.54 -0.3 -0.11 0.1 -0.06 At1g72710 259865_at
similar to casein kinase I, delta isoform from Arabidopsis thaliana 4


Circadian rhythm



0.86 2.32
At3g04000 0.525
short-chain dehydrogenase/reductase (SDR) family protein 0.17 -0.1 -1.45 -0.53 -0.23 0.04 0.71 0.02 1.52 -0.14 0.2 -0.32 -0.14 0.01 2.35 0.01 0.09 0.01 1.84 -0.14 -0.14 1.86 1.84 -0.65 -0.42 -0.17 -0.13 0 0.26 -0.1 -0.26 -0.14 -0.14 -0.36 0.14 0.01 3.35 -0.14 0.74 -0.14 -0.14 -0.14 -0.14 -0.28 -0.14 -0.46 0.33 0.73 0.98 -0.14 0.5 -0.14 -0.12 0.08 -0.14 -0.12 -0.33 -0.22 0.73 -0.13 0.04 -0.22 0.47 -3.02 -0.14 -0.34 -0.14 -0.14 -0.22 -0.83 -0.47 -0.72 -0.06 -0.39 -0.18 1.14 -1.82 0.73 -1.28 -1.82 -0.16 -0.11 0.26 0.48 -0.14 0.3 0.46 -0.52 -4.47 -3.16 -0.21 1.52 -0.75 0.04 0.08 -0.35 -0.37 -1.31 0.88 -0.02 0.95 0.23 0.79 -0.66 0.08 0.27 -0.15 0.39 -0.04 -0.57 -0.97 -0.49 -0.44 -0.26 -0.14 0.36 -0.14 1.19 1.22 0.61 1 0.64 0.09 0.48 -1.03 -1.61 0.08 0.84 -0.14 -0.69 -0.15 -0.21 0.02 0.66 -1.86 -1.71 0.01 1.76 -0.87 -0.45 1.57 2.91 1.76 1.51 At3g04000 258815_at
short-chain dehydrogenase/reductase (SDR) family protein 2


Fatty acid biosynthesis (path 1)



