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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
57 |
10 |
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| response to light |
TAIR-GO |
38 |
5 |
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| brassinosteroid metabolism |
TAIR-GO |
36 |
4 |
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| brassinosteroid degradation |
LitPath |
36 |
4 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points) |
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CYP734A1 (At2g26710) |
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| max. difference between log2-ratios: |
4.6 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.0 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| response to auxin stimulus |
TAIR-GO |
13 |
0.000 |
2 |
0.000 |
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| brassinosteroid metabolism |
TAIR-GO |
9 |
0.000 |
1 |
0.000 |
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| response to light |
TAIR-GO |
9 |
0.000 |
1 |
0.005 |
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| brassinosteroid degradation |
LitPath |
9 |
0.000 |
1 |
0.000 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
9 |
0.000 |
1 |
0.010 |
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| plant / fungal specific systemic sensing and response |
FunCat |
7 |
0.000 |
1 |
0.000 |
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| plant hormonal regulation |
FunCat |
7 |
0.000 |
1 |
0.000 |
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| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) |
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CYP734A1 (At2g26710) |
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| max. difference between log2-ratios: |
8.9 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
2.1 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
95.5 |
0.000 |
31 |
0.000 |
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| C-compound and carbohydrate metabolism |
FunCat |
56 |
0.000 |
12 |
0.132 |
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| pectin metabolism |
BioPath |
54.5 |
0.000 |
24 |
0.000 |
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| Ribosome |
KEGG |
44 |
0.000 |
8 |
0.192 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
30 |
0.000 |
7 |
0.019 |
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| Starch and sucrose metabolism |
KEGG |
25 |
0.000 |
4 |
0.041 |
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| Pyruvate metabolism |
KEGG |
21 |
0.000 |
4 |
0.035 |
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| biogenesis of cell wall |
FunCat |
18 |
0.000 |
7 |
0.002 |
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| Nucleotide Metabolism |
KEGG |
18 |
0.000 |
4 |
0.043 |
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| Pyrimidine metabolism |
KEGG |
18 |
0.000 |
4 |
0.003 |
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| Lipid signaling |
AcylLipid |
18 |
0.000 |
4 |
0.203 |
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| transcription |
FunCat |
17 |
0.000 |
4 |
0.000 |
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| glycolysis IV |
AraCyc |
16 |
0.000 |
5 |
0.011 |
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| nucleotide metabolism |
FunCat |
16 |
0.000 |
4 |
0.000 |
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| RNA synthesis |
FunCat |
15 |
0.000 |
3 |
0.014 |
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| jasmonic acid biosynthesis |
TAIR-GO |
14 |
0.000 |
2 |
0.003 |
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| (deoxy)ribose phosphate degradation |
AraCyc |
14 |
0.000 |
3 |
0.000 |
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| acetate fermentation |
AraCyc |
14 |
0.005 |
4 |
0.049 |
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| fructose degradation (anaerobic) |
AraCyc |
14 |
0.003 |
4 |
0.037 |
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| glycerol degradation II |
AraCyc |
14 |
0.000 |
4 |
0.010 |
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| jasmonic acid biosynthesis |
AraCyc |
14 |
0.000 |
2 |
0.015 |
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| non-phosphorylated glucose degradation |
AraCyc |
14 |
0.000 |
4 |
0.002 |
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| sorbitol fermentation |
AraCyc |
14 |
0.005 |
4 |
0.044 |
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| pyrimidine nucleotide metabolism |
FunCat |
14 |
0.000 |
3 |
0.002 |
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| Flavonoid and anthocyanin metabolism |
BioPath |
13 |
0.000 |
4 |
0.056 |
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| cell growth / morphogenesis |
FunCat |
13 |
0.000 |
2 |
0.000 |
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| abscisic acid biosynthesis |
AraCyc |
12 |
0.000 |
2 |
0.000 |
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| lipases pathway |
AraCyc |
12 |
0.000 |
2 |
0.040 |
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| mixed acid fermentation |
AraCyc |
12 |
0.000 |
3 |
0.019 |
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| sucrose degradation III |
AraCyc |
12 |
0.000 |
2 |
0.011 |
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| Carbon fixation |
KEGG |
12 |
0.019 |
3 |
0.082 |
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| Glycolysis / Gluconeogenesis |
KEGG |
12 |
0.048 |
3 |
0.131 |
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| Ligand-Receptor Interaction |
KEGG |
12 |
0.000 |
6 |
0.000 |
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| Purine metabolism |
KEGG |
12 |
0.007 |
3 |
0.065 |
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| Transcription |
KEGG |
12 |
0.006 |
4 |
0.045 |
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| abscisic acid biosynthesis |
LitPath |
12 |
0.000 |
2 |
0.006 |
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| Carotenoid and abscisic acid metabolism |
LitPath |
12 |
0.002 |
2 |
0.094 |
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| response to light |
TAIR-GO |
11 |
0.000 |
2 |
0.018 |
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| response to UV |
TAIR-GO |
11 |
0.000 |
2 |
0.001 |
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| starch biosynthesis |
AraCyc |
11 |
0.000 |
2 |
0.000 |
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| intracellular signalling |
FunCat |
11 |
0.014 |
3 |
0.127 |
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