Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP72A8(At3g14620)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
Glutathione metabolism	KEGG	125	17
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 20 annotation points)						CYP72A8(At3g14620)
max. difference between log2-ratios:				7.9
max. difference between log2-ratios excluding lowest and highest 5%:				5.4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Phenylpropanoid Metabolism	BioPath	44	0.010	6	0.239
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)	BioPath	40	0.000	6	0.010
transport	FunCat	40	0.000	5	0.000
Lipid signaling	AcylLipid	38	0.000	8	0.017
photorespiration	AraCyc	32	0.000	6	0.000
Miscellaneous acyl lipid metabolism	AcylLipid	32	0.000	6	0.183
Carotenoid and abscisic acid metabolism	LitPath	32	0.000	4	0.000
Glucosyltransferases for benzoic acids	BioPath	30	0.000	3	0.000
biogenesis of chloroplast	FunCat	30	0.000	4	0.025
transport facilitation	FunCat	30	0.000	4	0.000
Ion channels	KEGG	30	0.000	7	0.000
Ligand-Receptor Interaction	KEGG	30	0.000	7	0.000
Chloroplastic protein turnover	BioPath	28	0.000	4	0.000
hypersensitive response	TAIR-GO	28	0.000	3	0.000
photorespiration	TAIR-GO	28	0.000	4	0.000
Carotenoid biosynthesis	BioPath	26	0.000	3	0.000
carotenoid biosynthesis	AraCyc	26	0.000	3	0.000
energy	FunCat	26	0.000	4	0.000
carotenid biosynthesis	LitPath	26	0.000	3	0.000
Carbon fixation	KEGG	25	0.000	3	0.022
additional photosystem II components	BioPath	24	0.000	3	0.026
jasmonic acid biosynthesis	TAIR-GO	24	0.000	4	0.000
jasmonic acid biosynthesis	AraCyc	24	0.000	4	0.000
photosynthesis	FunCat	24	0.000	4	0.007
Biosynthesis of steroids	KEGG	24	0.000	3	0.007
ATP-dependent proteolysis	TAIR-GO	22	0.000	4	0.000
calmodulin binding	TAIR-GO	22	0.000	4	0.000
glycine biosynthesis I	AraCyc	22	0.000	4	0.005
superpathway of serine and glycine biosynthesis II	AraCyc	22	0.000	4	0.000
degradation	FunCat	21	0.000	3	0.005
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP72A8(At3g14620)
max. difference between log2-ratios:				8.4
max. difference between log2-ratios excluding lowest and highest 5%:				3.6
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
Cell Wall Carbohydrate Metabolism	BioPath	10	0.001	1	0.122
cellulose biosynthesis	BioPath	10	0.000	1	0.003
hemicellulose biosynthesis	BioPath	10	0.000	1	0.000
Glutathione metabolism	KEGG	9	0.000	1	0.002
Pathways co-expressed in the Hormone etc. data set (with more than 20 annotation points)						CYP72A8(At3g14620)
max. difference between log2-ratios:				4.8
max. difference between log2-ratios excluding lowest and highest 5%:				2.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Phenylpropanoid Metabolism	BioPath	105	0.000	14	0.000
Biosynthesis of Amino Acids and Derivatives	BioPath	60	0.000	7	0.024
Glutathione metabolism	BioPath	60	0.000	7	0.000
tryptophan biosynthesis	TAIR-GO	58	0.000	8	0.000
tryptophan biosynthesis	AraCyc	58	0.000	8	0.000
Shikimate pathway	LitPath	58	0.000	8	0.000
Trp biosyntesis	LitPath	58	0.000	8	0.000
Aromatic amino acid (Phe, Tyr, Trp) metabolism	BioPath	54	0.000	8	0.000
response to pathogenic bacteria	TAIR-GO	54	0.000	8	0.000
sulfate assimilation III	AraCyc	44	0.000	6	0.000
Phenylalanine, tyrosine and tryptophan biosynthesis	KEGG	36	0.000	6	0.000
cysteine biosynthesis I	AraCyc	35	0.000	5	0.000
Glucosyltransferases for benzoic acids	BioPath	30	0.000	3	0.000
Intermediary Carbon Metabolism	BioPath	30	0.042	6	0.049
toxin catabolism	TAIR-GO	26	0.000	9	0.000
nitrogen and sulfur metabolism	FunCat	26	0.000	3	0.000
Gluconeogenesis from lipids in seeds	BioPath	24	0.000	3	0.056
lipid, fatty acid and isoprenoid degradation	FunCat	22	0.000	3	0.000
Glutathione metabolism	KEGG	22	0.000	4	0.000
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP72A8(At3g14620)
max. difference between log2-ratios:				5.6
max. difference between log2-ratios excluding lowest and highest 5%:				3.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Miscellaneous acyl lipid metabolism	AcylLipid	18	0.000	3	0.000
Biosynthesis of Amino Acids and Derivatives	BioPath	12	0.000	2	0.001
Glutathione metabolism	BioPath	12	0.000	2	0.000
toxin catabolism	TAIR-GO	12	0.000	2	0.000
Glutathione metabolism	KEGG	12	0.000	2	0.000
biosynthesis of phenylpropanoids	FunCat	10	0.000	1	0.001
biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine	FunCat	10	0.000	1	0.001
page created by Juergen Ehlting	07/05/06