3.31 7.82
At3g26900 0.522
similar to shikimate kinase (Lycopersicon esculentum) -0.07 -0.42 -0.22 0.41 -0.06 -0.12 0.22 0.31 0.43 0.55 -0.16 -0.12 0.16 -0.1 0.13 0.11 -0.1 0.12 0.33 0.09 0.01 -0.62 -0.54 -0.11 -0.14 0.21 0.04 0.11 0.06 0.03 0.07 0.04 -0.19 0.13 -0.1 0.25 0.26 0.34 0.78 0.02 0.02 0.02 0.02 0.1 -0.31 -0.23 0.06 0.16 0.12 0.2 -0.13 0.12 0.54 -0.28 0.34 -0.1 -0.06 -0.01 0.35 0.34 0.03 -0.09 0.14 0.56 -0.65 -0.81 -0.36 -0.55 -0.6 -0.5 0.03 0.15 -0.02 0.26 0.03 0.43 0.17 0.31 -0.13 -0.35 -0.13 -0.01 0.37 0.18 0.27 -0.22 -0.13 -0.08 -2.12 -2.36 0.44 0.35 0.17 -0.08 -0.18 0.11 -0.15 -0.31 0.26 -0.04 0.64 0.03 -0.57 0.12 -0.09 -0.04 -1.01 -0.25 -0.14 0.02 -0.27 0 0.05 0.07 0.43 -0.64 0.65 0.1 0.74 0.63 0.84 -0.03 -0.08 0.05 -0.09 0.05 0.2 0.04 0.02 0.1 -0.27 -0.22 0.32 0.06 -0.21 -0.23 0.18 0.54 0.57 0.59 -0.35 -0.09 -0.08 -0.23 At3g26900 258281_at
similar to shikimate kinase (Lycopersicon esculentum) 4 aromatic amino acid family biosynthesis, shikimate pathway
chorismate biosynthesis
Phenylpropanoid Metabolism | Aromatic amino acid (Phe, Tyr, Trp) metabolism
Shikimate pathway | chorismate biosynthesis
1.17 3.20
At5g16450 0.522
dimethylmenaquinone methyltransferase family protein, similar to bacterial S-adenosylmethionine:2-demethylmenaquinone methyltransferases 0.4 -0.15 -0.35 -0.59 -0.22 0.2 -0.51 -0.19 0.52 0.21 -0.08 0.31 0.21 -0.26 0.07 0.03 -0.15 0.12 0.4 -0.13 0 1.12 1.04 0.49 0.04 -0.09 0.06 0.07 0.68 0.56 -0.15 0.41 0.01 0.16 -0.03 0.39 1.01 0.01 -0.1 -0.01 -0.01 -0.01 -0.01 0.04 0.2 0.08 -0.45 -0.17 -0.28 -0.43 -0.49 -0.39 0.21 0.68 0.91 0.02 -0.1 0.01 0.21 0.31 0.32 0.19 0.52 -0.66 -0.32 -0.24 -0.37 -0.62 -0.34 -0.53 -0.65 0.54 0.26 -0.15 -0.06 -0.23 -0.43 0.84 -0.35 -0.85 0.03 0.35 -0.09 -0.43 0.12 0.52 -0.45 -0.41 -3.09 -3.43 -0.28 -0.61 -0.1 0.38 0.12 -0.05 0.16 -0.3 -0.57 0.25 -0.56 -0.17 0.81 -0.14 0.56 0.22 -0.27 0.82 0 0.06 0.47 -0.43 -0.33 -0.42 0.17 -0.47 0.51 0.64 0.83 -0.15 -0.11 0.26 0.12 0.02 0.09 -0.16 0.59 0.07 -0.01 0.54 0.02 -0.25 0.36 0.5 0.43 -0.02 0.3 0.65 -1.49 -0.51 0.23 0.94 0.5 0 At5g16450 250129_at
dimethylmenaquinone methyltransferase family protein, similar to bacterial S-adenosylmethionine:2-demethylmenaquinone methyltransferases 2





plastochinone and phylloquinone biosynthesis | phylloquinone biosynthesis
1.42 4.57
At1g59700 0.521 ATGSTU16 Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). -0.43 -1.1 -0.43 -0.16 0 0.07 0.42 0.5 1.12 0.24 0.07 -0.12 0.14 0.11 0.42 -0.52 -0.08 -0.56 0.27 0.25 0.06 1.44 1.56 0.13 -0.65 0.19 -0.1 0.18 -0.19 0 0.93 -0.14 0.1 -0.1 0.5 0.31 0.89 0.15 1.3 0.14 0.14 0.14 0.14 -0.02 -0.64 0.65 -1.36 -1.11 -1.23 -1.05 -0.52 -0.82 0.45 0.35 -0.26 -0.01 -0.07 0.34 1.11 -0.32 -0.17 0.28 -0.39 -1.15 -1.17 -1.8 -1.84 -1.69 -1.58 -1.57 0.15 0.06 0.68 0.2 0.2 0.66 0.06 -0.44 0.01 0.08 0.01 1.19 0.62 0.45 0.17 0.6 -0.21 -0.41 -2.27 -2.06 0.89 0.81 0.24 0.47 0.37 0.35 0.07 -1.14 0.65 0.3 0.36 0.17 0.34 0.21 0.63 0.47 -0.36 0.01 0.24 0.11 -0.8 0.08 0.2 0.12 0.14 -0.46 0.14 0.43 -0.23 0.2 0.25 0.3 0.22 0.28 -0.04 -0.34 -0.27 0.69 0.14 -0.17 -0.41 -0.09 0.3 0.54 -0.28 -0.3 0.46 0.99 0.39 -0.02 0.2 0.46 0.38 -0.12 At1g59700 262916_at ATGSTU16 Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). 2 toxin catabolism





