Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71B38 / CYP71B5 (At3g44250 / At3g53280 ) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are no co-expressed pathways common to all data sets



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP71B38 / CYP71B5 (At3g44250 / At3g53280 )







max. difference between log2-ratios: 5.6











max. difference between log2-ratios excluding lowest and highest 5%: 0.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 30 0.000 3 0.001


terpenoid metabolism LitPath 30 0.000 3 0.002

Phenylpropanoid Metabolism BioPath 20 0.000 4 0.001

monoterpene biosynthesis LitPath 20 0.000 2 0.000

core phenylpropanoid metabolism BioPath 14 0.000 3 0.000

monoterpenoid biosynthesis TAIR-GO 10 0.000 1 0.000

monoterpene biosynthesis AraCyc 10 0.000 1 0.000










plant monoterpene biosynthesis AraCyc 10 0.000 1 0.000












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP71B38 / CYP71B5 (At3g44250 / At3g53280 )







max. difference between log2-ratios: 1.2











max. difference between log2-ratios excluding lowest and highest 5%: 0.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






nucleotide metabolism FunCat 16 0.000 4 0.000
(deoxy)ribose phosphate degradation AraCyc 14 0.000 3 0.000
pyrimidine nucleotide metabolism FunCat 14 0.000 3 0.000
Nucleotide Metabolism KEGG 14 0.000 3 0.001
Pyrimidine metabolism KEGG 14 0.000 3 0.000
secondary metabolism FunCat 11 0.000 2 0.013
Cell Wall Carbohydrate Metabolism BioPath 10 0.000 4 0.023
gibberellic acid biosynthesis TAIR-GO 10 0.000 1 0.000










gibberellin biosynthesis AraCyc 10 0.000 1 0.000










plant / fungal specific systemic sensing and response FunCat 10 0.000 1 0.010










plant hormonal regulation FunCat 10 0.000 1 0.010










Diterpenoid biosynthesis KEGG 10 0.000 1 0.003










Gibberellin metabolism LitPath 10 0.000 1 0.028










giberelin biosynthesis LitPath 10 0.000 1 0.017










Intermediary Carbon Metabolism BioPath 8 0.000 2 0.046










iron-sulfur cluster assembly TAIR-GO 7 0.000 1 0.000










Nitrogen metabolism KEGG 7 0.000 1 0.017










Carotenoid and abscisic acid metabolism LitPath 7 0.000 2 0.004












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP71B38 / CYP71B5 (At3g44250 / At3g53280 )







max. difference between log2-ratios: 1.9











max. difference between log2-ratios excluding lowest and highest 5%: 0.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 54 0.000 6 0.000





terpenoid metabolism LitPath 54 0.000 6 0.000




Miscellaneous acyl lipid metabolism AcylLipid 44 0.000 16 0.000




Starch and sucrose metabolism KEGG 42 0.000 6 0.000




sexual reproduction TAIR-GO 20 0.000 5 0.000




monoterpene biosynthesis LitPath 20 0.000 2 0.000




sucrose metabolism BioPath 16 0.000 2 0.004




Galactose metabolism KEGG 16 0.000 2 0.003




biogenesis of cell wall FunCat 14 0.000 6 0.000




C-compound and carbohydrate utilization FunCat 14 0.000 2 0.000




jasmonic acid biosynthesis TAIR-GO 10 0.000 1 0.017




jasmonic acid mediated signaling pathway TAIR-GO 10 0.000 1 0.000




jasmonic acid metabolism TAIR-GO 10 0.000 1 0.000




monoterpenoid biosynthesis TAIR-GO 10 0.000 1 0.001










N-terminal protein myristoylation TAIR-GO 10 0.000 1 0.006










pentacyclic triterpenoid biosynthesis TAIR-GO 10 0.000 1 0.003










response to wounding TAIR-GO 10 0.000 1 0.022










jasmonic acid biosynthesis AraCyc 10 0.000 1 0.001










monoterpene biosynthesis AraCyc 10 0.000 1 0.000










plant monoterpene biosynthesis AraCyc 10 0.000 1 0.000










C-compound, carbohydrate catabolism FunCat 10 0.000 3 0.002










Biosynthesis of steroids KEGG 10 0.000 1 0.067










sequiterpene biosynthesis LitPath 10 0.000 1 0.001










triterpene biosynthesis LitPath 10 0.000 1 0.032










cellulose biosynthesis AraCyc 8 0.000 2 0.000










lactose degradation IV AraCyc 8 0.000 2 0.000










Oxidative phosphorylation KEGG 8 0.000 2 0.029










Pentose and glucuronate interconversions KEGG 8 0.000 2 0.000





























































Pathways co-expressed in the Mutant data set (with more than 30 annotation points)
CYP71B38 / CYP71B5 (At3g44250 / At3g53280 )







max. difference between log2-ratios: 4.4











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 69 0.000 9 0.028



protein synthesis FunCat 66 0.001 15 0.010


Folding, Sorting and Degradation KEGG 60 0.000 9 0.155


Oxidative phosphorylation KEGG 50 0.000 12 0.001


Gluconeogenesis from lipids in seeds BioPath 49 0.000 9 0.007


Carbon fixation KEGG 46 0.000 9 0.008


Citrate cycle (TCA cycle) KEGG 46 0.000 7 0.004


transport facilitation FunCat 44 0.000 8 0.000


Glycolysis / Gluconeogenesis KEGG 43 0.008 8 0.060


Pyruvate metabolism KEGG 43 0.008 6 0.185


Protein folding / chaperonins (chloroplast) BioPath 40 0.000 5 0.000


leucine biosynthesis AraCyc 40 0.000 7 0.000


development TAIR-GO 39 0.000 5 0.058










Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 38 0.040 5 0.184










biogenesis of chloroplast FunCat 38 0.023 5 0.236










Translation factors KEGG 38 0.002 9 0.050










sterol biosynthesis BioPath 36 0.000 4 0.018










TCA cycle -- aerobic respiration AraCyc 36 0.000 6 0.020










TCA cycle variation VII AraCyc 36 0.001 6 0.121










TCA cycle variation VIII AraCyc 36 0.000 6 0.025










Glutamate metabolism KEGG 36 0.001 5 0.057










Proteasome KEGG 33 0.001 5 0.119










triterpene, sterol, and brassinosteroid metabolism LitPath 33 0.033 5 0.242










serine-isocitrate lyase pathway AraCyc 32 0.000 5 0.049










Reductive carboxylate cycle (CO2 fixation) KEGG 32 0.000 5 0.001



























page created by Juergen Ehlting 07/06/06