Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71B29 (At1g13100) save all data as Tab Delimited Table










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Pathways co-expressed in the 2 applicable data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






Phenylpropanoid Metabolism BioPath 52 11






Glucosyltransferases for benzoic acids BioPath 40 4






pectin metabolism BioPath 33 12








Biosynthesis of steroids KEGG 33 6
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.







Biosynthesis of prenyl diphosphates BioPath 26 5








Terpenoid biosynthesis KEGG 26 5








prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 26 5
For more information on how these pathway maps were generated please read the methods page







C-compound and carbohydrate utilization FunCat 21 3












































































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP71B29 (At1g13100)







max. difference between log2-ratios: 2.5











max. difference between log2-ratios excluding lowest and highest 5%: 0.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Cell Wall Carbohydrate Metabolism BioPath 55 0.000 12 0.032


Phenylpropanoid Metabolism BioPath 40 0.000 9 0.004

Glucosyltransferases for benzoic acids BioPath 30 0.000 3 0.000

Methane metabolism KEGG 30 0.000 15 0.000

Phenylalanine metabolism KEGG 30 0.000 15 0.000

Prostaglandin and leukotriene metabolism KEGG 30 0.000 15 0.000

Stilbene, coumarine and lignin biosynthesis KEGG 30 0.000 15 0.000

Fructose and mannose metabolism KEGG 26 0.000 3 0.019

pectin metabolism BioPath 25 0.000 8 0.005

Biosynthesis of steroids KEGG 25 0.000 4 0.003

cellulose biosynthesis BioPath 20 0.000 3 0.018

Glycan Biosynthesis and Metabolism KEGG 20 0.000 3 0.051

Biosynthesis of prenyl diphosphates BioPath 18 0.000 3 0.016

Terpenoid biosynthesis KEGG 18 0.000 3 0.001










prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 18 0.000 3 0.000










triterpene, sterol, and brassinosteroid metabolism LitPath 17 0.000 5 0.007










hemicellulose biosynthesis BioPath 16 0.000 2 0.005










flavonol biosynthesis AraCyc 16 0.000 4 0.000










secondary metabolism FunCat 16 0.000 4 0.001










Glycerolipid metabolism KEGG 16 0.000 2 0.036










Lipid signaling AcylLipid 16 0.000 5 0.052










Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 14 0.022 2 0.169










colanic acid building blocks biosynthesis AraCyc 12 0.000 2 0.024










dTDP-rhamnose biosynthesis AraCyc 12 0.000 2 0.012










galactose degradation I AraCyc 12 0.000 2 0.000










glucose conversion AraCyc 12 0.000 2 0.010










lactose degradation IV AraCyc 12 0.000 2 0.000










trans-zeatin biosynthesis AraCyc 12 0.000 2 0.000










UDP-glucose conversion AraCyc 12 0.000 2 0.009










detoxification FunCat 12 0.000 6 0.000










C-compound and carbohydrate utilization FunCat 11 0.000 2 0.000












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP71B29 (At1g13100)







max. difference between log2-ratios: 2.9











max. difference between log2-ratios excluding lowest and highest 5%: 1.4

















Link to stress heatmap






There are no pathways co-expressed with r-value greater than 0.5 in this data set













































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP71B29 (At1g13100)







max. difference between log2-ratios: 2.1











max. difference between log2-ratios excluding lowest and highest 5%: 1.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






C-compound and carbohydrate metabolism FunCat 16 0.001 5 0.031





Phenylpropanoid Metabolism BioPath 12 0.008 2 0.218




glycolysis and gluconeogenesis FunCat 12 0.000 3 0.022




Transcription KEGG 11 0.000 4 0.001




Cytochrome b6/f complex BioPath 10 0.000 1 0.003




Glucosyltransferases for benzoic acids BioPath 10 0.000 1 0.006




Photosystems BioPath 10 0.004 1 0.264




electron transport TAIR-GO 10 0.000 1 0.001




acetate fermentation AraCyc 10 0.000 2 0.021




C-compound and carbohydrate utilization FunCat 10 0.000 1 0.000




RNA polymerase KEGG 9 0.000 3 0.001




Biosynthesis of prenyl diphosphates BioPath 8 0.000 2 0.008




pectin metabolism BioPath 8 0.002 4 0.011




Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 8 0.021 2 0.041










triacylglycerol degradation AraCyc 8 0.000 4 0.000










Biosynthesis of steroids KEGG 8 0.001 2 0.010










Terpenoid biosynthesis KEGG 8 0.000 2 0.001










prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 8 0.000 2 0.001





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP71B29 (At1g13100)







max. difference between log2-ratios: 3.5











max. difference between log2-ratios excluding lowest and highest 5%: 0.6

















Link to mutants heatmap






There are no pathways co-expressed with more than 6 annotation points























page created by Vincent Sauveplane 06/26/06