Glutathione S-transferase, Tau family 2.26 3.82
At3g60240 0.520 EIF4G protein synthesisinitiation factor 4G (EIF4G). A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication. 0 0.41 0.39 -0.88 0.24 -0.05 -0.04 0.05 -0.01 0.09 -0.04 -0.06 0.01 -0.04 0.42 0 0.18 0.08 0.15 0.13 0.22 0.17 -0.15 0.37 -0.56 -0.22 -0.14 0.19 -0.17 -0.07 0 -0.01 -0.03 0.08 -0.03 0.09 0.07 0.21 0.24 0.02 0.02 0.02 0.02 0.63 0.21 -0.16 0.13 0.56 0.1 0.52 0.44 0.39 -0.61 -0.05 0.02 0.1 -0.1 0.16 0.1 0.24 0.25 0.52 0.03 -0.67 -0.21 -0.21 -0.38 -0.41 0.04 -0.13 -0.71 0 0.55 -0.28 0.02 -0.01 0.06 -0.66 0.27 -0.15 -0.15 -0.43 -0.02 0.41 -0.05 -0.45 0.81 -0.14 -1.36 -1.23 -0.1 0.14 0.02 0.06 0.2 -0.05 0.14 -0.04 0.2 -0.18 0.38 0.2 0.16 0.2 0.04 -0.06 0.37 0.15 0.31 0.04 -0.15 0.22 0.09 -0.11 0.16 0.51 0.31 -0.17 -0.31 0.14 0.18 -0.12 0.15 0.01 -0.01 -3.61 0.14 0.1 0.02 0.05 0.32 0.31 0.09 0.22 -0.18 -0.3 0.1 0.2 0.36 0.12 -0.11 -0.55 0.13 0.15 At3g60240 251431_at EIF4G protein synthesisinitiation factor 4G (EIF4G). A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication. 6 response to virus

Translation factors



1.04 4.42
At3g14150 0.506
(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative 0.26 -0.26 -0.57 -2.61 -0.54 0.09 0.31 -0.73 0.28 0.4 -0.19 -0.16 0.35 -0.84 0.28 -0.21 0.48 -0.27 0.73 0.71 0.07 0.85 -0.24 0.05 -0.48 0.46 -0.01 0.13 -0.15 -0.14 0.11 0.19 0.17 1.12 -0.16 -0.16 -0.1 -0.08 0.64 -0.07 -0.07 -0.07 -0.07 0.33 0.48 0.18 -0.31 -0.43 -0.26 -0.48 -0.63 -0.43 0.42 0.23 0.36 -0.45 -0.57 0.6 0.47 0.05 0.34 0.16 0.33 -2.12 -0.4 -0.17 0.02 0.13 -0.25 -1.21 0.19 0.01 -0.02 -0.52 0.47 0.05 0.42 -0.13 0.32 -0.46 0 -0.07 0.16 -0.27 0.02 -0.16 -0.34 0 0.12 -0.62 -0.62 0.67 0.06 0.15 -0.05 0.07 -0.25 -0.41 0.64 0.9 0.36 0.18 -0.17 0.59 1.09 -0.14 -0.64 0.45 0.21 -0.21 -0.1 -1.55 0.67 0.04 0.19 -0.14 0.59 0.21 1.49 0.5 0.69 -0.33 -0.09 -0.11 -0.07 -0.56 0.82 0.21 -0.07 0.09 0.06 -0.14 0.67 0.3 -1.01 -1.12 -0.07 0.42 -0.69 -0.07 -0.59 1.29 0.93 -0.41 At3g14150 257004_s_at
(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative 4

Iglutamate biosynthesis I | de novo biosynthesis of purine nucleotides I | de novo biosynthesis of purine nucleotides II | de novo biosynthesis of pyrimidine ribonucleotides | ureide biosynthesis | glutamine degradation III | ammonia assimilation cycle | photorespiration
Intermediary Carbon Metabolism


