| Co-Expression Analysis of: | CYP72C1, SHK1, SOB7 (At1g17060) | Institut de Biologie Moléculaire des Plantes |
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| ________________________ | _____________________________________________ | CYPedia Home | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Hormones etc. Data Set | save / view heatmap as: | OpenOffice Table | annotation details for co-expressed genes can be found to the right of the heatmap | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MS Excel Table | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| save / view all data as: | Tab delimited Table | For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) | magnitude of change [log2(treatment/control)] | 0 | 0.3 | 0.6 | 0.9 | 1.2 | 1.5 | 1.8 | 2.1 | 2.4 | 2.7 | >2.99 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| greater than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| less than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Locus | r-value | Name | Description | ethylene, 3h, petiole (13) | mock, 30min, seedling (110) | IAA, 30min, seedling (110) | IAA, 1h, seedling (110) | IAA, 3h, seedling (110) | zeatin, 30min, seedling (110) | zeatin, 1h, seedling (110) | zeatin, 3h, seedling (110) | GA3, 30min, seedling (110) | GA3, 1h, seedling (110) | GA3, 3h, seedling (110) | ABA, 30min, seedling (110) | ABA, 1h, seedling (110) | ABA, 3h, seedling (110) | MJ, 30min, seedling (110) | MJ, 1h, seedling (110) | MJ, 3h, seedling (110) | ACC, 30min, seedling (110) | ACC, 1h, seedling (110) | ACC, 3h, seedling (110) | BL, 30min, seedling (110) | BL, 1h, seedling (110) | BL, 3h, seedling (110) | ABA, 3 uM, imbided seed (116) | ABA, 30 uM, imbided seed (116) | GA, 3h, imbibed seed (119) | GA, 6h, imbibed seed (119) | GA, 9h, imbibed seed (119) | GA, 3h, imbibed seed (134) | GA, 6h, imbibed seed (134) | GA, 9h, imbibed seed (134) | GA, 30min, whole plant (99) | GA, 60min, whole plant (99) | GA, 3h, whole plant (99) | IAA, 0.1uM, 1h, seedling (144) | IAA, 0.1uM, 3h, seedling (144) | IAA, 1uM, 1h, seedling (144) | IAA, 1uM, 3h, seedling (144) | ppi, 3h, seedling (113) | ppi, 12h, seedling (113) | uni, 3h, seedling (113) | uni, 12h, seedling (113) | brz220, 3h, seedling (113) | brz220, 12h, seedling (113) | brz91, 3h, seedling (113) | brz91, 12h, seedling (113) | pac, 3h, seedling (113) | pac, 12h, seedling (113) | px, 3h, seedling (113) | px, 12h, seedling (113) | pno8, 3h, seedling (113) | pno8, 12h, seedling (113) | ibup, 3h, seedling (113) | B9, 3h, seedling (113) | AgNO3, 3h, seedling (113) | AVG, 3h, seedling (113) | Sal, 3h, seedling (113) | MG132, 3h, seedling (113) | 246T, 3h, seedling (113) | PCIB, 3h, seedling (113) | TIBA, 3h, seedling (113) | NPA, 3h, seedling (113) | CHX, 3h, seedling (113) | Colm, 3h, seedling (113) | ColPNO8, 3h, seedling (113) | ColBrz, 3h, seedling (113) | glucose, 8h, seedling (14) | sucrose, 8h, seedling (15) | deoxyglucose, 8h_seedling (14) | methylglucose, 8h, seedling (14) | K depleted, whole rosette (97) | K depleted, root (97) | Sulfate depleted, 2h, root (112) | Sulfate depleted, 4h, root (112) | Sulfate depleted, 8h, root (112) | Sulfate depleted, 12h, root (112) | Sulfate depleted, 24h, root (112) | mannitol, 8h, seedling (14) | CO2, 1000ppm, guard cell enriched (11) | CO2, 1000ppm, mature leaf (11) | CO2, high light, whole rosette (95) | CO2, medium light, whole rosette (95) | CO2, low light, whole rosette (95) | CO2, 2h, juvenile leaf (151) | CO2, 4h, juvenile leaf (151) | CO2, 6h, juvenile leaf (151) | CO2, 12h, juvenile leaf (151) | CO2, 24h, juvenile leaf (151) | CO2, 48h, juvenile leaf (151) | dark, 45min, seedling (109) | dark, 4h, seedling (109) | far red, 45min, seedling (109) | far red, 4h, seedling (109) | red pulse1, seedling (109) | red pulse2, seedling (109) | red, 45min, seedling (109) | red, 4h, seedling (109) | blue, 45min, seedling (109) | blue, 4h, seedling (109) | UV-A pulse1, seedling (109) | UV-A pulse2, seedling (109) | UV-AB pulse1, seedling (109) | UV-AB pulse2, seedling (109) | UV-A, 18h, mature leaf (72) | UV-B, 18h, mature leaf (72) | Locus | Probeset | Name | Description | Annotation score | GO.keywords | FunCat keywords | AraCyc annotations | KEGG annotations | BioPath annotations | AcylLipid category | Literature annotations | Gene family | 90% quantile of DE | max. DE |
| At1g17060 | 1.000 | CYP72C1 | Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes ha | 0.01 | 0.01 | 0.04 | 0.04 | 2.39 | -0.33 | -0.71 | -0.35 | -0.4 | -0.88 | -0.28 | -0.08 | -0.74 | -0.48 | -0.13 | -1.61 | 0.17 | -1.65 | -1.12 | -0.54 | -1.65 | -0.47 | 0.18 | 0.04 | 0.41 | -0.44 | -1.26 | -1.2 | -0.44 | -1.26 | -1.2 | 0.37 | 0.77 | -0.54 | 0.99 | 2.52 | 1.13 | 2.06 | -0.24 | 0.48 | -0.53 | 0.37 | -0.15 | 0.59 | 0.03 | 0.19 | -0.27 | 0.26 | 0.01 | 0.9 | -0.35 | 0.84 | -0.01 | -0.47 | 1.12 | 0.42 | 0.57 | -1.02 | 0.46 | -1.02 | 1.34 | -1.02 | 0.17 | 0.16 | 0.46 | 0.08 | 0.01 | 0.24 | 0.01 | 0.01 | 0.01 | -0.08 | 0.02 | 0.12 | 0.04 | -0.08 | -0.03 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 1.19 | -0.11 | -0.42 | -0.06 | 0.95 | -0.03 | 0.56 | 0.09 | -0.37 | -0.1 | 0.82 | -0.15 | 0.46 | 0.01 | 0.01 | At1g17060 | 262525_at | CYP72C1 | Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes ha | 2.5 | response to light | brassinosteroid metabolism | unidimensional cell growth | triterpene, sterol, and brassinosteroid metabolism | brassinosteroid degradation | cytochrome P450 family, brassinosteroid inactivation | 2.34 | 4.19 | |||||
| At1g59500 | 0.642 | encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. | -0.68 | -0.68 | 4.72 | 5.82 | 6.41 | 0 | 0.09 | -0.68 | -0.68 | -0.68 | -0.68 | 0.3 | -0.68 | 0.6 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | 0.37 | -0.17 | 0.97 | -1.31 | -3.33 | -2.98 | -1.31 | -3.33 | -2.98 | -0.97 | -0.47 | -0.36 | 5.74 | 5.43 | 6.36 | 5.85 | 0.01 | -0.68 | 0.31 | -0.68 | -0.68 | -0.35 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | 2.15 | -0.68 | -0.68 | -0.68 | 1.48 | -0.68 | 3.45 | 0.72 | 4.51 | -0.68 | 2.13 | -0.68 | -0.68 | 0.02 | -0.68 | -0.68 | -0.68 | -0.27 | -0.64 | -1.9 | -1.59 | -1.74 | -1.29 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | 0.06 | 1.86 | -0.2 | -0.59 | -0.32 | 1.59 | -0.48 | 0.38 | -0.99 | -0.73 | -0.74 | 1.39 | 1.39 | 0.46 | -0.68 | -0.68 | At1g59500 | 262099_s_at (m) | encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. | 6 | Acyl activating enzymes , CoA ligases, clade III, IAA adenylase | 7.00 | 9.74 | |||||||||
| At4g37390 | 0.642 | YDK1 | encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. may function as a negative component in auxin signaling by regulating auxin activity | -0.68 | -0.68 | 4.72 | 5.82 | 6.41 | 0 | 0.09 | -0.68 | -0.68 | -0.68 | -0.68 | 0.3 | -0.68 | 0.6 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | 0.37 | -0.17 | 0.97 | -1.31 | -3.33 | -2.98 | -1.31 | -3.33 | -2.98 | -0.97 | -0.47 | -0.36 | 5.74 | 5.43 | 6.36 | 5.85 | 0.01 | -0.68 | 0.31 | -0.68 | -0.68 | -0.35 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | 2.15 | -0.68 | -0.68 | -0.68 | 1.48 | -0.68 | 3.45 | 0.72 | 4.51 | -0.68 | 2.13 | -0.68 | -0.68 | 0.02 | -0.68 | -0.68 | -0.68 | -0.27 | -0.64 | -1.9 | -1.59 | -1.74 | -1.29 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | -0.68 | 0.06 | 1.86 | -0.2 | -0.59 | -0.32 | 1.59 | -0.48 | 0.38 | -0.99 | -0.73 | -0.74 | 1.39 | 1.39 | 0.46 | -0.68 | -0.68 | At4g37390 | 262099_s_at (m) | YDK1 | encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. may function as a negative component in auxin signaling by regulating auxin activity | 7 | response to auxin stimulus | plant / fungal specific systemic sensing and response | plant hormonal regulation | Acyl activating enzymes , CoA ligases, clade III, IAA adenylase | 7.00 | 9.74 | |||||
| At4g27260 | 0.533 | encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. | -0.4 | -0.31 | 1.15 | 2.5 | 3.41 | -0.32 | -0.51 | -0.64 | -0.19 | -0.42 | -0.61 | 0.09 | 0.5 | 1.35 | -0.73 | -1.25 | -0.96 | -0.26 | -0.38 | -0.48 | -0.8 | -0.94 | -0.96 | -0.02 | 0.3 | 0.12 | 0.28 | -0.09 | 0.12 | 0.28 | -0.09 | -0.15 | -0.34 | -0.24 | 2.69 | 2.59 | 3.03 | 2.84 | -0.11 | 0.15 | -0.28 | 0.42 | -0.05 | 0.07 | -0.05 | 0.28 | -0.06 | 0.16 | 0.16 | -0.16 | -0.4 | -0.07 | -0.77 | -0.06 | -0.61 | -1.22 | -0.31 | -0.94 | 0.53 | 0.28 | 0.25 | -0.12 | 2.02 | 0.02 | 0.35 | 0.42 | -0.49 | -0.37 | -0.21 | -0.14 | -0.34 | -0.36 | -0.52 | -0.56 | -0.48 | -0.39 | -0.28 | -0.11 | -1.46 | -1.38 | 0.43 | -0.31 | -0.55 | -0.53 | -0.76 | 0.02 | -0.73 | 0.2 | 0.19 | 0.11 | 0.9 | -0.2 | -0.71 | -0.23 | 0.96 | -0.26 | 0.39 | -0.54 | -0.54 | -0.25 | 0.98 | 0.27 | 0.54 | -0.99 | -1.32 | At4g27260 | 253908_at | encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. | 7 | response to auxin stimulus | Acyl activating enzymes , CoA ligases, clade III, IAA adenylase | 3.40 | 4.87 | ||||||||
| page created by Juergen Ehlting | 06/28/06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||