1.53 4.11
At4g29120 0.502
6-phosphogluconate dehydrogenase NAD-binding domain-containing protein, similar 2-hydroxy-3-oxopropionate reductase (Escherichia coli) 0.07 0.04 0.22 -0.15 0.03 0 0.2 -0.16 0.08 -0.16 0.13 0.18 -0.14 -0.14 -0.26 0 -0.01 0.03 0.08 -0.2 -0.28 0.55 -0.12 -0.23 -0.14 0.09 0.01 0.19 0.16 0.12 0.11 0.08 0.01 0.13 0.08 -0.1 -0.28 -0.05 0.03 0.02 0.02 0.02 0.02 0 -0.07 0.08 0.06 -0.09 -0.04 -0.16 0.04 -0.07 0.05 -0.25 0.3 0.01 -0.05 0.1 0.5 0.19 0.3 0.07 0.12 -0.42 0.04 0.11 0.22 0.27 0.18 0.09 0.35 0 0.14 -0.36 0.26 -0.04 -0.23 0.07 0.46 -0.07 -0.28 -0.12 0.13 -0.18 -0.06 -0.51 -0.08 -0.01 -1.41 -1.36 -0.05 -0.02 0.07 -0.17 -0.04 -0.12 0.09 0.28 -0.02 0.44 -0.07 0.11 -0.11 -0.13 0.04 -0.14 -0.48 -0.14 -0.18 0.06 0.35 0.01 -0.16 -0.02 0.07 0.08 0.22 0.25 -0.12 0.28 0.33 0.1 0.12 0.07 0.06 0.34 -0.05 -0.19 0.02 -0.11 -0.03 -0.1 0.19 -0.09 0.03 0.12 -0.04 -0.06 0.37 0.11 -0.18 0.31 -0.15 -0.09 At4g29120 253706_at (m)
6-phosphogluconate dehydrogenase NAD-binding domain-containing protein, similar 2-hydroxy-3-oxopropionate reductase (Escherichia coli) 2

proline biosynthesis I | arginine degradation VIII | oxidative branch of the pentose phosphate pathway | superpathway of gluconate degradation Valine, leucine and isoleucine degradation



0.62 1.96
At2g05840 0.501 PAA2 20S proteasome alpha subunit A2 (PAA2) -0.03 0.3 -0.06 -0.69 -0.19 -0.06 -0.04 -0.33 -0.39 0.04 0.07 0.12 0.28 -0.12 -0.44 -0.1 -0.22 -0.17 -0.26 -0.11 -0.09 0.31 0.28 0.4 -0.06 -0.15 -0.01 0.02 0.24 0.23 0.13 -0.06 -0.07 0.23 -0.16 0.17 -0.03 -0.01 -0.03 0.05 0.05 0.05 0.05 0.04 0.28 0.24 0.25 -0.14 0.03 -0.26 0.28 -0.02 -0.13 0.33 0.18 -0.09 -0.04 -0.09 0 -0.1 0.38 -0.25 0.12 -0.7 -0.42 -0.43 0.03 0.17 -0.07 -0.38 -0.44 0.03 0 -0.15 0.23 -0.17 0.1 0.05 -0.21 -0.15 0.15 0.3 -0.24 -0.46 -0.11 0.23 -0.14 -0.1 -1.12 -1.14 -0.17 -0.16 -0.07 0.19 -0.04 -0.05 0.11 0.09 1.04 0.56 0.64 0.73 0.3 -0.19 0.08 0.04 0.44 0.28 0.17 0.21 -0.02 0.03 -0.17 0.22 0.09 -0.06 0.16 -0.08 -0.3 0.49 0.63 0.18 0.14 -0.09 0.14 0.09 0.18 -0.11 0.05 0.11 0.18 0.04 -0.18 -0.06 -0.07 -0.18 -0.1 -0.28 -0.19 -0.35 0.01 0.15 0 0.2 At2g05840 266036_s_at PAA2 20S proteasome alpha subunit A2 (PAA2) 6 proteasome core complex (sensu Eukaryota) | ubiquitin-dependent protein catabolism

Folding, Sorting and Degradation | Proteasome



0.83 2.19



































































































































































page created by Vincent Sauveplane 05/19/06